Wall clock time and date at job start Fri Apr 10 2020 18:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38780 * 119.90473 * 2 1 4 4 N 1.31767 * 120.12352 * 179.97438 * 3 2 1 5 5 C 1.33039 * 119.92233 * 0.02869 * 4 3 2 6 6 C 1.48147 * 120.09141 * 180.02562 * 5 4 3 7 7 O 1.21512 * 119.99979 * 179.97438 * 6 5 4 8 8 N 1.34785 * 120.00281 * 359.97438 * 6 5 4 9 9 C 1.46498 * 120.00193 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46943 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.55473 * 304.87446 * 10 9 8 12 12 C 1.53290 * 109.50941 * 184.74671 * 10 9 8 13 13 N 1.47170 * 108.41499 * 187.79524 * 12 10 9 14 14 C 1.36935 * 120.99701 * 230.54825 * 13 12 10 15 15 H 1.07992 * 120.00220 * 153.32579 * 14 13 12 16 16 C 1.38816 * 119.99598 * 333.33422 * 14 13 12 17 17 N 1.31616 * 120.00208 * 343.52376 * 16 14 13 18 18 Si 1.86797 * 119.99898 * 163.52863 * 16 14 13 19 19 H 1.48504 * 109.47120 * 89.99889 * 18 16 14 20 20 H 1.48504 * 109.47291 * 209.99333 * 18 16 14 21 21 H 1.48497 * 109.47353 * 329.99349 * 18 16 14 22 22 C 1.47156 * 118.02451 * 50.46879 * 13 12 10 23 23 C 1.53294 * 108.41770 * 309.53478 * 22 13 12 24 24 O 1.42961 * 109.22381 * 52.27835 * 23 22 13 25 25 C 1.39390 * 119.81238 * 0.26786 * 5 4 3 26 26 N 1.32105 * 119.90060 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47405 * 89.99316 * 1 2 3 28 28 H 1.08997 * 109.47374 * 209.99932 * 1 2 3 29 29 H 1.09010 * 109.46854 * 329.99677 * 1 2 3 30 30 H 1.07998 * 119.93614 * 359.97438 * 3 2 1 31 31 H 0.96997 * 119.99320 * 0.02562 * 8 6 5 32 32 H 1.09003 * 109.46963 * 60.00123 * 9 8 6 33 33 H 1.08999 * 109.47164 * 300.00130 * 9 8 6 34 34 H 1.09004 * 109.46863 * 180.13027 * 11 10 9 35 35 H 1.08999 * 109.47377 * 300.12547 * 11 10 9 36 36 H 1.08996 * 109.46812 * 60.13062 * 11 10 9 37 37 H 1.09000 * 109.68636 * 307.49976 * 12 10 9 38 38 H 1.09007 * 109.68606 * 68.05506 * 12 10 9 39 39 H 0.96998 * 120.00577 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.68193 * 189.78958 * 22 13 12 41 41 H 1.09002 * 109.67597 * 69.27168 * 22 13 12 42 42 H 1.08994 * 109.51442 * 172.20976 * 23 22 13 43 43 H 1.09006 * 109.50925 * 292.30722 * 23 22 13 44 44 H 1.08007 * 120.06617 * 179.70449 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2030 0.0000 4 7 3.5166 1.2081 0.0005 5 6 4.1846 0.0575 0.0004 6 6 5.6661 0.0588 0.0016 7 8 6.2746 -0.9930 0.0020 8 7 6.3391 1.2267 0.0022 9 6 7.8041 1.2279 0.0027 10 6 8.3128 2.6708 0.0040 11 6 7.7060 3.4288 -1.1785 12 6 9.8410 2.6749 -0.1150 13 7 10.3186 4.0537 0.0769 14 6 11.1808 4.6321 -0.8160 15 1 11.1948 5.7053 -0.9354 16 6 12.0366 3.8388 -1.5677 17 7 12.2612 2.5918 -1.2114 18 14 12.8697 4.5411 -3.0850 19 1 14.1701 5.1464 -2.7003 20 1 13.1018 3.4543 -4.0701 21 1 11.9996 5.5808 -3.6910 22 6 9.8406 4.7932 1.2560 23 6 8.3123 4.6858 1.3082 24 8 7.9340 3.3096 1.2256 25 6 3.4867 -1.1490 -0.0058 26 7 2.1656 -1.1452 0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6564 2.1368 -0.0004 31 1 5.8533 2.0662 0.0022 32 1 8.1682 0.7146 -0.8873 33 1 8.1675 0.7141 0.8927 34 1 8.0712 4.4558 -1.1776 35 1 7.9952 2.9412 -2.1095 36 1 6.6196 3.4293 -1.0908 37 1 10.2707 2.0284 0.6502 38 1 10.1334 2.3194 -1.1031 39 1 12.8595 2.0376 -1.7365 40 1 10.1325 5.8402 1.1758 41 1 10.2701 4.3604 2.1595 42 1 7.9495 5.1075 2.2455 43 1 7.8800 5.2339 0.4710 44 1 4.0249 -2.0854 -0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107712350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:04 Heat of formation + Delta-G solvation = -4.290395 kcal Electronic energy + Delta-G solvation = -27180.006682 eV Core-core repulsion = 23326.623184 eV Total energy + Delta-G solvation = -3853.383498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.56196 -39.64104 -38.68136 -35.18080 -34.83319 -34.33167 -33.17198 -31.71925 -31.25971 -28.95392 -27.94900 -26.52225 -25.67876 -24.88303 -23.67847 -23.22649 -21.43232 -20.65114 -18.90616 -18.29975 -17.91240 -16.96175 -16.27303 -15.94678 -15.75893 -15.52897 -15.18277 -15.02187 -14.59341 -14.35944 -14.06519 -13.86803 -13.50739 -13.27147 -13.13112 -13.01612 -12.86516 -12.73796 -12.46950 -11.98680 -11.94383 -11.58715 -11.50168 -11.19897 -11.02917 -10.83200 -10.67100 -10.41569 -10.31987 -10.26935 -9.98019 -9.57698 -9.56761 -9.40271 -9.04785 -8.88186 -8.54955 -6.74468 -5.85824 -3.29359 0.09290 0.71834 2.60500 3.02766 3.32911 3.40468 3.41732 3.52347 3.67263 3.75401 4.06387 4.24491 4.42462 4.45258 4.68567 4.85010 5.06885 5.12367 5.12946 5.21989 5.33091 5.46433 5.48793 5.51541 5.68040 5.91657 5.93270 5.94732 5.99108 6.06865 6.13333 6.28788 6.44295 6.53378 6.64415 6.75007 6.79567 6.82349 7.06098 7.28147 7.44996 7.61360 7.69742 7.87933 8.17732 8.32044 9.09617 9.72668 10.30123 11.22308 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022593 B = 0.002826 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.040767 B = 9906.618561 C =10278.794064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.096 3.904 3 C 0.051 3.949 4 N -0.407 5.407 5 C 0.027 3.973 6 C 0.569 3.431 7 O -0.533 6.533 8 N -0.693 5.693 9 C 0.136 3.864 10 C 0.078 3.922 11 C -0.163 4.163 12 C 0.160 3.840 13 N -0.590 5.590 14 C -0.254 4.254 15 H 0.068 0.932 16 C 0.004 3.996 17 N -0.902 5.902 18 Si 0.903 3.097 19 H -0.286 1.286 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.384 6.384 25 C 0.114 3.886 26 N -0.443 5.443 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.176 0.824 31 H 0.412 0.588 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.097 0.903 39 H 0.256 0.744 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.913 -1.910 2.222 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.046 4.046 3 C -0.112 4.112 4 N -0.124 5.124 5 C -0.114 4.114 6 C 0.352 3.648 7 O -0.410 6.410 8 N -0.344 5.344 9 C 0.013 3.987 10 C 0.037 3.963 11 C -0.220 4.220 12 C 0.033 3.967 13 N -0.314 5.314 14 C -0.383 4.383 15 H 0.085 0.915 16 C -0.195 4.195 17 N -0.546 5.546 18 Si 0.732 3.268 19 H -0.213 1.213 20 H -0.215 1.215 21 H -0.205 1.205 22 C -0.017 4.017 23 C -0.032 4.032 24 O -0.303 6.303 25 C -0.045 4.045 26 N -0.158 5.158 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.193 0.807 31 H 0.249 0.751 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -21.343 -2.860 2.284 21.655 hybrid contribution 0.480 0.942 -0.927 1.406 sum -20.863 -1.918 1.357 20.995 Atomic orbital electron populations 1.20758 0.87260 1.04312 1.03826 1.22677 0.98851 0.89792 0.93252 1.23696 0.90208 0.99457 0.97853 1.68366 1.09170 1.28734 1.06123 1.22274 0.96116 0.90922 1.02080 1.17617 0.84804 0.84625 0.77804 1.90810 1.68271 1.31239 1.50638 1.45907 1.08053 1.08576 1.71865 1.21475 0.77789 0.96150 1.03297 1.22546 0.98922 0.90206 0.84612 1.22214 0.98749 1.02764 0.98320 1.21294 0.85682 0.86747 1.02932 1.43988 1.52223 1.11857 1.23333 1.19139 1.12766 0.91811 1.14620 0.91462 1.25048 0.97205 0.96668 1.00593 1.70003 1.38114 1.07659 1.38784 0.86301 0.79464 0.78089 0.82939 1.21330 1.21462 1.20475 1.21603 0.92201 0.96890 0.91044 1.23035 0.97007 0.82765 1.00358 1.87828 1.80260 1.24293 1.37937 1.23842 0.89831 0.99454 0.91394 1.68486 1.08323 1.28977 1.10021 0.89525 0.89848 0.89827 0.80689 0.75055 0.89562 0.90381 0.90710 0.91860 0.93803 0.95173 0.88526 0.93411 0.92040 0.95641 0.90187 0.93360 0.79882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.19 36.01 0.37 -0.11 16 2 C 0.10 0.82 6.79 -82.27 -0.56 0.26 16 3 C 0.05 0.44 10.88 -17.38 -0.19 0.25 16 4 N -0.41 -4.79 9.71 -9.62 -0.09 -4.88 16 5 C 0.03 0.35 6.75 -82.85 -0.56 -0.21 16 6 C 0.57 8.79 7.81 -12.19 -0.10 8.70 16 7 O -0.53 -9.52 16.35 5.36 0.09 -9.43 16 8 N -0.69 -10.65 5.19 -61.15 -0.32 -10.97 16 9 C 0.14 2.35 4.85 -4.04 -0.02 2.33 16 10 C 0.08 1.46 0.78 -90.47 -0.07 1.39 16 11 C -0.16 -2.82 7.86 37.16 0.29 -2.53 16 12 C 0.16 3.71 4.11 -3.53 -0.01 3.69 16 13 N -0.59 -14.31 2.57 -171.81 -0.44 -14.75 16 14 C -0.25 -6.72 9.65 -15.06 -0.15 -6.86 16 15 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 16 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 17 N -0.90 -25.53 11.14 55.49 0.62 -24.91 16 18 Si 0.90 21.17 29.58 -169.99 -5.03 16.14 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.11 2.23 6.73 -3.53 -0.02 2.21 16 23 C 0.05 0.80 6.60 37.31 0.25 1.05 16 24 O -0.38 -7.17 10.17 -35.23 -0.36 -7.53 16 25 C 0.11 1.35 10.77 -17.00 -0.18 1.17 16 26 N -0.44 -4.81 10.41 -8.94 -0.09 -4.91 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.20 8.09 -51.92 -0.42 -0.22 16 30 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.41 6.00 6.35 -40.82 -0.26 5.74 16 32 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.07 1.41 6.12 -51.93 -0.32 1.09 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.04 0.65 6.59 -51.93 -0.34 0.31 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 2.46 6.16 -51.93 -0.32 2.14 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 0.81 6.26 -51.93 -0.32 0.49 16 44 H 0.18 1.98 7.65 -52.48 -0.40 1.58 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -31.65 359.73 -7.40 -39.05 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.15 Total: 5.41 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -1.04 Total: 11.35 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.33 Total: -60.42 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.27 Total: -16.96 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.65 -7.40 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107712350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.759 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds