Wall clock time and date at job start Fri Apr 10 2020 18:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38766 * 119.90820 * 2 1 4 4 N 1.31778 * 120.12636 * 180.27220 * 3 2 1 5 5 C 1.33029 * 119.91988 * 359.45102 * 4 3 2 6 6 C 1.48149 * 120.09465 * 180.24743 * 5 4 3 7 7 O 1.21521 * 120.00190 * 180.31992 * 6 5 4 8 8 N 1.34775 * 119.99908 * 0.32743 * 6 5 4 9 9 C 1.46497 * 120.00137 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47181 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.50823 * 60.00403 * 10 9 8 12 12 C 1.53299 * 109.50955 * 180.09904 * 10 9 8 13 13 N 1.47151 * 108.37879 * 172.22631 * 12 10 9 14 14 C 1.36946 * 120.97789 * 129.44801 * 13 12 10 15 15 H 1.08003 * 119.99297 * 206.23189 * 14 13 12 16 16 C 1.38805 * 120.00053 * 26.22865 * 14 13 12 17 17 N 1.31622 * 120.00136 * 16.93160 * 16 14 13 18 18 Si 1.86796 * 120.00066 * 196.92329 * 16 14 13 19 19 H 1.48503 * 109.47330 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47069 * 120.00352 * 18 16 14 21 21 H 1.48497 * 109.47537 * 240.00260 * 18 16 14 22 22 C 1.47151 * 118.04015 * 309.47035 * 13 12 10 23 23 C 1.53292 * 108.38839 * 50.53128 * 22 13 12 24 24 O 1.42952 * 109.51494 * 299.89887 * 10 9 8 25 25 C 1.39405 * 119.81174 * 0.56951 * 5 4 3 26 26 N 1.32108 * 119.87582 * 359.70652 * 25 5 4 27 27 H 1.08997 * 109.46703 * 89.99387 * 1 2 3 28 28 H 1.08994 * 109.47503 * 209.99911 * 1 2 3 29 29 H 1.09000 * 109.46763 * 330.00157 * 1 2 3 30 30 H 1.08001 * 119.93886 * 0.02562 * 3 2 1 31 31 H 0.96997 * 120.00113 * 359.97438 * 8 6 5 32 32 H 1.09003 * 109.47493 * 299.99757 * 9 8 6 33 33 H 1.08998 * 109.46961 * 59.99708 * 9 8 6 34 34 H 1.08993 * 109.47294 * 59.99833 * 11 10 9 35 35 H 1.09001 * 109.46796 * 179.97438 * 11 10 9 36 36 H 1.09005 * 109.46945 * 299.99341 * 11 10 9 37 37 H 1.08992 * 109.68472 * 291.94826 * 12 10 9 38 38 H 1.09004 * 109.68105 * 52.47301 * 12 10 9 39 39 H 0.96996 * 120.00368 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.68269 * 170.26510 * 22 13 12 41 41 H 1.09009 * 109.67602 * 290.81037 * 22 13 12 42 42 H 1.09004 * 109.50596 * 67.62224 * 23 22 13 43 43 H 1.08992 * 109.51418 * 187.72668 * 23 22 13 44 44 H 1.08001 * 120.06328 * 179.67899 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1990 1.2029 0.0000 4 7 3.5167 1.2079 -0.0054 5 6 4.1847 0.0575 0.0002 6 6 5.6662 0.0586 -0.0004 7 8 6.2746 -0.9933 -0.0011 8 7 6.3391 1.2263 0.0002 9 6 7.8041 1.2276 0.0002 10 6 8.3129 2.6705 0.0003 11 6 7.8028 3.3921 1.2493 12 6 9.8459 2.6728 -0.0022 13 7 10.3075 4.0572 -0.1910 14 6 11.2382 4.6104 0.6475 15 1 11.2670 5.6805 0.7913 16 6 12.1444 3.7960 1.3125 17 7 12.3412 2.5602 0.9046 18 14 13.0848 4.4540 2.7863 19 1 12.6850 5.8614 3.0405 20 1 12.7738 3.6281 3.9808 21 1 14.5426 4.3952 2.5099 22 6 9.7392 4.8297 -1.3070 23 6 8.2115 4.7223 -1.2411 24 8 7.8384 3.3442 -1.1678 25 6 3.4866 -1.1492 -0.0003 26 7 2.1656 -1.1453 -0.0004 27 1 -0.3632 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6565 2.1367 0.0004 31 1 5.8535 2.0660 0.0005 32 1 8.1679 0.7137 0.8900 33 1 8.1678 0.7144 -0.8899 34 1 8.1665 2.8790 2.1394 35 1 8.1661 4.4199 1.2488 36 1 6.7128 3.3917 1.2494 37 1 10.2151 2.2892 0.9489 38 1 10.2126 2.0486 -0.8171 39 1 12.9747 1.9912 1.3690 40 1 10.0380 5.8744 -1.2201 41 1 10.0953 4.4232 -2.2537 42 1 7.8478 5.2447 -0.3562 43 1 7.7760 5.1712 -2.1337 44 1 4.0248 -2.0856 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107712349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:01 Heat of formation + Delta-G solvation = -4.943916 kcal Electronic energy + Delta-G solvation = -27180.525464 eV Core-core repulsion = 23327.113627 eV Total energy + Delta-G solvation = -3853.411837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55884 -39.63441 -38.68220 -35.16999 -34.82802 -34.32770 -33.16996 -31.74331 -31.26396 -28.95290 -27.94991 -26.49743 -25.68199 -24.88083 -23.67189 -23.23017 -21.42816 -20.66488 -18.91841 -18.28285 -17.90683 -16.96335 -16.27038 -15.95108 -15.75175 -15.53877 -15.16752 -15.01077 -14.60057 -14.35902 -14.05588 -13.85610 -13.51921 -13.26770 -13.13466 -13.00619 -12.86834 -12.76478 -12.48560 -11.98431 -11.92441 -11.58423 -11.49817 -11.20026 -11.03611 -10.84648 -10.67571 -10.41722 -10.31155 -10.24293 -9.98029 -9.57560 -9.57034 -9.39566 -9.05654 -8.87049 -8.55310 -6.75490 -5.86004 -3.29264 0.09538 0.72096 2.60726 3.03016 3.32545 3.40772 3.42403 3.52562 3.67428 3.75649 4.06538 4.24029 4.42303 4.45676 4.68780 4.85758 5.06992 5.12669 5.13006 5.22187 5.32748 5.45987 5.48879 5.51419 5.68881 5.91839 5.93462 5.94664 5.99391 6.07068 6.13475 6.29041 6.43948 6.53380 6.64339 6.74977 6.79844 6.82191 7.05990 7.28463 7.44935 7.62180 7.69987 7.87431 8.18369 8.31596 9.09381 9.72487 10.29578 11.22061 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.002817 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.954870 B = 9937.667792 C =10360.015926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.096 3.904 3 C 0.051 3.949 4 N -0.407 5.407 5 C 0.027 3.973 6 C 0.569 3.431 7 O -0.533 6.533 8 N -0.692 5.692 9 C 0.137 3.863 10 C 0.078 3.922 11 C -0.163 4.163 12 C 0.160 3.840 13 N -0.591 5.591 14 C -0.253 4.253 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.290 1.290 22 C 0.109 3.891 23 C 0.047 3.953 24 O -0.384 6.384 25 C 0.114 3.886 26 N -0.443 5.443 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.176 0.824 31 H 0.413 0.587 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.097 0.903 38 H 0.030 0.970 39 H 0.255 0.745 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.048 0.952 43 H 0.080 0.920 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.081 -1.811 -1.499 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.046 4.046 3 C -0.112 4.112 4 N -0.124 5.124 5 C -0.114 4.114 6 C 0.351 3.649 7 O -0.410 6.410 8 N -0.343 5.343 9 C 0.013 3.987 10 C 0.037 3.963 11 C -0.220 4.220 12 C 0.033 3.967 13 N -0.314 5.314 14 C -0.382 4.382 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.216 1.216 22 C -0.017 4.017 23 C -0.031 4.031 24 O -0.303 6.303 25 C -0.045 4.045 26 N -0.158 5.158 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.193 0.807 31 H 0.250 0.750 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.115 0.885 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -21.517 -2.747 -1.573 21.749 hybrid contribution 0.548 0.897 0.872 1.365 sum -20.970 -1.850 -0.701 21.063 Atomic orbital electron populations 1.20756 0.87264 1.04302 1.03828 1.22673 0.98848 0.89792 0.93267 1.23696 0.90212 0.99456 0.97862 1.68369 1.09159 1.28728 1.06100 1.22277 0.96119 0.90919 1.02067 1.17618 0.84804 0.84625 0.77818 1.90813 1.68274 1.31234 1.50685 1.45852 1.08025 1.08578 1.71797 1.21491 0.77841 0.96103 1.03257 1.22550 0.98404 0.89895 0.85429 1.22217 0.99114 1.02879 0.97828 1.21295 0.85882 0.86705 1.02806 1.44004 1.46639 1.10774 1.30006 1.19200 1.07968 0.92228 1.18838 0.91364 1.25039 0.97123 0.96801 1.00613 1.70021 1.36822 1.07737 1.39967 0.86225 0.79475 0.78332 0.82753 1.20264 1.21466 1.21648 1.21603 0.91741 0.96612 0.91780 1.23032 0.97057 0.82662 1.00396 1.87815 1.76344 1.23388 1.42764 1.23843 0.89829 0.99455 0.91401 1.68482 1.08329 1.28978 1.10026 0.89527 0.89855 0.89829 0.80694 0.75028 0.89637 0.90416 0.91884 0.90750 0.93794 0.88483 0.95194 0.93466 0.92027 0.95641 0.93360 0.90173 0.79886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.19 36.01 0.37 -0.11 16 2 C 0.10 0.82 6.79 -82.28 -0.56 0.26 16 3 C 0.05 0.44 10.88 -17.38 -0.19 0.25 16 4 N -0.41 -4.79 9.71 -9.61 -0.09 -4.89 16 5 C 0.03 0.35 6.75 -82.84 -0.56 -0.21 16 6 C 0.57 8.79 7.81 -12.19 -0.10 8.70 16 7 O -0.53 -9.53 16.35 5.35 0.09 -9.44 16 8 N -0.69 -10.64 5.14 -61.15 -0.31 -10.95 16 9 C 0.14 2.36 4.82 -4.04 -0.02 2.34 16 10 C 0.08 1.46 0.76 -90.46 -0.07 1.39 16 11 C -0.16 -2.82 7.92 37.16 0.29 -2.53 16 12 C 0.16 3.70 4.12 -3.53 -0.01 3.68 16 13 N -0.59 -14.29 2.57 -171.83 -0.44 -14.73 16 14 C -0.25 -6.69 9.65 -15.06 -0.15 -6.83 16 15 H 0.07 1.77 7.88 -52.48 -0.41 1.36 16 16 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 17 N -0.90 -25.52 11.14 55.49 0.62 -24.90 16 18 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.11 2.23 6.74 -3.54 -0.02 2.20 16 23 C 0.05 0.80 6.60 37.31 0.25 1.05 16 24 O -0.38 -7.13 9.98 -35.23 -0.35 -7.49 16 25 C 0.11 1.35 10.77 -17.00 -0.18 1.17 16 26 N -0.44 -4.82 10.41 -8.94 -0.09 -4.91 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.20 8.08 -51.93 -0.42 -0.22 16 30 H 0.18 0.88 8.06 -52.49 -0.42 0.45 16 31 H 0.41 6.03 6.55 -40.82 -0.27 5.76 16 32 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.40 6.12 -51.93 -0.32 1.08 16 36 H 0.04 0.66 6.86 -51.93 -0.36 0.30 16 37 H 0.10 2.47 6.13 -51.93 -0.32 2.15 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 41 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.05 0.81 6.26 -51.93 -0.32 0.49 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.18 1.98 7.65 -52.49 -0.40 1.58 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -31.63 359.94 -7.40 -39.03 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.17 Total: 5.35 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -1.04 Total: 11.36 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.32 Total: -60.39 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.26 Total: -16.93 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.63 -7.40 -39.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107712349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.085 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds