Wall clock time and date at job start Fri Apr 10 2020 18:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99870 * 2 1 4 4 H 1.48498 * 109.47196 * 93.06576 * 3 2 1 5 5 H 1.48501 * 109.47021 * 213.06793 * 3 2 1 6 6 H 1.48503 * 109.46892 * 333.06630 * 3 2 1 7 7 C 1.38812 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00153 * 18.89648 * 7 2 1 9 9 N 1.36933 * 119.99972 * 198.89571 * 7 2 1 10 10 C 1.46920 * 120.63252 * 209.28349 * 9 7 2 11 11 C 1.52764 * 109.01317 * 233.58698 * 10 9 7 12 12 C 1.53037 * 109.38332 * 305.58780 * 11 10 9 13 13 H 1.08998 * 109.46585 * 181.25793 * 12 11 10 14 14 N 1.46502 * 109.46081 * 301.22247 * 12 11 10 15 15 C 1.34775 * 119.99593 * 275.06406 * 14 12 11 16 16 O 1.21277 * 120.00192 * 0.02562 * 15 14 12 17 17 C 1.50706 * 119.99938 * 179.97438 * 15 14 12 18 18 C 1.53002 * 109.47113 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.47228 * 180.02562 * 18 17 15 20 20 C 1.38390 * 119.99918 * 125.00196 * 19 18 17 21 21 N 1.32123 * 119.99670 * 179.97438 * 20 19 18 22 22 C 1.32148 * 120.00414 * 0.02562 * 21 20 19 23 23 C 1.38347 * 120.00114 * 359.97438 * 22 21 20 24 24 N 1.32121 * 120.00216 * 304.72947 * 19 18 17 25 25 C 1.53042 * 109.53718 * 61.23470 * 12 11 10 26 26 H 1.09007 * 109.52074 * 58.60544 * 25 12 11 27 27 O 1.42903 * 109.49916 * 178.68402 * 25 12 11 28 28 C 1.46931 * 120.63088 * 29.56725 * 9 7 2 29 29 H 0.96996 * 120.00345 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58834 * 353.42213 * 10 9 7 31 31 H 1.09004 * 109.58533 * 113.84386 * 10 9 7 32 32 H 1.09005 * 109.56242 * 185.55271 * 11 10 9 33 33 H 1.09000 * 109.38341 * 65.51317 * 11 10 9 34 34 H 0.96999 * 120.00233 * 95.06299 * 14 12 11 35 35 H 1.08994 * 109.47548 * 300.00518 * 17 15 14 36 36 H 1.09006 * 109.46712 * 60.00503 * 17 15 14 37 37 H 1.08994 * 109.47341 * 300.00650 * 18 17 15 38 38 H 1.09006 * 109.46916 * 60.00634 * 18 17 15 39 39 H 1.07996 * 120.00353 * 359.95850 * 20 19 18 40 40 H 1.07999 * 120.00724 * 180.02562 * 22 21 20 41 41 H 1.07997 * 120.00034 * 180.02562 * 23 22 21 42 42 H 0.96697 * 114.00117 * 179.84266 * 27 25 12 43 43 H 1.08996 * 109.58611 * 246.15673 * 28 9 7 44 44 H 1.08998 * 109.58480 * 6.58113 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5625 2.0091 1.3980 5 1 3.5138 1.4598 -0.7639 6 1 1.4166 2.6706 -0.6342 7 6 2.0103 -1.2021 0.0005 8 1 1.5140 -2.1124 -0.3020 9 7 3.3243 -1.2339 0.3846 10 6 4.2418 -2.2392 -0.1686 11 6 4.9206 -2.9801 0.9821 12 6 5.5868 -1.9669 1.9158 13 1 6.0905 -2.4954 2.7251 14 7 6.5665 -1.1800 1.1628 15 6 7.8177 -1.6498 0.9887 16 8 8.1323 -2.7243 1.4550 17 6 8.8255 -0.8406 0.2137 18 6 10.1561 -1.5943 0.1651 19 6 11.1640 -0.7849 -0.6093 20 6 12.3797 -0.4597 -0.0336 21 7 13.2636 0.2496 -0.7129 22 6 12.9866 0.6489 -1.9417 23 6 11.7712 0.3238 -2.5173 24 7 10.8892 -0.3902 -1.8399 25 6 4.5239 -1.0335 2.5001 26 1 3.7808 -1.6205 3.0400 27 8 5.1426 -0.1074 3.3954 28 6 3.8420 -0.2671 1.3624 29 1 -0.4850 0.8400 -0.0004 30 1 3.6822 -2.9485 -0.7783 31 1 4.9985 -1.7466 -0.7793 32 1 5.6749 -3.6591 0.5844 33 1 4.1743 -3.5495 1.5361 34 1 6.3148 -0.3208 0.7895 35 1 8.4605 -0.6811 -0.8009 36 1 8.9716 0.1225 0.7029 37 1 10.5208 -1.7534 1.1799 38 1 10.0103 -2.5576 -0.3238 39 1 12.6059 -0.7854 0.9709 40 1 13.7092 1.2283 -2.4972 41 1 11.5450 0.6498 -3.5218 42 1 4.5271 0.5179 3.8017 43 1 4.5653 0.3896 0.8792 44 1 3.0185 0.3245 1.7625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100067465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:43 Heat of formation + Delta-G solvation = -42.126461 kcal Electronic energy + Delta-G solvation = -27068.180297 eV Core-core repulsion = 23213.156104 eV Total energy + Delta-G solvation = -3855.024193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.05319 -41.28226 -39.54845 -36.99667 -35.99730 -35.62224 -34.46690 -33.87835 -32.22050 -31.25389 -30.53851 -27.41946 -26.54357 -25.44324 -24.55041 -23.52373 -23.15095 -21.59878 -20.41456 -18.95508 -18.62884 -18.33129 -18.28832 -17.79728 -17.21739 -16.83412 -16.65121 -16.49688 -16.03351 -15.78004 -15.39667 -15.29827 -15.05174 -14.76211 -14.44281 -14.28577 -13.98889 -13.84234 -13.42187 -13.34190 -13.16076 -13.03031 -12.73021 -12.60357 -12.56238 -12.31585 -12.27239 -12.01063 -11.95082 -11.69612 -11.38849 -11.16923 -10.84870 -10.62073 -10.15854 -10.04105 -9.99474 -8.94743 -8.17663 -5.54365 -0.17420 0.16443 1.27600 1.42841 1.51084 1.69362 2.20444 2.39785 2.74713 2.90979 3.10873 3.15113 3.35450 3.38585 3.52887 3.70310 3.81945 3.94057 3.96574 4.09298 4.12302 4.18974 4.23121 4.35676 4.42005 4.47466 4.55537 4.61575 4.66298 4.71505 4.87030 4.90732 4.95124 4.98760 5.06152 5.08028 5.26286 5.45921 5.54279 5.84586 6.12089 6.33048 6.56392 6.72222 6.83612 6.89550 7.26583 7.57030 7.96794 9.01936 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017003 B = 0.003056 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.348683 B = 9160.498066 C = 9826.357255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.033 4.033 3 Si 0.949 3.051 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.314 1.314 7 C -0.252 4.252 8 H 0.051 0.949 9 N -0.611 5.611 10 C 0.148 3.852 11 C -0.134 4.134 12 C 0.168 3.832 13 H 0.082 0.918 14 N -0.709 5.709 15 C 0.516 3.484 16 O -0.578 6.578 17 C -0.123 4.123 18 C -0.043 4.043 19 C 0.075 3.925 20 C 0.047 3.953 21 N -0.461 5.461 22 C 0.041 3.959 23 C 0.052 3.948 24 N -0.461 5.461 25 C 0.091 3.909 26 H 0.067 0.933 27 O -0.569 6.569 28 C 0.096 3.904 29 H 0.262 0.738 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.405 0.595 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.187 0.813 40 H 0.200 0.800 41 H 0.198 0.802 42 H 0.393 0.607 43 H 0.041 0.959 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.429 2.483 -0.115 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.228 4.228 3 Si 0.777 3.223 4 H -0.188 1.188 5 H -0.187 1.187 6 H -0.243 1.243 7 C -0.382 4.382 8 H 0.069 0.931 9 N -0.337 5.337 10 C 0.023 3.977 11 C -0.174 4.174 12 C 0.063 3.937 13 H 0.100 0.900 14 N -0.360 5.360 15 C 0.305 3.695 16 O -0.458 6.458 17 C -0.163 4.163 18 C -0.081 4.081 19 C -0.065 4.065 20 C -0.112 4.112 21 N -0.176 5.176 22 C -0.118 4.118 23 C -0.108 4.108 24 N -0.177 5.177 25 C 0.030 3.970 26 H 0.085 0.915 27 O -0.376 6.376 28 C -0.030 4.030 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.241 0.759 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.204 0.796 40 H 0.217 0.783 41 H 0.215 0.785 42 H 0.243 0.757 43 H 0.058 0.942 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 25.060 1.466 0.054 25.103 hybrid contribution -1.138 1.391 -0.230 1.812 sum 23.921 2.857 -0.176 24.092 Atomic orbital electron populations 1.69954 1.07562 1.27393 1.55261 1.25998 0.95843 1.01166 0.99813 0.85936 0.78303 0.79631 0.78423 1.18813 1.18685 1.24344 1.18819 0.85730 0.93421 1.40205 0.93089 1.44323 1.06816 1.36268 1.46307 1.20946 0.91766 0.90826 0.94116 1.22184 0.99713 0.97595 0.97880 1.20681 0.88109 0.91334 0.93578 0.90040 1.46000 1.11031 1.23566 1.55384 1.20999 0.82764 0.86206 0.79575 1.90661 1.79687 1.23819 1.51672 1.21514 0.93224 0.99648 1.01919 1.20157 0.90830 0.97021 1.00136 1.22307 0.95667 0.96634 0.91855 1.23940 0.90246 0.95101 1.01920 1.68502 1.32611 1.08261 1.08203 1.24317 0.97749 0.97839 0.91917 1.24333 0.90712 0.93758 1.02035 1.68272 1.33612 1.08798 1.07021 1.22428 0.93630 0.90887 0.90035 0.91468 1.86423 1.39811 1.49363 1.61984 1.22106 0.97277 0.92790 0.90837 0.92861 0.92430 0.94586 0.90348 0.90982 0.75911 0.87688 0.87589 0.88198 0.89861 0.79593 0.78306 0.78502 0.75739 0.94167 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.03 13.97 21.65 0.30 -57.73 16 2 C -0.03 -1.84 5.25 84.86 0.45 -1.40 16 3 Si 0.95 43.34 24.35 68.60 1.67 45.01 16 4 H -0.26 -10.78 6.40 99.48 0.64 -10.15 16 5 H -0.26 -11.41 6.93 99.48 0.69 -10.72 16 6 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 7 C -0.25 -13.61 10.03 84.03 0.84 -12.76 16 8 H 0.05 3.06 8.06 -2.91 -0.02 3.03 16 9 N -0.61 -26.55 2.75 -699.92 -1.92 -28.48 16 10 C 0.15 5.43 6.23 86.22 0.54 5.97 16 11 C -0.13 -4.23 5.75 30.53 0.18 -4.05 16 12 C 0.17 5.13 2.47 45.02 0.11 5.24 16 13 H 0.08 2.61 7.58 -2.39 -0.02 2.59 16 14 N -0.71 -19.43 4.16 -442.41 -1.84 -21.27 16 15 C 0.52 13.63 7.79 87.66 0.68 14.32 16 16 O -0.58 -18.65 15.64 -3.02 -0.05 -18.70 16 17 C -0.12 -2.40 5.56 29.85 0.17 -2.24 16 18 C -0.04 -0.78 4.92 29.85 0.15 -0.63 16 19 C 0.07 1.35 6.17 42.55 0.26 1.61 16 20 C 0.05 0.76 10.85 84.69 0.92 1.68 16 21 N -0.46 -7.98 10.50 -195.23 -2.05 -10.03 16 22 C 0.04 0.52 11.22 84.67 0.95 1.47 16 23 C 0.05 0.69 11.23 84.67 0.95 1.64 16 24 N -0.46 -8.74 10.07 -183.29 -1.84 -10.58 16 25 C 0.09 2.89 3.36 30.67 0.10 2.99 16 26 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 27 O -0.57 -15.67 13.21 -148.98 -1.97 -17.64 16 28 C 0.10 3.59 3.53 86.36 0.30 3.89 16 29 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 31 H 0.04 1.26 7.74 -2.38 -0.02 1.24 16 32 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.40 10.62 6.87 -92.71 -0.64 9.98 16 35 H 0.10 2.06 7.97 -2.39 -0.02 2.04 16 36 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.10 1.64 7.84 -2.39 -0.02 1.62 16 38 H 0.08 1.73 8.10 -2.38 -0.02 1.71 16 39 H 0.19 2.13 7.95 -2.91 -0.02 2.10 16 40 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.20 1.30 8.06 -2.91 -0.02 1.27 16 42 H 0.39 8.13 9.08 -74.06 -0.67 7.46 16 43 H 0.04 1.44 5.70 -2.39 -0.01 1.42 16 44 H 0.06 2.59 4.52 -2.39 -0.01 2.58 16 Total: -1.00 -72.17 355.78 -1.46 -73.63 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.36 Total: 28.05 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 6.60 Total: 17.72 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -7.36 Total: -128.08 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -2.02 Total: -36.34 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.67 Total: 45.01 kcal Total: -72.17 -1.46 -73.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100067465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.504 kcal (2) G-P(sol) polarization free energy of solvation -72.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds