Wall clock time and date at job start Fri Apr 10 2020 18:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32224 * 120.50845 * 2 1 4 4 C 1.31901 * 121.13772 * 180.31662 * 3 2 1 5 5 N 1.31755 * 122.20133 * 359.70225 * 4 3 2 6 6 C 1.32744 * 120.86851 * 359.97438 * 5 4 3 7 7 O 1.35276 * 120.61667 * 179.97438 * 6 5 4 8 8 C 1.39761 * 120.50705 * 179.74300 * 2 1 3 9 9 C 1.47539 * 120.98412 * 359.96913 * 8 2 1 10 10 O 1.21581 * 120.00111 * 269.72946 * 9 8 2 11 11 N 1.34779 * 119.99380 * 89.72117 * 9 8 2 12 12 C 1.48147 * 127.83163 * 179.97438 * 11 9 8 13 13 C 1.54384 * 104.61693 * 140.42308 * 12 11 9 14 14 H 1.08995 * 110.34780 * 142.73822 * 13 12 11 15 15 C 1.52997 * 110.43683 * 264.95160 * 13 12 11 16 16 N 1.46503 * 109.47239 * 290.59221 * 15 13 12 17 17 C 1.36928 * 120.00226 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00192 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00375 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99723 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00522 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47335 * 89.99773 * 21 19 17 23 23 H 1.48496 * 109.47176 * 209.99779 * 21 19 17 24 24 H 1.48499 * 109.46929 * 329.99961 * 21 19 17 25 25 C 1.54288 * 104.96070 * 23.86870 * 13 12 11 26 26 H 1.09004 * 110.34430 * 241.02783 * 25 13 12 27 27 C 1.52997 * 110.34638 * 118.87030 * 25 13 12 28 28 C 1.48307 * 127.77498 * 359.93899 * 11 9 8 29 29 H 1.09002 * 109.47012 * 270.26148 * 1 2 3 30 30 H 1.09002 * 109.47242 * 30.25684 * 1 2 3 31 31 H 1.09006 * 109.47312 * 150.26093 * 1 2 3 32 32 H 1.08003 * 118.89994 * 179.72542 * 4 3 2 33 33 H 0.96705 * 113.99903 * 270.02253 * 7 6 5 34 34 H 1.09001 * 110.40685 * 21.63916 * 12 11 9 35 35 H 1.08996 * 110.40826 * 259.20858 * 12 11 9 36 36 H 1.09005 * 109.47068 * 50.58687 * 15 13 12 37 37 H 1.08993 * 109.47988 * 170.58504 * 15 13 12 38 38 H 0.97004 * 119.99419 * 359.97438 * 16 15 13 39 39 H 0.96997 * 120.00689 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.47153 * 61.47473 * 27 25 13 41 41 H 1.09001 * 109.46832 * 301.47664 * 27 25 13 42 42 H 1.09004 * 109.47261 * 181.47645 * 27 25 13 43 43 H 1.09006 * 110.38039 * 100.78726 * 28 11 9 44 44 H 1.08995 * 110.50925 * 338.30546 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1392 0.0000 4 6 3.4972 1.1537 -0.0062 5 7 4.2115 0.0466 -0.0070 6 6 3.6234 -1.1434 -0.0008 7 8 4.3618 -2.2769 -0.0021 8 6 2.2165 -1.2041 0.0054 9 6 1.5123 -2.5006 0.0119 10 8 1.2270 -3.0322 1.0675 11 7 1.1852 -3.0955 -1.1524 12 6 0.4842 -4.3859 -1.3480 13 6 -0.4674 -4.1359 -2.5377 14 1 -0.5251 -5.0222 -3.1695 15 6 -1.8603 -3.7503 -2.0358 16 7 -2.4915 -4.9125 -1.4057 17 6 -3.7507 -4.8059 -0.8784 18 1 -4.2785 -3.8648 -0.9267 19 6 -4.3490 -5.9073 -0.2819 20 7 -3.7061 -7.0543 -0.2234 21 14 -6.0665 -5.7617 0.4380 22 1 -7.0702 -6.0933 -0.6050 23 1 -6.2071 -6.7034 1.5775 24 1 -6.2876 -4.3725 0.9138 25 6 0.1662 -2.9634 -3.3150 26 1 -0.5148 -2.1127 -3.3391 27 6 0.5222 -3.3991 -4.7378 28 6 1.4454 -2.6052 -2.5277 29 1 -0.3633 0.0047 1.0277 30 1 -0.3634 0.8877 -0.5178 31 1 -0.3634 -0.8923 -0.5098 32 1 4.0087 2.1049 -0.0105 33 1 4.5719 -2.6084 -0.8859 34 1 -0.0839 -4.6489 -0.4556 35 1 1.1978 -5.1731 -1.5910 36 1 -1.7736 -2.9443 -1.3070 37 1 -2.4698 -3.4166 -2.8755 38 1 -2.0173 -5.7576 -1.3620 39 1 -4.1242 -7.8241 0.1930 40 1 -0.3846 -3.6972 -5.2641 41 1 1.2127 -4.2415 -4.6978 42 1 0.9921 -2.5689 -5.2652 43 1 2.3097 -3.1138 -2.9548 44 1 1.6008 -1.5264 -2.5255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106566250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:59 Heat of formation + Delta-G solvation = -8.825372 kcal Electronic energy + Delta-G solvation = -27759.546701 eV Core-core repulsion = 23905.966551 eV Total energy + Delta-G solvation = -3853.580150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.72098 -39.91781 -38.15543 -37.86978 -34.67548 -34.46370 -32.97109 -32.14223 -31.43952 -29.32477 -28.75111 -26.58162 -26.13461 -24.76679 -23.35000 -23.12443 -21.32514 -20.18979 -19.58562 -19.26833 -18.39091 -17.63822 -16.95453 -16.66936 -16.15700 -15.64618 -15.31285 -14.77584 -14.56283 -14.42016 -13.85275 -13.63220 -13.57655 -13.43326 -13.10932 -12.95234 -12.92591 -12.83159 -12.76976 -12.34080 -12.05580 -11.75672 -11.59200 -11.50090 -11.13116 -10.89727 -10.71154 -10.68488 -10.59918 -10.36736 -10.05493 -10.00634 -9.78324 -9.66658 -9.64930 -8.89101 -8.74266 -6.92966 -5.76090 -3.04986 0.25822 0.53613 2.39262 2.75283 2.92813 3.22658 3.44508 3.49853 3.51680 3.62431 3.88930 4.15024 4.43231 4.55876 4.61529 4.71025 4.77009 4.84347 5.00000 5.20095 5.23974 5.33498 5.35040 5.39768 5.41918 5.57199 5.59874 5.63120 5.66952 5.86967 5.92213 6.01396 6.04300 6.10878 6.12779 6.35981 6.39381 6.46505 6.67575 6.81449 6.92158 7.44500 7.61772 7.70061 8.03313 8.42336 9.53811 10.09972 10.44313 11.46723 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.003579 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.240294 B = 7821.067863 C = 8398.071318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.230 3.770 3 N -0.524 5.524 4 C 0.332 3.668 5 N -0.543 5.543 6 C 0.396 3.604 7 O -0.466 6.466 8 C -0.240 4.240 9 C 0.594 3.406 10 O -0.510 6.510 11 N -0.613 5.613 12 C 0.110 3.890 13 C -0.104 4.104 14 H 0.091 0.909 15 C 0.163 3.837 16 N -0.731 5.731 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.100 4.100 26 H 0.084 0.916 27 C -0.141 4.141 28 C 0.103 3.897 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.206 0.794 33 H 0.410 0.590 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.017 0.983 37 H 0.021 0.979 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.278 14.402 -8.559 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 N -0.240 5.240 4 C 0.045 3.955 5 N -0.268 5.268 6 C 0.208 3.792 7 O -0.273 6.273 8 C -0.249 4.249 9 C 0.379 3.621 10 O -0.384 6.384 11 N -0.347 5.347 12 C -0.011 4.011 13 C -0.124 4.124 14 H 0.109 0.891 15 C 0.036 3.964 16 N -0.376 5.376 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.217 1.217 24 H -0.208 1.208 25 C -0.120 4.120 26 H 0.103 0.897 27 C -0.198 4.198 28 C -0.020 4.020 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.223 0.777 33 H 0.270 0.730 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.035 0.965 37 H 0.038 0.962 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.445 15.037 -7.208 23.420 hybrid contribution -0.941 -1.100 -0.009 1.448 sum 15.504 13.936 -7.217 22.061 Atomic orbital electron populations 1.20982 0.86533 1.04925 1.05029 1.21885 0.97932 0.85834 0.85938 1.68325 1.10126 1.29328 1.16257 1.24977 0.86309 0.96080 0.88163 1.68053 1.42585 0.98623 1.17510 1.19352 0.85453 0.85940 0.88451 1.84709 1.72550 1.35967 1.34096 1.21739 0.95035 0.96839 1.11276 1.17054 0.78857 0.83182 0.82965 1.90897 1.53267 1.64291 1.29944 1.48962 1.57850 1.23136 1.04711 1.22546 0.94288 0.83712 1.00577 1.22433 0.96023 0.98218 0.95722 0.89096 1.20673 0.89407 0.91373 0.94973 1.42345 1.16896 1.08876 1.69434 1.19181 0.91860 0.96093 1.29996 0.91285 1.24724 0.98617 0.95810 1.01636 1.69646 1.37658 1.00916 1.49841 0.86204 0.84438 0.77119 0.78515 1.21751 1.21747 1.20767 1.22113 0.95832 0.99178 0.94841 0.89742 1.21814 1.02038 1.01009 0.94989 1.22561 0.98367 0.99293 0.81796 0.88423 0.88868 0.89433 0.77740 0.73013 0.88069 0.91219 0.96478 0.96160 0.78266 0.93494 0.91722 0.92371 0.92756 0.90863 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.85 36.01 0.35 -0.94 16 2 C 0.23 2.76 6.86 -81.85 -0.56 2.20 16 3 N -0.52 -5.75 10.36 -10.52 -0.11 -5.86 16 4 C 0.33 3.15 12.27 -92.10 -1.13 2.02 16 5 N -0.54 -6.09 10.45 -14.32 -0.15 -6.24 16 6 C 0.40 4.79 7.85 -16.18 -0.13 4.67 16 7 O -0.47 -5.12 13.10 -17.52 -0.23 -5.35 16 8 C -0.24 -3.13 4.57 -104.56 -0.48 -3.61 16 9 C 0.59 9.26 5.61 -12.47 -0.07 9.19 16 10 O -0.51 -10.48 17.37 5.29 0.09 -10.39 16 11 N -0.61 -8.14 3.32 -170.38 -0.57 -8.70 16 12 C 0.11 1.66 6.48 -2.41 -0.02 1.65 16 13 C -0.10 -1.48 2.74 -89.22 -0.24 -1.72 16 14 H 0.09 1.29 7.71 -51.93 -0.40 0.89 16 15 C 0.16 3.09 5.37 -4.04 -0.02 3.07 16 16 N -0.73 -17.99 5.21 -59.91 -0.31 -18.31 16 17 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 18 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 21 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C -0.10 -1.03 3.30 -89.20 -0.29 -1.32 16 26 H 0.08 0.89 7.71 -51.93 -0.40 0.49 16 27 C -0.14 -1.16 8.91 37.16 0.33 -0.83 16 28 C 0.10 0.97 6.46 -2.30 -0.01 0.96 16 29 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.07 7.18 -51.93 -0.37 0.70 16 32 H 0.21 1.10 8.06 -52.48 -0.42 0.67 16 33 H 0.41 2.30 9.06 45.56 0.41 2.71 16 34 H 0.10 1.98 7.31 -51.93 -0.38 1.60 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.38 9.89 7.61 -40.82 -0.31 9.58 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.54 7.85 -51.93 -0.41 0.14 16 44 H 0.07 0.59 7.45 -51.93 -0.39 0.21 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -35.94 370.70 -8.10 -44.04 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.60 Total: 7.09 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -2.52 Total: 8.03 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -0.41 Total: -66.53 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.14 Total: -15.74 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.94 -8.10 -44.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106566250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.215 kcal (2) G-P(sol) polarization free energy of solvation -35.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds