Wall clock time and date at job start Fri Apr 10 2020 18:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38780 * 119.90473 * 2 1 4 4 N 1.31767 * 120.12352 * 179.97438 * 3 2 1 5 5 C 1.33039 * 119.92233 * 0.02869 * 4 3 2 6 6 C 1.48147 * 120.09141 * 180.02562 * 5 4 3 7 7 O 1.21512 * 119.99979 * 179.97438 * 6 5 4 8 8 N 1.34785 * 120.00281 * 359.97438 * 6 5 4 9 9 C 1.46498 * 120.00193 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46943 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.55473 * 304.87446 * 10 9 8 12 12 C 1.53290 * 109.50941 * 184.74671 * 10 9 8 13 13 N 1.47170 * 108.41499 * 187.79524 * 12 10 9 14 14 C 1.36935 * 120.99701 * 230.54825 * 13 12 10 15 15 H 1.07992 * 120.00220 * 153.32579 * 14 13 12 16 16 C 1.38816 * 119.99598 * 333.33422 * 14 13 12 17 17 N 1.31616 * 120.00208 * 343.52376 * 16 14 13 18 18 Si 1.86797 * 119.99898 * 163.52863 * 16 14 13 19 19 H 1.48504 * 109.47120 * 89.99889 * 18 16 14 20 20 H 1.48504 * 109.47291 * 209.99333 * 18 16 14 21 21 H 1.48497 * 109.47353 * 329.99349 * 18 16 14 22 22 C 1.47156 * 118.02451 * 50.46879 * 13 12 10 23 23 C 1.53294 * 108.41770 * 309.53478 * 22 13 12 24 24 O 1.42961 * 109.22381 * 52.27835 * 23 22 13 25 25 C 1.39390 * 119.81238 * 0.26786 * 5 4 3 26 26 N 1.32105 * 119.90060 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47405 * 89.99316 * 1 2 3 28 28 H 1.08997 * 109.47374 * 209.99932 * 1 2 3 29 29 H 1.09010 * 109.46854 * 329.99677 * 1 2 3 30 30 H 1.07998 * 119.93614 * 359.97438 * 3 2 1 31 31 H 0.96997 * 119.99320 * 0.02562 * 8 6 5 32 32 H 1.09003 * 109.46963 * 60.00123 * 9 8 6 33 33 H 1.08999 * 109.47164 * 300.00130 * 9 8 6 34 34 H 1.09004 * 109.46863 * 180.13027 * 11 10 9 35 35 H 1.08999 * 109.47377 * 300.12547 * 11 10 9 36 36 H 1.08996 * 109.46812 * 60.13062 * 11 10 9 37 37 H 1.09000 * 109.68636 * 307.49976 * 12 10 9 38 38 H 1.09007 * 109.68606 * 68.05506 * 12 10 9 39 39 H 0.96998 * 120.00577 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.68193 * 189.78958 * 22 13 12 41 41 H 1.09002 * 109.67597 * 69.27168 * 22 13 12 42 42 H 1.08994 * 109.51442 * 172.20976 * 23 22 13 43 43 H 1.09006 * 109.50925 * 292.30722 * 23 22 13 44 44 H 1.08007 * 120.06617 * 179.70449 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2030 0.0000 4 7 3.5166 1.2081 0.0005 5 6 4.1846 0.0575 0.0004 6 6 5.6661 0.0588 0.0016 7 8 6.2746 -0.9930 0.0020 8 7 6.3391 1.2267 0.0022 9 6 7.8041 1.2279 0.0027 10 6 8.3128 2.6708 0.0040 11 6 7.7060 3.4288 -1.1785 12 6 9.8410 2.6749 -0.1150 13 7 10.3186 4.0537 0.0769 14 6 11.1808 4.6321 -0.8160 15 1 11.1948 5.7053 -0.9354 16 6 12.0366 3.8388 -1.5677 17 7 12.2612 2.5918 -1.2114 18 14 12.8697 4.5411 -3.0850 19 1 14.1701 5.1464 -2.7003 20 1 13.1018 3.4543 -4.0701 21 1 11.9996 5.5808 -3.6910 22 6 9.8406 4.7932 1.2560 23 6 8.3123 4.6858 1.3082 24 8 7.9340 3.3096 1.2256 25 6 3.4867 -1.1490 -0.0058 26 7 2.1656 -1.1452 0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6564 2.1368 -0.0004 31 1 5.8533 2.0662 0.0022 32 1 8.1682 0.7146 -0.8873 33 1 8.1675 0.7141 0.8927 34 1 8.0712 4.4558 -1.1776 35 1 7.9952 2.9412 -2.1095 36 1 6.6196 3.4293 -1.0908 37 1 10.2707 2.0284 0.6502 38 1 10.1334 2.3194 -1.1031 39 1 12.8595 2.0376 -1.7365 40 1 10.1325 5.8402 1.1758 41 1 10.2701 4.3604 2.1595 42 1 7.9495 5.1075 2.2455 43 1 7.8800 5.2339 0.4710 44 1 4.0249 -2.0854 -0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107712350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:03 Heat of formation + Delta-G solvation = -27.494802 kcal Electronic energy + Delta-G solvation = -27181.012901 eV Core-core repulsion = 23326.623184 eV Total energy + Delta-G solvation = -3854.389717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.40032 -41.02274 -40.07270 -36.62006 -36.07772 -35.67055 -33.89209 -33.25093 -33.09539 -29.76954 -29.53234 -28.06989 -27.25285 -25.65969 -25.01027 -24.54942 -22.95622 -21.89118 -20.41699 -19.44541 -19.02119 -18.64961 -17.44855 -17.12093 -16.90884 -16.73300 -16.58891 -16.26947 -15.96678 -15.66319 -15.55927 -15.26591 -15.12325 -14.68584 -14.46228 -14.06721 -13.75396 -13.64571 -13.42855 -13.22237 -13.18914 -12.93606 -12.78606 -12.77596 -12.54930 -12.42281 -12.28734 -12.17343 -11.96125 -11.86537 -11.59710 -11.12503 -10.76954 -10.50106 -10.42103 -10.24079 -10.12921 -8.70896 -7.89409 -5.36312 -0.74191 -0.05437 1.45820 1.47941 1.55306 1.57010 1.86539 2.48086 2.63465 2.76944 2.87436 3.01214 3.25305 3.30101 3.49080 3.70388 3.90773 3.92998 3.99657 4.08230 4.09506 4.41376 4.45669 4.46309 4.53587 4.60396 4.70339 4.76460 4.79192 4.85815 4.95210 5.04045 5.05418 5.10636 5.20346 5.23984 5.34112 5.35926 5.53262 5.61986 6.00052 6.29684 6.32035 6.36911 6.60337 6.97758 7.07386 7.76380 8.30833 9.16516 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022593 B = 0.002826 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.040767 B = 9906.618561 C =10278.794064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.107 3.893 3 C 0.058 3.942 4 N -0.421 5.421 5 C 0.002 3.998 6 C 0.570 3.430 7 O -0.566 6.566 8 N -0.686 5.686 9 C 0.145 3.855 10 C 0.094 3.906 11 C -0.153 4.153 12 C 0.168 3.832 13 N -0.607 5.607 14 C -0.259 4.259 15 H 0.074 0.926 16 C -0.050 4.050 17 N -0.936 5.936 18 Si 0.966 3.034 19 H -0.286 1.286 20 H -0.295 1.295 21 H -0.267 1.267 22 C 0.102 3.898 23 C 0.052 3.948 24 O -0.387 6.387 25 C 0.110 3.890 26 N -0.461 5.461 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.219 0.781 31 H 0.418 0.582 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.072 0.928 37 H -0.005 1.005 38 H 0.068 0.932 39 H 0.250 0.750 40 H 0.073 0.927 41 H 0.013 0.987 42 H 0.117 0.883 43 H 0.060 0.940 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.426 0.080 2.045 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.036 4.036 3 C -0.107 4.107 4 N -0.138 5.138 5 C -0.136 4.136 6 C 0.355 3.645 7 O -0.445 6.445 8 N -0.338 5.338 9 C 0.021 3.979 10 C 0.052 3.948 11 C -0.210 4.210 12 C 0.042 3.958 13 N -0.331 5.331 14 C -0.389 4.389 15 H 0.091 0.909 16 C -0.245 4.245 17 N -0.582 5.582 18 Si 0.794 3.206 19 H -0.213 1.213 20 H -0.221 1.221 21 H -0.192 1.192 22 C -0.023 4.023 23 C -0.025 4.025 24 O -0.306 6.306 25 C -0.048 4.048 26 N -0.176 5.176 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.132 0.868 30 H 0.235 0.765 31 H 0.257 0.743 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.013 0.987 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.031 0.969 42 H 0.135 0.865 43 H 0.079 0.921 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -24.862 -0.851 2.125 24.968 hybrid contribution 1.422 0.376 -0.788 1.669 sum -23.440 -0.475 1.337 23.483 Atomic orbital electron populations 1.20952 0.84055 1.05785 1.05193 1.23450 1.00789 0.89080 0.90273 1.24441 0.89132 1.01230 0.95877 1.68317 1.10779 1.28075 1.06653 1.21774 0.94435 0.92015 1.05373 1.17991 0.86090 0.83872 0.76596 1.90782 1.69409 1.32255 1.52057 1.45719 1.06868 1.09067 1.72107 1.21178 0.79306 0.95051 1.02356 1.22194 0.95654 0.91280 0.85633 1.22104 1.00360 1.01478 0.97092 1.21050 0.88809 0.85935 1.00048 1.44239 1.52270 1.12145 1.24433 1.19489 1.12483 0.92196 1.14692 0.90877 1.25798 0.98370 0.97033 1.03310 1.70171 1.39180 1.08968 1.39886 0.85299 0.78450 0.77327 0.79513 1.21302 1.22110 1.19150 1.21815 0.94593 0.96876 0.89030 1.23113 0.94353 0.82209 1.02822 1.87839 1.79831 1.25228 1.37741 1.23806 0.90467 0.99081 0.91484 1.68572 1.07664 1.30403 1.11004 0.87888 0.89990 0.86773 0.76485 0.74306 0.90252 0.91847 0.91774 0.92443 0.90882 0.98695 0.91331 0.94037 0.90882 0.96923 0.86531 0.92145 0.80172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 10.19 71.24 0.73 0.22 16 2 C 0.11 1.49 6.79 42.65 0.29 1.78 16 3 C 0.06 0.79 10.88 84.83 0.92 1.72 16 4 N -0.42 -9.03 9.71 -184.33 -1.79 -10.82 16 5 C 0.00 0.06 6.75 41.87 0.28 0.34 16 6 C 0.57 17.93 7.81 86.87 0.68 18.60 16 7 O -0.57 -21.11 16.35 -3.75 -0.06 -21.17 16 8 N -0.69 -21.03 5.19 -465.68 -2.41 -23.44 16 9 C 0.15 5.19 4.85 86.38 0.42 5.61 16 10 C 0.09 3.52 0.78 -10.70 -0.01 3.51 16 11 C -0.15 -5.13 7.86 71.98 0.57 -4.57 16 12 C 0.17 8.12 4.11 86.35 0.35 8.47 16 13 N -0.61 -29.83 2.57 -697.49 -1.79 -31.62 16 14 C -0.26 -13.79 9.65 84.03 0.81 -12.98 16 15 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 16 C -0.05 -2.73 4.95 84.86 0.42 -2.31 16 17 N -0.94 -55.08 11.14 21.65 0.24 -54.84 16 18 Si 0.97 44.11 29.58 68.60 2.03 46.14 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 C 0.10 4.12 6.73 86.35 0.58 4.71 16 23 C 0.05 1.70 6.60 72.08 0.48 2.17 16 24 O -0.39 -14.01 10.17 -148.98 -1.52 -15.53 16 25 C 0.11 2.58 10.77 84.93 0.91 3.49 16 26 N -0.46 -9.35 10.41 -182.21 -1.90 -11.24 16 27 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.11 -0.07 8.09 -2.38 -0.02 -0.09 16 30 H 0.22 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.42 11.60 6.35 -92.71 -0.59 11.02 16 32 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 2.31 6.12 -2.39 -0.01 2.29 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.02 6.59 -2.39 -0.02 2.00 16 37 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.07 3.68 6.16 -2.38 -0.01 3.67 16 39 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 40 H 0.07 2.74 7.96 -2.39 -0.02 2.72 16 41 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.06 1.85 6.26 -2.38 -0.01 1.84 16 44 H 0.18 4.10 7.65 -2.91 -0.02 4.08 16 Total: -1.00 -71.40 359.73 0.67 -70.73 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.44 Total: 21.03 kcal Atomic # 6 Polarization: 23.33 SS G_CDS: 7.43 Total: 30.77 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -7.65 Total: -131.96 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -1.58 Total: -36.70 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -71.40 0.67 -70.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107712350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.231 kcal (2) G-P(sol) polarization free energy of solvation -71.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds