Wall clock time and date at job start Fri Apr 10 2020 18:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 C 1.53000 * 109.47158 * 120.00005 * 2 1 3 5 5 C 1.52998 * 109.47146 * 87.37427 * 4 2 1 6 6 H 1.08997 * 109.70676 * 60.97294 * 5 4 2 7 7 C 1.53300 * 109.68073 * 300.43432 * 5 4 2 8 8 O 1.42960 * 109.21923 * 187.97445 * 7 5 4 9 9 C 1.42957 * 114.16948 * 62.58569 * 8 7 5 10 10 C 1.53298 * 109.22206 * 297.41994 * 9 8 7 11 11 N 1.47145 * 108.38543 * 52.29770 * 10 9 8 12 12 S 1.65599 * 120.98281 * 129.48852 * 11 10 9 13 13 O 1.42106 * 106.40142 * 18.23955 * 12 11 10 14 14 O 1.42100 * 106.40692 * 151.15829 * 12 11 10 15 15 N 1.65598 * 107.21953 * 264.70240 * 12 11 10 16 16 C 1.46497 * 119.99944 * 269.99555 * 15 12 11 17 17 C 1.46499 * 120.00054 * 89.99940 * 15 12 11 18 18 C 1.50696 * 109.47201 * 95.00121 * 17 15 12 19 19 H 1.07995 * 120.00493 * 359.97438 * 18 17 15 20 20 C 1.37881 * 119.99828 * 180.02562 * 18 17 15 21 21 N 1.31515 * 119.99902 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99956 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47087 * 89.99743 * 22 20 18 24 24 H 1.48498 * 109.46855 * 209.99728 * 22 20 18 25 25 H 1.48504 * 109.46997 * 329.99671 * 22 20 18 26 26 H 1.09000 * 109.47056 * 164.84444 * 1 2 3 27 27 H 1.09001 * 109.47086 * 284.84645 * 1 2 3 28 28 H 1.09003 * 109.46979 * 44.84686 * 1 2 3 29 29 H 1.09000 * 109.47002 * 240.00364 * 2 1 3 30 30 H 1.08996 * 109.47518 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47175 * 299.99913 * 3 2 1 32 32 H 1.08997 * 109.47460 * 59.99826 * 3 2 1 33 33 H 1.09000 * 109.46796 * 327.37503 * 4 2 1 34 34 H 1.08992 * 109.47025 * 207.37693 * 4 2 1 35 35 H 1.08997 * 109.51557 * 307.90017 * 7 5 4 36 36 H 1.09004 * 109.50774 * 68.05237 * 7 5 4 37 37 H 1.08999 * 109.51787 * 177.49434 * 9 8 7 38 38 H 1.08998 * 109.55177 * 57.36321 * 9 8 7 39 39 H 1.09009 * 109.67817 * 292.57643 * 10 9 8 40 40 H 1.08999 * 109.71000 * 172.04553 * 10 9 8 41 41 H 1.09008 * 109.46815 * 90.00077 * 16 15 12 42 42 H 1.08998 * 109.47411 * 209.99804 * 16 15 12 43 43 H 1.09004 * 109.47553 * 330.00502 * 16 15 12 44 44 H 1.08997 * 109.46942 * 215.00321 * 17 15 12 45 45 H 1.08998 * 109.46936 * 334.99623 * 17 15 12 46 46 H 0.97003 * 119.99429 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.1477 -2.2206 0.9642 6 1 2.8550 -2.3905 0.1525 7 6 0.7716 -2.7721 0.5741 8 8 0.8420 -4.1976 0.4916 9 6 1.1664 -4.8401 1.7267 10 6 2.5627 -4.3944 2.1760 11 7 2.6034 -2.9235 2.1741 12 16 3.1465 -2.0840 3.4941 13 8 3.8882 -3.0073 4.2795 14 8 3.6932 -0.8690 3.0000 15 7 1.8181 -1.6683 4.3913 16 6 1.1315 -0.3991 4.1387 17 6 1.3295 -2.5698 5.4376 18 6 1.9090 -2.1579 6.7663 19 1 2.5749 -1.3098 6.8255 20 6 1.5898 -2.8646 7.9064 21 7 0.7792 -3.8978 7.8343 22 14 2.3075 -2.3536 9.5537 23 1 1.4014 -1.3746 10.2061 24 1 2.4526 -3.5491 10.4225 25 1 3.6390 -1.7310 9.3418 26 1 -0.3633 -0.9919 -0.2687 27 1 -0.3633 0.2633 0.9934 28 1 -0.3633 0.7286 -0.7247 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.3451 -0.5569 2.0727 34 1 3.0214 -0.3312 1.5187 35 1 0.0379 -2.4869 1.3280 36 1 0.4774 -2.3654 -0.3935 37 1 1.1563 -5.9212 1.5885 38 1 0.4343 -4.5631 2.4852 39 1 3.3118 -4.7833 1.4862 40 1 2.7614 -4.7659 3.1813 41 1 0.3528 -0.5498 3.3908 42 1 0.6818 -0.0388 5.0639 43 1 1.8489 0.3357 3.7731 44 1 0.2418 -2.5173 5.4836 45 1 1.6346 -3.5909 5.2090 46 1 0.5544 -4.3946 8.6365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072995729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:06 Heat of formation + Delta-G solvation = -103.696156 kcal Electronic energy + Delta-G solvation = -28203.540804 eV Core-core repulsion = 24448.997948 eV Total energy + Delta-G solvation = -3754.542856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.63064 -37.38805 -36.23595 -35.53502 -35.23582 -34.51801 -32.48943 -31.45644 -28.00372 -27.60084 -27.39778 -25.89791 -25.13250 -23.07177 -22.32749 -21.22487 -20.22892 -18.42423 -17.61276 -16.65593 -16.53237 -16.35060 -15.82771 -15.35812 -15.07728 -14.92116 -14.71195 -14.42937 -14.24907 -13.67812 -13.58740 -13.38478 -13.10014 -12.66251 -12.43622 -12.25628 -12.16477 -12.14320 -11.82570 -11.60596 -11.50666 -11.33316 -11.27738 -11.12910 -11.09804 -10.77476 -10.73834 -10.63868 -10.52295 -10.34602 -10.24589 -10.06475 -9.80275 -9.65905 -8.66330 -8.47955 -8.10854 -6.10419 -4.14505 1.11863 3.28920 3.32364 3.35619 3.41704 3.84576 3.97056 4.41507 4.60288 4.71800 4.82667 4.88694 4.96099 5.05878 5.14356 5.22924 5.25004 5.27504 5.39679 5.54223 5.57033 5.59479 5.62166 5.65742 5.68586 5.78446 5.85815 5.88561 5.94495 6.01754 6.07319 6.13708 6.22736 6.25923 6.36800 6.49259 6.66824 6.72883 7.14474 7.16961 7.34509 7.54796 7.87053 8.15748 8.87832 9.51045 10.98136 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016280 B = 0.005025 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.536709 B = 5571.331396 C = 6206.057371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.203 4.203 5 C 0.130 3.870 6 H 0.079 0.921 7 C 0.048 3.952 8 O -0.383 6.383 9 C 0.047 3.953 10 C 0.088 3.912 11 N -1.011 6.011 12 S 2.780 3.220 13 O -0.963 6.963 14 O -0.988 6.988 15 N -0.995 5.995 16 C 0.092 3.908 17 C 0.259 3.741 18 C -0.529 4.529 19 H 0.060 0.940 20 C 0.063 3.937 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.284 1.284 25 H -0.272 1.272 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.142 0.858 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.034 0.966 45 H 0.035 0.965 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 4.115 -16.626 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.106 4.106 3 C -0.202 4.202 4 C -0.241 4.241 5 C 0.024 3.976 6 H 0.097 0.903 7 C -0.029 4.029 8 O -0.301 6.301 9 C -0.031 4.031 10 C -0.038 4.038 11 N -0.850 5.850 12 S 2.790 3.210 13 O -0.946 6.946 14 O -0.972 6.972 15 N -0.837 5.837 16 C -0.054 4.054 17 C 0.137 3.863 18 C -0.569 4.569 19 H 0.078 0.922 20 C -0.139 4.139 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.021 4.052 -16.446 16.969 hybrid contribution -0.122 0.148 1.184 1.200 sum -1.143 4.200 -15.262 15.870 Atomic orbital electron populations 1.22247 0.95496 1.01946 1.02166 1.20992 0.95472 0.96468 0.97653 1.21842 1.01266 0.95611 1.01495 1.23590 1.08094 0.92784 0.99599 1.21615 0.96344 0.91963 0.87697 0.90325 1.23373 0.95970 0.81214 1.02389 1.87909 1.90835 1.18986 1.32377 1.22969 0.95393 0.97865 0.86855 1.22055 0.98172 0.79577 1.03982 1.58644 1.82065 1.14767 1.29543 1.02069 0.73999 0.73051 0.71839 1.93608 1.68790 1.64442 1.67795 1.93380 1.78010 1.46017 1.79841 1.57666 1.49636 1.28044 1.48364 1.21501 0.96764 0.85567 1.01611 1.19030 0.95591 0.87554 0.84157 1.21476 1.28739 1.14559 0.92092 0.92193 1.24926 0.94987 0.94742 0.99293 1.69915 1.35180 1.19008 1.29347 0.86513 0.79695 0.78121 0.83249 1.20587 1.21009 1.19693 0.92062 0.92326 0.92766 0.91194 0.92419 0.93036 0.92447 0.89809 0.84081 0.92461 0.87688 0.87910 0.92112 0.90840 0.87847 0.94033 0.90306 0.91236 0.94806 0.94709 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.67 37.16 0.32 -1.11 16 2 C -0.09 -0.86 2.50 -90.62 -0.23 -1.09 16 3 C -0.14 -1.39 8.99 37.16 0.33 -1.06 16 4 C -0.20 -2.60 3.01 -26.73 -0.08 -2.68 16 5 C 0.13 1.72 3.04 -67.42 -0.21 1.52 16 6 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 7 C 0.05 0.58 4.68 37.31 0.17 0.76 16 8 O -0.38 -5.16 10.74 -35.23 -0.38 -5.54 16 9 C 0.05 0.62 6.99 37.31 0.26 0.88 16 10 C 0.09 1.28 6.59 -3.54 -0.02 1.26 16 11 N -1.01 -16.01 3.40 -106.03 -0.36 -16.37 16 12 S 2.78 54.85 5.61 -107.50 -0.60 54.25 16 13 O -0.96 -22.94 15.75 -57.17 -0.90 -23.84 16 14 O -0.99 -19.34 12.47 -57.17 -0.71 -20.05 16 15 N -0.99 -20.15 3.23 -123.06 -0.40 -20.55 16 16 C 0.09 1.52 8.81 59.85 0.53 2.05 16 17 C 0.26 6.34 5.08 -5.20 -0.03 6.32 16 18 C -0.53 -14.67 9.38 -34.44 -0.32 -14.99 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.90 -25.71 13.29 55.43 0.74 -24.98 16 22 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H 0.06 0.51 5.04 -51.93 -0.26 0.25 16 27 H 0.06 0.54 7.73 -51.93 -0.40 0.14 16 28 H 0.05 0.42 8.05 -51.93 -0.42 0.00 16 29 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 30 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.11 2.94 -51.93 -0.15 0.95 16 34 H 0.14 2.14 4.73 -53.65 -0.25 1.88 16 35 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 36 H 0.11 1.04 5.70 -51.93 -0.30 0.74 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 40 H 0.10 1.65 7.10 -51.93 -0.37 1.28 16 41 H 0.04 0.58 6.71 -51.92 -0.35 0.23 16 42 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 43 H 0.07 1.08 6.59 -51.93 -0.34 0.73 16 44 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 45 H 0.04 0.90 7.61 -51.93 -0.40 0.51 16 46 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 355.93 15.07 5.36 5.36 Total: -1.00 -32.12 355.93 -9.04 -41.16 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.41 Total: 0.42 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 0.64 Total: -6.50 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -0.02 Total: -61.90 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -1.99 Total: -49.43 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 54.85 SS G_CDS: -0.60 Total: 54.25 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.12 -9.04 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072995729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.532 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds