Wall clock time and date at job start Fri Apr 10 2020 18:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99525 * 2 1 4 4 H 1.48497 * 109.46878 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47288 * 300.00058 * 3 2 1 6 6 H 1.48505 * 109.46898 * 60.00412 * 3 2 1 7 7 C 1.38809 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99924 * 197.37639 * 7 2 1 9 9 N 1.36936 * 119.99752 * 17.37988 * 7 2 1 10 10 C 1.46926 * 120.62960 * 207.67841 * 9 7 2 11 11 C 1.53184 * 108.77920 * 233.58383 * 10 9 7 12 12 C 1.53040 * 109.31449 * 305.36598 * 11 10 9 13 13 H 1.08992 * 109.44741 * 301.35063 * 12 11 10 14 14 N 1.46502 * 109.46105 * 181.37910 * 12 11 10 15 15 C 1.34787 * 119.99655 * 84.93389 * 14 12 11 16 16 O 1.21281 * 119.99715 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99624 * 179.97438 * 15 14 12 18 18 C 1.53004 * 109.46647 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.46892 * 179.97438 * 18 17 15 20 20 N 1.31797 * 119.12690 * 269.73116 * 19 18 17 21 21 C 1.32328 * 120.81685 * 179.76135 * 20 19 18 22 22 C 1.38592 * 119.10803 * 0.50491 * 21 20 19 23 23 C 1.38595 * 118.40038 * 359.75464 * 22 21 20 24 24 N 1.31801 * 119.11802 * 90.00479 * 19 18 17 25 25 C 1.53042 * 109.53738 * 61.36247 * 12 11 10 26 26 H 1.09001 * 109.52260 * 58.60506 * 25 12 11 27 27 O 1.42898 * 109.49860 * 178.68427 * 25 12 11 28 28 C 1.46925 * 120.63224 * 27.65529 * 9 7 2 29 29 H 0.96994 * 119.99972 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.58776 * 353.37860 * 10 9 7 31 31 H 1.09006 * 109.58906 * 113.79746 * 10 9 7 32 32 H 1.09008 * 109.49408 * 65.31861 * 11 10 9 33 33 H 1.09005 * 109.50246 * 185.41051 * 11 10 9 34 34 H 0.96995 * 120.00693 * 264.93275 * 14 12 11 35 35 H 1.08996 * 109.46875 * 299.99698 * 17 15 14 36 36 H 1.08994 * 109.47298 * 60.00246 * 17 15 14 37 37 H 1.08993 * 109.47248 * 300.00530 * 18 17 15 38 38 H 1.09004 * 109.47000 * 60.00255 * 18 17 15 39 39 H 1.08008 * 120.44715 * 180.27462 * 21 20 19 40 40 H 1.08005 * 120.80083 * 179.76845 * 22 21 20 41 41 H 1.07999 * 120.44999 * 180.02562 * 23 22 21 42 42 H 0.96701 * 114.00071 * 179.84361 * 27 25 12 43 43 H 1.08997 * 109.58952 * 246.19978 * 28 9 7 44 44 H 1.08997 * 109.58951 * 6.62785 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2788 9 7 1.3726 -2.3608 -0.3553 10 6 1.8195 -3.6548 0.1781 11 6 2.0746 -4.6092 -0.9926 12 6 0.8190 -4.6884 -1.8639 13 1 -0.0200 -5.0353 -1.2607 14 7 1.0481 -5.6258 -2.9662 15 6 0.8478 -6.9458 -2.7810 16 8 0.4782 -7.3574 -1.7017 17 6 1.0830 -7.9099 -3.9151 18 6 0.7856 -9.3346 -3.4431 19 6 1.0202 -10.2987 -4.5773 20 7 0.0218 -10.5932 -5.3858 21 6 0.1917 -11.4319 -6.3952 22 6 1.4362 -12.0101 -6.5892 23 6 2.4600 -11.6799 -5.7153 24 7 2.2169 -10.8291 -4.7311 25 6 0.5010 -3.3029 -2.4307 26 1 1.3493 -2.9444 -3.0138 27 8 -0.6537 -3.3838 -3.2686 28 6 0.2281 -2.3336 -1.2762 29 1 -0.4850 0.8400 0.0004 30 1 2.7402 -3.5179 0.7453 31 1 1.0472 -4.0694 0.8260 32 1 2.9085 -4.2387 -1.5889 33 1 2.3139 -5.6008 -0.6082 34 1 1.3440 -5.2966 -3.8293 35 1 0.4265 -7.6582 -4.7480 36 1 2.1218 -7.8441 -4.2385 37 1 1.4423 -9.5860 -2.6103 38 1 -0.2532 -9.4007 -3.1195 39 1 -0.6295 -11.6657 -7.0567 40 1 1.6043 -12.7011 -7.4020 41 1 3.4429 -12.1106 -5.8360 42 1 -0.9148 -2.5394 -3.6610 43 1 -0.6741 -2.6405 -0.7471 44 1 0.0987 -1.3250 -1.6687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100042199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:36 Heat of formation + Delta-G solvation = -46.912508 kcal Electronic energy + Delta-G solvation = -26425.777937 eV Core-core repulsion = 22570.546205 eV Total energy + Delta-G solvation = -3855.231732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.99495 -41.06952 -39.44571 -36.89119 -35.86620 -35.21390 -34.66478 -33.95173 -32.06246 -31.04009 -30.47910 -27.50897 -26.26774 -25.44975 -24.18024 -23.58021 -22.90688 -21.41622 -20.94904 -18.98196 -18.52837 -18.31408 -18.09979 -17.53882 -17.31108 -16.68914 -16.49146 -16.12167 -15.88585 -15.60333 -15.44692 -15.14231 -14.83019 -14.65815 -14.43452 -14.13818 -13.89066 -13.80665 -13.45894 -13.34968 -13.14721 -13.04070 -12.68742 -12.51860 -12.18704 -12.07868 -11.98962 -11.87839 -11.83436 -11.77722 -11.39475 -11.02333 -10.83848 -10.61397 -10.41288 -10.19556 -10.02196 -8.77150 -7.91129 -5.38258 -0.07550 0.18528 1.47291 1.49909 1.60525 1.66497 2.13189 2.49387 2.79959 2.95219 3.12028 3.26968 3.26990 3.63417 3.72976 3.79699 3.92231 4.04584 4.08918 4.13872 4.24040 4.25304 4.31384 4.42495 4.45956 4.50242 4.61718 4.72857 4.76942 4.90784 4.95792 5.02209 5.03358 5.05066 5.15895 5.33291 5.48015 5.51662 5.56236 5.63786 6.09354 6.32896 6.59348 6.82394 7.09558 7.14270 7.28936 7.77042 8.30171 9.15778 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033946 B = 0.002224 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.641463 B =12587.185858 C =12805.045961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.296 1.296 7 C -0.263 4.263 8 H 0.073 0.927 9 N -0.605 5.605 10 C 0.141 3.859 11 C -0.122 4.122 12 C 0.169 3.831 13 H 0.054 0.946 14 N -0.705 5.705 15 C 0.514 3.486 16 O -0.584 6.584 17 C -0.113 4.113 18 C -0.032 4.032 19 C 0.306 3.694 20 N -0.543 5.543 21 C 0.135 3.865 22 C -0.218 4.218 23 C 0.136 3.864 24 N -0.540 5.540 25 C 0.092 3.908 26 H 0.067 0.933 27 O -0.573 6.573 28 C 0.156 3.844 29 H 0.252 0.748 30 H 0.067 0.933 31 H 0.008 0.992 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.413 0.587 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.197 0.803 40 H 0.187 0.813 41 H 0.199 0.801 42 H 0.392 0.608 43 H -0.006 1.006 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.900 -21.432 -18.370 28.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.223 1.223 7 C -0.393 4.393 8 H 0.091 0.909 9 N -0.330 5.330 10 C 0.015 3.985 11 C -0.162 4.162 12 C 0.064 3.936 13 H 0.072 0.928 14 N -0.356 5.356 15 C 0.302 3.698 16 O -0.464 6.464 17 C -0.154 4.154 18 C -0.072 4.072 19 C 0.038 3.962 20 N -0.257 5.257 21 C -0.030 4.030 22 C -0.239 4.239 23 C -0.029 4.029 24 N -0.255 5.255 25 C 0.031 3.969 26 H 0.085 0.915 27 O -0.380 6.380 28 C 0.029 3.971 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.026 0.974 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.249 0.751 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.214 0.786 40 H 0.204 0.796 41 H 0.215 0.785 42 H 0.241 0.759 43 H 0.012 0.988 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.420 -21.599 -16.694 27.654 hybrid contribution 0.096 1.247 -0.648 1.409 sum 4.516 -20.352 -17.343 27.118 Atomic orbital electron populations 1.70200 1.06743 1.26031 1.55181 1.25856 0.96050 1.01679 1.00976 0.85164 0.78681 0.79540 0.76770 1.18903 1.21310 1.22293 1.19586 0.93209 0.85569 1.40960 0.90917 1.44277 1.35680 1.02403 1.50597 1.21049 0.97827 0.85676 0.93969 1.22200 0.96994 0.99606 0.97447 1.20640 0.97468 0.87354 0.88170 0.92752 1.45887 1.68357 1.05973 1.15338 1.21030 0.75906 0.83218 0.89681 1.90694 1.48219 1.78524 1.28988 1.21435 1.05547 0.91757 0.96648 1.19975 1.03739 0.90314 0.93166 1.23007 0.84875 0.93981 0.94296 1.68283 1.34850 1.16523 1.06067 1.23909 0.98308 0.88568 0.92172 1.23333 0.94544 1.03040 1.02975 1.23924 1.01422 0.89917 0.87635 1.68290 1.23135 1.11247 1.22797 1.22553 0.87932 0.94553 0.91824 0.91525 1.86396 1.47812 1.37864 1.65937 1.21230 0.88307 0.98151 0.89389 0.93920 0.91447 0.97414 0.90632 0.91031 0.75107 0.87282 0.86761 0.89462 0.89867 0.78578 0.79570 0.78456 0.75904 0.98820 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.34 11.19 21.65 0.24 -54.09 16 2 C -0.05 -2.73 4.91 84.86 0.42 -2.32 16 3 Si 0.97 43.56 29.59 68.60 2.03 45.59 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 7 C -0.26 -14.12 9.59 84.03 0.81 -13.32 16 8 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 9 N -0.60 -30.12 2.99 -699.12 -2.09 -32.21 16 10 C 0.14 6.04 6.51 86.36 0.56 6.60 16 11 C -0.12 -4.35 5.65 30.67 0.17 -4.18 16 12 C 0.17 6.08 2.12 45.02 0.10 6.18 16 13 H 0.05 2.35 7.58 -2.39 -0.02 2.33 16 14 N -0.71 -20.04 4.92 -442.40 -2.18 -22.21 16 15 C 0.51 15.09 7.79 87.66 0.68 15.78 16 16 O -0.58 -22.24 15.65 -3.03 -0.05 -22.29 16 17 C -0.11 -2.39 5.68 29.85 0.17 -2.22 16 18 C -0.03 -0.76 4.94 29.85 0.15 -0.61 16 19 C 0.31 6.66 6.90 138.75 0.96 7.61 16 20 N -0.54 -11.01 10.33 -187.84 -1.94 -12.95 16 21 C 0.14 1.65 11.30 84.70 0.96 2.60 16 22 C -0.22 -1.74 10.17 22.44 0.23 -1.51 16 23 C 0.14 1.61 11.30 84.70 0.96 2.57 16 24 N -0.54 -10.69 10.34 -187.84 -1.94 -12.63 16 25 C 0.09 3.40 3.14 30.67 0.10 3.50 16 26 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 27 O -0.57 -19.08 13.16 -148.98 -1.96 -21.04 16 28 C 0.16 7.43 4.93 86.36 0.43 7.85 16 29 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 30 H 0.07 2.75 7.93 -2.39 -0.02 2.73 16 31 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.41 9.22 8.60 -92.71 -0.80 8.42 16 35 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 2.20 8.10 -2.39 -0.02 2.18 16 38 H 0.08 2.17 8.10 -2.38 -0.02 2.15 16 39 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.19 -0.05 8.06 -2.91 -0.02 -0.08 16 41 H 0.20 0.90 8.06 -2.91 -0.02 0.88 16 42 H 0.39 10.31 9.08 -74.06 -0.67 9.63 16 43 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 44 H 0.07 3.70 6.04 -2.39 -0.01 3.68 16 Total: -1.00 -75.77 367.23 -1.65 -77.42 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.44 Total: 25.89 kcal Atomic # 6 Polarization: 21.85 SS G_CDS: 6.68 Total: 28.53 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -7.91 Total: -134.10 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -2.01 Total: -43.32 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -75.77 -1.65 -77.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100042199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.507 kcal (2) G-P(sol) polarization free energy of solvation -75.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds