Wall clock time and date at job start Fri Apr 10 2020 18:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99525 * 2 1 4 4 H 1.48497 * 109.46878 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47288 * 300.00058 * 3 2 1 6 6 H 1.48505 * 109.46898 * 60.00412 * 3 2 1 7 7 C 1.38809 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99924 * 197.37639 * 7 2 1 9 9 N 1.36936 * 119.99752 * 17.37988 * 7 2 1 10 10 C 1.46926 * 120.62960 * 207.67841 * 9 7 2 11 11 C 1.53184 * 108.77920 * 233.58383 * 10 9 7 12 12 C 1.53040 * 109.31449 * 305.36598 * 11 10 9 13 13 H 1.08992 * 109.44741 * 301.35063 * 12 11 10 14 14 N 1.46502 * 109.46105 * 181.37910 * 12 11 10 15 15 C 1.34787 * 119.99655 * 84.93389 * 14 12 11 16 16 O 1.21281 * 119.99715 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99624 * 179.97438 * 15 14 12 18 18 C 1.53004 * 109.46647 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.46892 * 179.97438 * 18 17 15 20 20 N 1.31797 * 119.12690 * 269.73116 * 19 18 17 21 21 C 1.32328 * 120.81685 * 179.76135 * 20 19 18 22 22 C 1.38592 * 119.10803 * 0.50491 * 21 20 19 23 23 C 1.38595 * 118.40038 * 359.75464 * 22 21 20 24 24 N 1.31801 * 119.11802 * 90.00479 * 19 18 17 25 25 C 1.53042 * 109.53738 * 61.36247 * 12 11 10 26 26 H 1.09001 * 109.52260 * 58.60506 * 25 12 11 27 27 O 1.42898 * 109.49860 * 178.68427 * 25 12 11 28 28 C 1.46925 * 120.63224 * 27.65529 * 9 7 2 29 29 H 0.96994 * 119.99972 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.58776 * 353.37860 * 10 9 7 31 31 H 1.09006 * 109.58906 * 113.79746 * 10 9 7 32 32 H 1.09008 * 109.49408 * 65.31861 * 11 10 9 33 33 H 1.09005 * 109.50246 * 185.41051 * 11 10 9 34 34 H 0.96995 * 120.00693 * 264.93275 * 14 12 11 35 35 H 1.08996 * 109.46875 * 299.99698 * 17 15 14 36 36 H 1.08994 * 109.47298 * 60.00246 * 17 15 14 37 37 H 1.08993 * 109.47248 * 300.00530 * 18 17 15 38 38 H 1.09004 * 109.47000 * 60.00255 * 18 17 15 39 39 H 1.08008 * 120.44715 * 180.27462 * 21 20 19 40 40 H 1.08005 * 120.80083 * 179.76845 * 22 21 20 41 41 H 1.07999 * 120.44999 * 180.02562 * 23 22 21 42 42 H 0.96701 * 114.00071 * 179.84361 * 27 25 12 43 43 H 1.08997 * 109.58952 * 246.19978 * 28 9 7 44 44 H 1.08997 * 109.58951 * 6.62785 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2788 9 7 1.3726 -2.3608 -0.3553 10 6 1.8195 -3.6548 0.1781 11 6 2.0746 -4.6092 -0.9926 12 6 0.8190 -4.6884 -1.8639 13 1 -0.0200 -5.0353 -1.2607 14 7 1.0481 -5.6258 -2.9662 15 6 0.8478 -6.9458 -2.7810 16 8 0.4782 -7.3574 -1.7017 17 6 1.0830 -7.9099 -3.9151 18 6 0.7856 -9.3346 -3.4431 19 6 1.0202 -10.2987 -4.5773 20 7 0.0218 -10.5932 -5.3858 21 6 0.1917 -11.4319 -6.3952 22 6 1.4362 -12.0101 -6.5892 23 6 2.4600 -11.6799 -5.7153 24 7 2.2169 -10.8291 -4.7311 25 6 0.5010 -3.3029 -2.4307 26 1 1.3493 -2.9444 -3.0138 27 8 -0.6537 -3.3838 -3.2686 28 6 0.2281 -2.3336 -1.2762 29 1 -0.4850 0.8400 0.0004 30 1 2.7402 -3.5179 0.7453 31 1 1.0472 -4.0694 0.8260 32 1 2.9085 -4.2387 -1.5889 33 1 2.3139 -5.6008 -0.6082 34 1 1.3440 -5.2966 -3.8293 35 1 0.4265 -7.6582 -4.7480 36 1 2.1218 -7.8441 -4.2385 37 1 1.4423 -9.5860 -2.6103 38 1 -0.2532 -9.4007 -3.1195 39 1 -0.6295 -11.6657 -7.0567 40 1 1.6043 -12.7011 -7.4020 41 1 3.4429 -12.1106 -5.8360 42 1 -0.9148 -2.5394 -3.6610 43 1 -0.6741 -2.6405 -0.7471 44 1 0.0987 -1.3250 -1.6687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100042199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:36 Heat of formation + Delta-G solvation = -20.732937 kcal Electronic energy + Delta-G solvation = -26424.642706 eV Core-core repulsion = 22570.546205 eV Total energy + Delta-G solvation = -3854.096501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36873 -39.74408 -37.91858 -35.25889 -34.57789 -34.18297 -34.04453 -32.20551 -31.13759 -29.43039 -28.83466 -26.20916 -24.89540 -24.79567 -22.75445 -22.22275 -21.57818 -20.09740 -19.37088 -17.88883 -17.57171 -17.10674 -16.59936 -16.48590 -15.93644 -15.53368 -15.41861 -15.16002 -14.77879 -14.08026 -13.96412 -13.79121 -13.57306 -13.48795 -13.26062 -12.97464 -12.55617 -12.26397 -12.16857 -11.93175 -11.65978 -11.29538 -11.23229 -11.16872 -11.14468 -10.84955 -10.76346 -10.39006 -10.18724 -10.01347 -9.96387 -9.77787 -9.57055 -9.49003 -9.30309 -8.71425 -8.52399 -6.77935 -5.86965 -3.30241 0.50899 0.73021 2.86488 3.22621 3.32150 3.40713 3.42835 3.45577 3.73251 3.82202 4.21725 4.41280 4.57801 4.61919 4.70887 4.75928 4.94925 4.97486 5.20967 5.30484 5.34410 5.41224 5.43479 5.50850 5.62513 5.81269 5.85640 5.93099 6.02654 6.09369 6.11002 6.26100 6.46869 6.50204 6.64761 6.72084 6.88361 6.92574 7.12987 7.46245 7.72267 7.76852 7.78062 8.10698 8.36171 8.47252 9.11468 9.74414 10.30639 11.21465 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033946 B = 0.002224 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.641463 B =12587.185858 C =12805.045961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.590 5.590 10 C 0.144 3.856 11 C -0.139 4.139 12 C 0.162 3.838 13 H 0.088 0.912 14 N -0.715 5.715 15 C 0.515 3.485 16 O -0.543 6.543 17 C -0.130 4.130 18 C -0.037 4.037 19 C 0.325 3.675 20 N -0.515 5.515 21 C 0.149 3.851 22 C -0.238 4.238 23 C 0.149 3.851 24 N -0.515 5.515 25 C 0.072 3.928 26 H 0.051 0.949 27 O -0.573 6.573 28 C 0.148 3.852 29 H 0.255 0.745 30 H 0.060 0.940 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.168 0.832 40 H 0.147 0.853 41 H 0.168 0.832 42 H 0.375 0.625 43 H 0.030 0.970 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -20.102 -15.502 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.087 0.913 9 N -0.314 5.314 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.058 3.942 13 H 0.106 0.894 14 N -0.365 5.365 15 C 0.301 3.699 16 O -0.421 6.421 17 C -0.172 4.172 18 C -0.076 4.076 19 C 0.058 3.942 20 N -0.229 5.229 21 C -0.017 4.017 22 C -0.260 4.260 23 C -0.017 4.017 24 N -0.229 5.229 25 C 0.011 3.989 26 H 0.069 0.931 27 O -0.377 6.377 28 C 0.021 3.979 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.185 0.815 40 H 0.165 0.835 41 H 0.185 0.815 42 H 0.222 0.778 43 H 0.048 0.952 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.626 -20.249 -13.773 24.629 hybrid contribution 0.691 0.955 -1.520 1.924 sum 3.317 -19.293 -15.293 24.841 Atomic orbital electron populations 1.70042 1.05259 1.25571 1.53741 1.25084 0.95325 0.98566 1.00770 0.86209 0.79392 0.83775 0.77327 1.20189 1.21537 1.21642 1.19249 0.92871 0.84644 1.41567 0.91306 1.44026 1.35655 1.01799 1.49873 1.20946 0.98227 0.86305 0.92753 1.22411 0.96671 1.00235 0.98608 1.20984 0.98628 0.87073 0.87519 0.89415 1.46096 1.68502 1.06357 1.15519 1.20364 0.77192 0.83056 0.89300 1.90705 1.46497 1.77912 1.26987 1.21531 1.04075 0.93289 0.98271 1.20148 1.05127 0.89556 0.92816 1.23321 0.84108 0.92966 0.93831 1.68332 1.34613 1.15017 1.04895 1.23294 0.96491 0.89231 0.92684 1.22922 0.95933 1.04057 1.03068 1.23292 0.99559 0.90614 0.88264 1.68336 1.23328 1.10003 1.21227 1.22977 0.87019 0.95537 0.93363 0.93099 1.86416 1.48326 1.36505 1.66493 1.21420 0.89813 0.98251 0.88430 0.93540 0.92116 0.95811 0.92068 0.91752 0.76999 0.88714 0.88803 0.88192 0.88185 0.81457 0.83522 0.81465 0.77782 0.95235 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.19 55.49 0.62 -24.92 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.25 -6.78 9.59 -15.06 -0.14 -6.92 16 8 H 0.07 1.81 7.89 -52.49 -0.41 1.39 16 9 N -0.59 -14.45 2.99 -172.33 -0.52 -14.96 16 10 C 0.14 3.06 6.51 -3.71 -0.02 3.04 16 11 C -0.14 -2.52 5.65 -26.62 -0.15 -2.67 16 12 C 0.16 2.93 2.12 -67.89 -0.14 2.79 16 13 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 14 N -0.72 -10.63 4.92 -53.76 -0.26 -10.90 16 15 C 0.52 7.71 7.79 -10.98 -0.09 7.62 16 16 O -0.54 -10.14 15.65 5.56 0.09 -10.05 16 17 C -0.13 -1.45 5.68 -27.88 -0.16 -1.61 16 18 C -0.04 -0.43 4.94 -27.88 -0.14 -0.57 16 19 C 0.32 3.64 6.90 -157.19 -1.08 2.55 16 20 N -0.51 -5.50 10.33 -10.72 -0.11 -5.61 16 21 C 0.15 1.10 11.30 -17.21 -0.19 0.90 16 22 C -0.24 -1.37 10.17 -39.32 -0.40 -1.77 16 23 C 0.15 1.08 11.30 -17.20 -0.19 0.89 16 24 N -0.52 -5.44 10.34 -10.72 -0.11 -5.55 16 25 C 0.07 1.34 3.14 -26.61 -0.08 1.26 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 O -0.57 -9.78 13.16 -35.23 -0.46 -10.24 16 28 C 0.15 3.42 4.93 -3.71 -0.02 3.40 16 29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.40 4.93 8.60 -40.82 -0.35 4.58 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 40 H 0.15 0.36 8.06 -52.48 -0.42 -0.07 16 41 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.38 5.14 9.08 45.56 0.41 5.56 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -33.82 367.23 -8.83 -42.65 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.67 Total: 9.13 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -2.90 Total: 8.85 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.38 Total: -61.95 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.38 Total: -20.30 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.82 -8.83 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100042199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.916 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds