Wall clock time and date at job start Fri Apr 10 2020 18:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99870 * 2 1 4 4 H 1.48498 * 109.47196 * 93.06576 * 3 2 1 5 5 H 1.48501 * 109.47021 * 213.06793 * 3 2 1 6 6 H 1.48503 * 109.46892 * 333.06630 * 3 2 1 7 7 C 1.38812 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00153 * 18.89648 * 7 2 1 9 9 N 1.36933 * 119.99972 * 198.89571 * 7 2 1 10 10 C 1.46920 * 120.63252 * 209.28349 * 9 7 2 11 11 C 1.52764 * 109.01317 * 233.58698 * 10 9 7 12 12 C 1.53037 * 109.38332 * 305.58780 * 11 10 9 13 13 H 1.08998 * 109.46585 * 181.25793 * 12 11 10 14 14 N 1.46502 * 109.46081 * 301.22247 * 12 11 10 15 15 C 1.34775 * 119.99593 * 275.06406 * 14 12 11 16 16 O 1.21277 * 120.00192 * 0.02562 * 15 14 12 17 17 C 1.50706 * 119.99938 * 179.97438 * 15 14 12 18 18 C 1.53002 * 109.47113 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.47228 * 180.02562 * 18 17 15 20 20 C 1.38390 * 119.99918 * 125.00196 * 19 18 17 21 21 N 1.32123 * 119.99670 * 179.97438 * 20 19 18 22 22 C 1.32148 * 120.00414 * 0.02562 * 21 20 19 23 23 C 1.38347 * 120.00114 * 359.97438 * 22 21 20 24 24 N 1.32121 * 120.00216 * 304.72947 * 19 18 17 25 25 C 1.53042 * 109.53718 * 61.23470 * 12 11 10 26 26 H 1.09007 * 109.52074 * 58.60544 * 25 12 11 27 27 O 1.42903 * 109.49916 * 178.68402 * 25 12 11 28 28 C 1.46931 * 120.63088 * 29.56725 * 9 7 2 29 29 H 0.96996 * 120.00345 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58834 * 353.42213 * 10 9 7 31 31 H 1.09004 * 109.58533 * 113.84386 * 10 9 7 32 32 H 1.09005 * 109.56242 * 185.55271 * 11 10 9 33 33 H 1.09000 * 109.38341 * 65.51317 * 11 10 9 34 34 H 0.96999 * 120.00233 * 95.06299 * 14 12 11 35 35 H 1.08994 * 109.47548 * 300.00518 * 17 15 14 36 36 H 1.09006 * 109.46712 * 60.00503 * 17 15 14 37 37 H 1.08994 * 109.47341 * 300.00650 * 18 17 15 38 38 H 1.09006 * 109.46916 * 60.00634 * 18 17 15 39 39 H 1.07996 * 120.00353 * 359.95850 * 20 19 18 40 40 H 1.07999 * 120.00724 * 180.02562 * 22 21 20 41 41 H 1.07997 * 120.00034 * 180.02562 * 23 22 21 42 42 H 0.96697 * 114.00117 * 179.84266 * 27 25 12 43 43 H 1.08996 * 109.58611 * 246.15673 * 28 9 7 44 44 H 1.08998 * 109.58480 * 6.58113 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5625 2.0091 1.3980 5 1 3.5138 1.4598 -0.7639 6 1 1.4166 2.6706 -0.6342 7 6 2.0103 -1.2021 0.0005 8 1 1.5140 -2.1124 -0.3020 9 7 3.3243 -1.2339 0.3846 10 6 4.2418 -2.2392 -0.1686 11 6 4.9206 -2.9801 0.9821 12 6 5.5868 -1.9669 1.9158 13 1 6.0905 -2.4954 2.7251 14 7 6.5665 -1.1800 1.1628 15 6 7.8177 -1.6498 0.9887 16 8 8.1323 -2.7243 1.4550 17 6 8.8255 -0.8406 0.2137 18 6 10.1561 -1.5943 0.1651 19 6 11.1640 -0.7849 -0.6093 20 6 12.3797 -0.4597 -0.0336 21 7 13.2636 0.2496 -0.7129 22 6 12.9866 0.6489 -1.9417 23 6 11.7712 0.3238 -2.5173 24 7 10.8892 -0.3902 -1.8399 25 6 4.5239 -1.0335 2.5001 26 1 3.7808 -1.6205 3.0400 27 8 5.1426 -0.1074 3.3954 28 6 3.8420 -0.2671 1.3624 29 1 -0.4850 0.8400 -0.0004 30 1 3.6822 -2.9485 -0.7783 31 1 4.9985 -1.7466 -0.7793 32 1 5.6749 -3.6591 0.5844 33 1 4.1743 -3.5495 1.5361 34 1 6.3148 -0.3208 0.7895 35 1 8.4605 -0.6811 -0.8009 36 1 8.9716 0.1225 0.7029 37 1 10.5208 -1.7534 1.1799 38 1 10.0103 -2.5576 -0.3238 39 1 12.6059 -0.7854 0.9709 40 1 13.7092 1.2283 -2.4972 41 1 11.5450 0.6498 -3.5218 42 1 4.5271 0.5179 3.8017 43 1 4.5653 0.3896 0.8792 44 1 3.0185 0.3245 1.7625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100067465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:44 Heat of formation + Delta-G solvation = -15.171155 kcal Electronic energy + Delta-G solvation = -27067.011427 eV Core-core repulsion = 23213.156104 eV Total energy + Delta-G solvation = -3853.855324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41537 -40.03523 -38.22069 -35.57301 -35.19918 -34.23638 -33.74585 -32.12971 -30.94416 -30.09628 -29.16575 -26.19589 -25.22543 -24.77003 -23.04811 -22.53863 -21.67623 -20.49306 -18.98815 -17.94758 -17.44698 -17.21996 -17.01804 -16.89546 -15.96481 -15.68781 -15.64708 -15.26941 -14.93647 -14.39498 -14.15158 -13.94380 -13.81013 -13.58477 -13.21214 -12.95845 -12.73562 -12.45457 -12.32603 -12.26373 -11.89614 -11.84907 -11.57362 -11.54318 -11.25289 -11.12303 -11.00884 -10.58322 -10.34879 -9.93389 -9.77643 -9.68981 -9.55854 -9.48371 -9.36357 -8.78783 -8.70401 -7.09118 -6.06598 -3.46412 0.42632 0.80140 2.80547 3.16645 3.25540 3.37257 3.39086 3.41996 3.72662 3.93962 4.14315 4.30065 4.39842 4.45049 4.70352 4.80018 4.86452 4.92371 5.05239 5.12273 5.15598 5.20745 5.27593 5.43743 5.46902 5.54229 5.65721 5.75039 5.77121 5.82769 5.98686 6.05377 6.18963 6.29045 6.32100 6.43647 6.56786 6.67132 6.82163 6.93670 7.44894 7.70973 7.75742 7.91511 8.22281 8.39512 8.80484 9.58221 9.94809 11.09205 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017003 B = 0.003056 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.348683 B = 9160.498066 C = 9826.357255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.025 3.975 3 Si 0.886 3.114 4 H -0.288 1.288 5 H -0.273 1.273 6 H -0.302 1.302 7 C -0.263 4.263 8 H 0.088 0.912 9 N -0.600 5.600 10 C 0.148 3.852 11 C -0.145 4.145 12 C 0.164 3.836 13 H 0.085 0.915 14 N -0.709 5.709 15 C 0.516 3.484 16 O -0.551 6.551 17 C -0.134 4.134 18 C -0.049 4.049 19 C 0.087 3.913 20 C 0.052 3.948 21 N -0.437 5.437 22 C 0.037 3.963 23 C 0.056 3.944 24 N -0.435 5.435 25 C 0.076 3.924 26 H 0.073 0.927 27 O -0.571 6.571 28 C 0.097 3.903 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.401 0.599 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.170 0.830 42 H 0.377 0.623 43 H 0.028 0.972 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.592 1.065 -0.250 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.717 3.283 4 H -0.216 1.216 5 H -0.198 1.198 6 H -0.230 1.230 7 C -0.391 4.391 8 H 0.105 0.895 9 N -0.326 5.326 10 C 0.022 3.978 11 C -0.186 4.186 12 C 0.060 3.940 13 H 0.103 0.897 14 N -0.360 5.360 15 C 0.302 3.698 16 O -0.429 6.429 17 C -0.174 4.174 18 C -0.088 4.088 19 C -0.054 4.054 20 C -0.108 4.108 21 N -0.152 5.152 22 C -0.122 4.122 23 C -0.104 4.104 24 N -0.150 5.150 25 C 0.015 3.985 26 H 0.090 0.910 27 O -0.376 6.376 28 C -0.030 4.030 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.237 0.763 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.187 0.813 40 H 0.186 0.814 41 H 0.187 0.813 42 H 0.224 0.776 43 H 0.045 0.955 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 22.177 0.051 -0.114 22.178 hybrid contribution -0.299 1.898 -0.146 1.927 sum 21.879 1.949 -0.260 21.967 Atomic orbital electron populations 1.69811 1.05716 1.26721 1.52558 1.25359 0.95266 0.97634 0.99221 0.86963 0.79724 0.84500 0.77124 1.21567 1.19806 1.22986 1.18925 0.83939 0.94688 1.41588 0.89481 1.44279 1.07872 1.35175 1.45247 1.20870 0.92195 0.91463 0.93222 1.22328 0.99817 0.97662 0.98744 1.20824 0.88089 0.91463 0.93651 0.89739 1.46010 1.10953 1.23575 1.55462 1.20469 0.82761 0.86449 0.80111 1.90670 1.79297 1.22471 1.50499 1.21561 0.93889 0.99525 1.02437 1.20252 0.91121 0.97698 0.99734 1.22391 0.95357 0.95921 0.91691 1.23683 0.90594 0.95340 1.01152 1.68450 1.32118 1.07497 1.07102 1.23765 0.97293 0.98669 0.92474 1.23829 0.90981 0.94562 1.01073 1.68304 1.32320 1.07872 1.06537 1.22765 0.93740 0.91092 0.90879 0.90954 1.86436 1.39406 1.49222 1.62524 1.22067 0.97552 0.92966 0.90391 0.92597 0.91496 0.95751 0.91203 0.90729 0.76308 0.87868 0.89191 0.88923 0.88557 0.81271 0.81427 0.81263 0.77623 0.95453 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.75 13.97 55.49 0.78 -25.97 16 2 C 0.02 0.68 5.25 -17.43 -0.09 0.59 16 3 Si 0.89 21.21 24.35 -169.99 -4.14 17.07 16 4 H -0.29 -6.47 6.40 56.52 0.36 -6.11 16 5 H -0.27 -6.42 6.93 56.52 0.39 -6.03 16 6 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 7 C -0.26 -6.99 10.03 -15.06 -0.15 -7.14 16 8 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 9 N -0.60 -13.27 2.75 -172.58 -0.47 -13.75 16 10 C 0.15 2.78 6.23 -3.93 -0.02 2.76 16 11 C -0.15 -2.39 5.75 -26.83 -0.15 -2.55 16 12 C 0.16 2.67 2.47 -67.89 -0.17 2.50 16 13 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 14 N -0.71 -10.57 4.16 -53.76 -0.22 -10.80 16 15 C 0.52 7.33 7.79 -10.98 -0.09 7.25 16 16 O -0.55 -9.31 15.64 5.56 0.09 -9.22 16 17 C -0.13 -1.45 5.56 -27.88 -0.16 -1.61 16 18 C -0.05 -0.49 4.92 -27.88 -0.14 -0.62 16 19 C 0.09 0.85 6.17 -82.41 -0.51 0.34 16 20 C 0.05 0.47 10.85 -17.37 -0.19 0.28 16 21 N -0.44 -4.22 10.50 -13.06 -0.14 -4.36 16 22 C 0.04 0.28 11.22 -17.38 -0.20 0.09 16 23 C 0.06 0.44 11.23 -17.37 -0.19 0.24 16 24 N -0.43 -4.52 10.07 -9.29 -0.09 -4.61 16 25 C 0.08 1.28 3.36 -26.61 -0.09 1.19 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 27 O -0.57 -8.74 13.21 -35.23 -0.47 -9.20 16 28 C 0.10 1.92 3.53 -3.71 -0.01 1.90 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 31 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.40 5.87 6.87 -40.82 -0.28 5.59 16 35 H 0.10 1.13 7.97 -51.93 -0.41 0.71 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.83 7.84 -51.93 -0.41 0.42 16 38 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 39 H 0.17 1.11 7.95 -52.49 -0.42 0.69 16 40 H 0.17 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.38 4.51 9.08 45.56 0.41 4.93 16 43 H 0.03 0.54 5.70 -51.93 -0.30 0.24 16 44 H 0.08 1.73 4.52 -51.93 -0.23 1.49 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -33.32 355.78 -6.87 -40.20 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.41 Total: 10.05 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.16 Total: 5.23 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.15 Total: -59.49 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.38 Total: -18.42 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.14 Total: 17.07 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.32 -6.87 -40.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100067465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.026 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds