Wall clock time and date at job start Fri Apr 10 2020 18:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99752 * 2 1 4 4 H 1.48505 * 109.47021 * 239.99840 * 3 2 1 5 5 H 1.48494 * 109.47344 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46898 * 120.00006 * 3 2 1 7 7 C 1.38811 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99981 * 197.35756 * 7 2 1 9 9 N 1.36935 * 120.00355 * 17.35426 * 7 2 1 10 10 C 1.46932 * 120.62822 * 27.67751 * 9 7 2 11 11 C 1.53185 * 108.77625 * 126.41113 * 10 9 7 12 12 C 1.53046 * 109.31429 * 54.63535 * 11 10 9 13 13 H 1.08999 * 109.45939 * 58.63713 * 12 11 10 14 14 N 1.46496 * 109.46171 * 178.61631 * 12 11 10 15 15 C 1.34775 * 119.99802 * 275.02583 * 14 12 11 16 16 O 1.21294 * 120.00090 * 359.97438 * 15 14 12 17 17 C 1.50699 * 120.00137 * 180.02562 * 15 14 12 18 18 C 1.53004 * 109.47303 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47303 * 179.97438 * 18 17 15 20 20 C 1.38387 * 120.00449 * 125.00171 * 19 18 17 21 21 N 1.32123 * 120.00115 * 179.97438 * 20 19 18 22 22 C 1.32152 * 119.99777 * 359.97438 * 21 20 19 23 23 C 1.38342 * 120.00214 * 359.97438 * 22 21 20 24 24 N 1.32126 * 119.99677 * 304.72530 * 19 18 17 25 25 C 1.53045 * 109.52358 * 298.63108 * 12 11 10 26 26 H 1.08997 * 109.49310 * 301.41369 * 25 12 11 27 27 O 1.42899 * 109.49318 * 181.32248 * 25 12 11 28 28 C 1.46921 * 120.63178 * 207.69528 * 9 7 2 29 29 H 0.97006 * 120.00771 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.58342 * 6.62452 * 10 9 7 31 31 H 1.08996 * 109.58475 * 246.20392 * 10 9 7 32 32 H 1.09002 * 109.50287 * 294.68596 * 11 10 9 33 33 H 1.09001 * 109.50192 * 174.58262 * 11 10 9 34 34 H 0.97002 * 120.00154 * 95.02673 * 14 12 11 35 35 H 1.08999 * 109.46852 * 299.99912 * 17 15 14 36 36 H 1.08999 * 109.47220 * 60.00201 * 17 15 14 37 37 H 1.09000 * 109.47499 * 300.00377 * 18 17 15 38 38 H 1.09008 * 109.46711 * 59.99833 * 18 17 15 39 39 H 1.08003 * 119.99503 * 359.97438 * 20 19 18 40 40 H 1.07996 * 119.99769 * 180.02562 * 22 21 20 41 41 H 1.08003 * 119.99982 * 179.97438 * 23 22 21 42 42 H 0.96704 * 113.99680 * 179.97438 * 27 25 12 43 43 H 1.08997 * 109.58862 * 353.38026 * 28 9 7 44 44 H 1.09010 * 109.58226 * 113.65697 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2796 9 7 1.3723 -2.3612 -0.3527 10 6 0.2277 -2.3351 -1.2736 11 6 0.5005 -3.3057 -2.4269 12 6 0.8183 -4.6907 -1.8584 13 1 -0.0207 -5.0367 -1.2547 14 7 1.0473 -5.6294 -2.9595 15 6 0.0035 -6.2503 -3.5438 16 8 -1.1254 -6.0322 -3.1577 17 6 0.2391 -7.2164 -4.6762 18 6 -1.1014 -7.7773 -5.1553 19 6 -0.8659 -8.7429 -6.2880 20 6 -1.3566 -10.0345 -6.2096 21 7 -1.1505 -10.8809 -7.2030 22 6 -0.4763 -10.4939 -8.2717 23 6 0.0133 -9.2024 -8.3505 24 7 -0.1957 -8.3547 -7.3584 25 6 2.0742 -4.6102 -0.9874 26 1 2.9078 -4.2405 -1.5845 27 8 2.3880 -5.9094 -0.4820 28 6 1.8192 -3.6546 0.1823 29 1 -0.4851 0.8400 0.0004 30 1 0.0985 -1.3269 -1.6673 31 1 -0.6744 -2.6411 -0.7439 32 1 1.3491 -2.9484 -3.0102 33 1 -0.3803 -3.3682 -3.0659 34 1 1.9502 -5.8041 -3.2681 35 1 0.7316 -6.6985 -5.4991 36 1 0.8718 -8.0339 -4.3306 37 1 -1.5937 -8.2953 -4.3322 38 1 -1.7346 -6.9599 -5.5007 39 1 -1.9079 -10.3506 -5.3364 40 1 -0.3082 -11.1856 -9.0839 41 1 0.5647 -8.8863 -9.2237 42 1 3.1749 -5.9335 0.0796 43 1 2.7399 -3.5170 0.7493 44 1 1.0478 -4.0671 0.8328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100067464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:41 Heat of formation + Delta-G solvation = -22.671210 kcal Electronic energy + Delta-G solvation = -26413.927334 eV Core-core repulsion = 22559.746784 eV Total energy + Delta-G solvation = -3854.180550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.42889 -39.76863 -38.00817 -35.42559 -35.21010 -34.29452 -33.75097 -31.99838 -30.84308 -29.82972 -28.54632 -26.24499 -25.03894 -24.66112 -22.72312 -22.26875 -21.58567 -20.10958 -19.40831 -17.93805 -17.41757 -17.24156 -16.88266 -16.58100 -15.94345 -15.76920 -15.58846 -15.00093 -14.83003 -14.19863 -13.96197 -13.76218 -13.56164 -13.39601 -13.16593 -12.86279 -12.55871 -12.27898 -12.25511 -12.04608 -11.91394 -11.57774 -11.56558 -11.25688 -11.11542 -10.86821 -10.68063 -10.34943 -10.27825 -9.95546 -9.83005 -9.73387 -9.58982 -9.42270 -9.33162 -8.73629 -8.45211 -6.78462 -5.85713 -3.29827 0.41175 0.78320 2.86106 3.26399 3.34358 3.40791 3.41196 3.42561 3.71565 3.92691 4.13162 4.35649 4.43459 4.52041 4.69643 4.80011 4.92452 5.05017 5.14017 5.19484 5.29643 5.32359 5.44365 5.48571 5.55350 5.75345 5.77272 5.83825 5.96982 6.04230 6.11833 6.32912 6.47433 6.53337 6.66417 6.76356 6.88226 6.91977 7.28561 7.43136 7.59774 7.71652 7.75895 7.90239 8.36713 8.46535 9.12159 9.74671 10.30522 11.22824 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026437 B = 0.002292 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.858553 B =12211.546273 C =12591.766356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.162 3.838 13 H 0.087 0.913 14 N -0.716 5.716 15 C 0.512 3.488 16 O -0.544 6.544 17 C -0.131 4.131 18 C -0.051 4.051 19 C 0.088 3.912 20 C 0.053 3.947 21 N -0.437 5.437 22 C 0.037 3.963 23 C 0.055 3.945 24 N -0.436 5.436 25 C 0.080 3.920 26 H 0.056 0.944 27 O -0.571 6.571 28 C 0.121 3.879 29 H 0.256 0.744 30 H 0.093 0.907 31 H 0.024 0.976 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.396 0.604 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.170 0.830 42 H 0.373 0.627 43 H 0.059 0.941 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.730 -18.675 -13.849 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.058 3.942 13 H 0.105 0.895 14 N -0.366 5.366 15 C 0.298 3.702 16 O -0.422 6.422 17 C -0.172 4.172 18 C -0.090 4.090 19 C -0.053 4.053 20 C -0.107 4.107 21 N -0.152 5.152 22 C -0.122 4.122 23 C -0.105 4.105 24 N -0.151 5.151 25 C 0.019 3.981 26 H 0.074 0.926 27 O -0.376 6.376 28 C -0.007 4.007 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.229 0.771 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.188 0.812 40 H 0.185 0.815 41 H 0.187 0.813 42 H 0.220 0.780 43 H 0.078 0.922 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.252 -18.529 -13.889 23.190 hybrid contribution 1.471 0.919 0.059 1.735 sum 2.723 -17.610 -13.830 22.557 Atomic orbital electron populations 1.70023 1.05292 1.25889 1.53032 1.25070 0.95304 0.98541 1.00505 0.86342 0.78913 0.83184 0.78139 1.20957 1.21547 1.20821 1.19110 0.92675 0.84666 1.42518 0.91594 1.44039 1.35888 1.01024 1.50262 1.20836 0.88672 0.98418 0.87607 1.22598 1.00991 0.94325 1.00738 1.20995 0.97431 0.89358 0.86369 0.89467 1.46095 1.09265 1.44907 1.36296 1.20491 0.85136 0.81109 0.83504 1.90715 1.22619 1.64518 1.64319 1.21548 0.98743 0.99066 0.97814 1.20276 0.97582 0.97552 0.93616 1.22399 0.93618 0.94636 0.94599 1.23702 0.98198 0.90609 0.98192 1.68459 1.10637 1.35599 1.00458 1.23762 0.95236 0.96360 0.96883 1.23812 0.97610 0.91274 0.97852 1.68298 1.11062 1.35675 1.00098 1.22777 0.96039 0.83063 0.96226 0.92632 1.86477 1.50567 1.30338 1.70193 1.21522 0.98771 0.87450 0.92948 0.93357 0.88868 0.95812 0.92394 0.91918 0.77077 0.88084 0.89265 0.88825 0.88503 0.81211 0.81452 0.81313 0.78026 0.92220 0.95329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.19 55.49 0.62 -25.15 16 2 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 3 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.93 9.58 -15.06 -0.14 -7.07 16 8 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -14.33 2.99 -172.32 -0.52 -14.85 16 10 C 0.17 4.07 5.31 -3.71 -0.02 4.05 16 11 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16 12 C 0.16 2.89 2.12 -67.89 -0.14 2.74 16 13 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 14 N -0.72 -10.34 4.92 -53.76 -0.26 -10.60 16 15 C 0.51 7.42 7.79 -10.99 -0.09 7.34 16 16 O -0.54 -10.00 15.65 5.55 0.09 -9.92 16 17 C -0.13 -1.35 5.57 -27.88 -0.16 -1.51 16 18 C -0.05 -0.51 4.92 -27.88 -0.14 -0.65 16 19 C 0.09 0.83 6.17 -82.41 -0.51 0.32 16 20 C 0.05 0.47 10.85 -17.37 -0.19 0.28 16 21 N -0.44 -4.10 10.50 -13.06 -0.14 -4.24 16 22 C 0.04 0.26 11.22 -17.38 -0.20 0.07 16 23 C 0.05 0.40 11.22 -17.37 -0.20 0.20 16 24 N -0.44 -4.27 10.06 -9.29 -0.09 -4.36 16 25 C 0.08 1.34 3.14 -26.61 -0.08 1.26 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 O -0.57 -8.37 13.16 -35.23 -0.46 -8.83 16 28 C 0.12 2.44 6.14 -3.72 -0.02 2.41 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.40 4.70 8.60 -40.82 -0.35 4.35 16 35 H 0.10 0.99 7.97 -51.93 -0.41 0.57 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.87 7.85 -51.93 -0.41 0.46 16 38 H 0.10 1.07 8.10 -51.92 -0.42 0.65 16 39 H 0.17 1.11 7.96 -52.48 -0.42 0.69 16 40 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.17 0.68 8.06 -52.48 -0.42 0.26 16 42 H 0.37 3.90 9.08 45.56 0.41 4.32 16 43 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 44 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -33.86 366.25 -8.04 -41.90 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.65 Total: 7.85 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -2.12 Total: 6.50 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.39 Total: -59.20 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.38 Total: -18.75 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.86 -8.04 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100067464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.230 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds