Wall clock time and date at job start Fri Apr 10 2020 18:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 C 1.53000 * 109.47158 * 120.00005 * 2 1 3 5 5 C 1.52998 * 109.47146 * 87.37427 * 4 2 1 6 6 H 1.08997 * 109.70676 * 60.97294 * 5 4 2 7 7 C 1.53300 * 109.68073 * 300.43432 * 5 4 2 8 8 O 1.42960 * 109.21923 * 187.97445 * 7 5 4 9 9 C 1.42957 * 114.16948 * 62.58569 * 8 7 5 10 10 C 1.53298 * 109.22206 * 297.41994 * 9 8 7 11 11 N 1.47145 * 108.38543 * 52.29770 * 10 9 8 12 12 S 1.65599 * 120.98281 * 129.48852 * 11 10 9 13 13 O 1.42106 * 106.40142 * 18.23955 * 12 11 10 14 14 O 1.42100 * 106.40692 * 151.15829 * 12 11 10 15 15 N 1.65598 * 107.21953 * 264.70240 * 12 11 10 16 16 C 1.46497 * 119.99944 * 269.99555 * 15 12 11 17 17 C 1.46499 * 120.00054 * 89.99940 * 15 12 11 18 18 C 1.50696 * 109.47201 * 95.00121 * 17 15 12 19 19 H 1.07995 * 120.00493 * 359.97438 * 18 17 15 20 20 C 1.37881 * 119.99828 * 180.02562 * 18 17 15 21 21 N 1.31515 * 119.99902 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99956 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47087 * 89.99743 * 22 20 18 24 24 H 1.48498 * 109.46855 * 209.99728 * 22 20 18 25 25 H 1.48504 * 109.46997 * 329.99671 * 22 20 18 26 26 H 1.09000 * 109.47056 * 164.84444 * 1 2 3 27 27 H 1.09001 * 109.47086 * 284.84645 * 1 2 3 28 28 H 1.09003 * 109.46979 * 44.84686 * 1 2 3 29 29 H 1.09000 * 109.47002 * 240.00364 * 2 1 3 30 30 H 1.08996 * 109.47518 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47175 * 299.99913 * 3 2 1 32 32 H 1.08997 * 109.47460 * 59.99826 * 3 2 1 33 33 H 1.09000 * 109.46796 * 327.37503 * 4 2 1 34 34 H 1.08992 * 109.47025 * 207.37693 * 4 2 1 35 35 H 1.08997 * 109.51557 * 307.90017 * 7 5 4 36 36 H 1.09004 * 109.50774 * 68.05237 * 7 5 4 37 37 H 1.08999 * 109.51787 * 177.49434 * 9 8 7 38 38 H 1.08998 * 109.55177 * 57.36321 * 9 8 7 39 39 H 1.09009 * 109.67817 * 292.57643 * 10 9 8 40 40 H 1.08999 * 109.71000 * 172.04553 * 10 9 8 41 41 H 1.09008 * 109.46815 * 90.00077 * 16 15 12 42 42 H 1.08998 * 109.47411 * 209.99804 * 16 15 12 43 43 H 1.09004 * 109.47553 * 330.00502 * 16 15 12 44 44 H 1.08997 * 109.46942 * 215.00321 * 17 15 12 45 45 H 1.08998 * 109.46936 * 334.99623 * 17 15 12 46 46 H 0.97003 * 119.99429 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.1477 -2.2206 0.9642 6 1 2.8550 -2.3905 0.1525 7 6 0.7716 -2.7721 0.5741 8 8 0.8420 -4.1976 0.4916 9 6 1.1664 -4.8401 1.7267 10 6 2.5627 -4.3944 2.1760 11 7 2.6034 -2.9235 2.1741 12 16 3.1465 -2.0840 3.4941 13 8 3.8882 -3.0073 4.2795 14 8 3.6932 -0.8690 3.0000 15 7 1.8181 -1.6683 4.3913 16 6 1.1315 -0.3991 4.1387 17 6 1.3295 -2.5698 5.4376 18 6 1.9090 -2.1579 6.7663 19 1 2.5749 -1.3098 6.8255 20 6 1.5898 -2.8646 7.9064 21 7 0.7792 -3.8978 7.8343 22 14 2.3075 -2.3536 9.5537 23 1 1.4014 -1.3746 10.2061 24 1 2.4526 -3.5491 10.4225 25 1 3.6390 -1.7310 9.3418 26 1 -0.3633 -0.9919 -0.2687 27 1 -0.3633 0.2633 0.9934 28 1 -0.3633 0.7286 -0.7247 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.3451 -0.5569 2.0727 34 1 3.0214 -0.3312 1.5187 35 1 0.0379 -2.4869 1.3280 36 1 0.4774 -2.3654 -0.3935 37 1 1.1563 -5.9212 1.5885 38 1 0.4343 -4.5631 2.4852 39 1 3.3118 -4.7833 1.4862 40 1 2.7614 -4.7659 3.1813 41 1 0.3528 -0.5498 3.3908 42 1 0.6818 -0.0388 5.0639 43 1 1.8489 0.3357 3.7731 44 1 0.2418 -2.5173 5.4836 45 1 1.6346 -3.5909 5.2090 46 1 0.5544 -4.3946 8.6365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072995729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:05 Heat of formation + Delta-G solvation = -126.503172 kcal Electronic energy + Delta-G solvation = -28204.529790 eV Core-core repulsion = 24448.997948 eV Total energy + Delta-G solvation = -3755.531842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.69686 -38.77324 -37.53430 -37.11221 -36.87574 -35.65155 -34.54224 -32.46629 -29.79938 -28.63339 -28.31090 -26.98657 -26.71067 -24.31517 -24.03842 -22.39904 -21.08874 -19.86401 -19.10252 -18.54690 -18.03343 -17.64214 -17.15227 -16.67538 -16.47561 -16.03206 -15.91050 -15.83635 -15.38979 -15.12950 -15.03357 -14.51365 -14.25035 -13.99962 -13.93088 -13.64426 -13.51008 -13.23814 -13.12139 -13.04113 -12.98254 -12.93638 -12.77289 -12.50789 -12.43826 -12.30293 -12.08387 -11.94133 -11.79700 -11.56966 -11.48451 -11.36648 -11.28277 -10.86035 -10.60907 -9.83532 -9.80342 -8.22821 -6.34687 -0.41838 1.37264 1.39625 1.50016 1.90527 2.36580 2.48470 2.85796 3.08116 3.30944 3.51264 3.76010 3.93558 3.99083 4.04144 4.13448 4.18480 4.26505 4.29449 4.37894 4.55830 4.57749 4.62567 4.68110 4.75634 4.83513 4.85361 4.91779 4.97034 5.04849 5.08537 5.11732 5.14944 5.18143 5.28492 5.37602 5.47823 5.55161 5.59145 5.64924 5.67966 5.91798 6.07710 6.13080 6.73018 7.34331 8.84640 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016280 B = 0.005025 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.536709 B = 5571.331396 C = 6206.057371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.082 4.082 3 C -0.146 4.146 4 C -0.201 4.201 5 C 0.125 3.875 6 H 0.092 0.908 7 C 0.050 3.950 8 O -0.386 6.386 9 C 0.052 3.948 10 C 0.081 3.919 11 N -1.006 6.006 12 S 2.789 3.211 13 O -1.011 7.011 14 O -0.991 6.991 15 N -1.001 6.001 16 C 0.087 3.913 17 C 0.276 3.724 18 C -0.550 4.550 19 H 0.050 0.950 20 C 0.015 3.985 21 N -0.922 5.922 22 Si 0.955 3.045 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.276 1.276 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.054 0.946 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.048 0.952 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.027 0.973 45 H 0.014 0.986 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 4.731 -18.245 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.101 4.101 3 C -0.204 4.204 4 C -0.240 4.240 5 C 0.020 3.980 6 H 0.110 0.890 7 C -0.028 4.028 8 O -0.304 6.304 9 C -0.026 4.026 10 C -0.044 4.044 11 N -0.848 5.848 12 S 2.800 3.200 13 O -0.995 6.995 14 O -0.975 6.975 15 N -0.842 5.842 16 C -0.058 4.058 17 C 0.152 3.848 18 C -0.590 4.590 19 H 0.068 0.932 20 C -0.185 4.185 21 N -0.561 5.561 22 Si 0.779 3.221 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.201 1.201 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.072 0.928 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.045 0.955 45 H 0.032 0.968 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.801 4.697 -18.072 18.760 hybrid contribution 0.133 -0.016 1.578 1.584 sum -1.668 4.681 -16.494 17.226 Atomic orbital electron populations 1.22232 0.94344 1.02823 1.02338 1.20988 0.96356 0.96290 0.96502 1.21858 1.00746 0.95619 1.02131 1.23511 1.06696 0.92713 1.01066 1.21918 0.97482 0.92039 0.86568 0.89040 1.23512 0.94838 0.80634 1.03816 1.87913 1.90656 1.19650 1.32218 1.22987 0.93741 0.99346 0.86557 1.22230 1.00042 0.78670 1.03455 1.58353 1.81963 1.15353 1.29137 1.01602 0.73708 0.72651 0.72025 1.93539 1.70379 1.65818 1.69731 1.93417 1.78237 1.46121 1.79692 1.57553 1.49817 1.28819 1.48029 1.21711 0.97619 0.84226 1.02226 1.18565 0.94752 0.87287 0.84210 1.21802 1.28819 1.14456 0.93884 0.93195 1.25711 0.95335 0.94777 1.02675 1.69998 1.35997 1.19734 1.30403 0.85609 0.78889 0.78222 0.79337 1.18984 1.20253 1.20077 0.91369 0.92934 0.91317 0.89802 0.93318 0.91201 0.93044 0.90406 0.86392 0.92799 0.84840 0.85315 0.93404 0.88816 0.89951 0.90974 0.91032 0.90233 0.95522 0.96790 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 8.67 71.98 0.62 -1.71 16 2 C -0.08 -1.42 2.50 -10.79 -0.03 -1.45 16 3 C -0.15 -2.51 8.99 71.98 0.65 -1.86 16 4 C -0.20 -4.86 3.01 30.59 0.09 -4.77 16 5 C 0.13 3.08 3.04 44.97 0.14 3.22 16 6 H 0.09 2.06 8.13 -2.39 -0.02 2.04 16 7 C 0.05 1.06 4.68 72.08 0.34 1.40 16 8 O -0.39 -9.44 10.74 -148.98 -1.60 -11.04 16 9 C 0.05 1.29 6.99 72.08 0.50 1.79 16 10 C 0.08 2.34 6.59 86.36 0.57 2.91 16 11 N -1.01 -31.45 3.40 -489.37 -1.66 -33.11 16 12 S 2.79 112.01 5.61 -56.49 -0.32 111.69 16 13 O -1.01 -50.03 15.75 -128.00 -2.02 -52.05 16 14 O -0.99 -39.01 12.47 -128.00 -1.60 -40.61 16 15 N -1.00 -41.24 3.23 -543.24 -1.75 -42.99 16 16 C 0.09 2.86 8.81 127.77 1.13 3.99 16 17 C 0.28 13.92 5.08 85.63 0.43 14.35 16 18 C -0.55 -31.20 9.38 25.60 0.24 -30.96 16 19 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 20 C 0.01 0.84 5.46 84.66 0.46 1.30 16 21 N -0.92 -53.59 13.29 21.45 0.28 -53.30 16 22 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 H 0.07 0.89 5.04 -2.39 -0.01 0.88 16 27 H 0.05 0.84 7.73 -2.39 -0.02 0.82 16 28 H 0.07 0.82 8.05 -2.39 -0.02 0.80 16 29 H 0.08 1.24 7.87 -2.39 -0.02 1.22 16 30 H 0.05 0.91 8.11 -2.39 -0.02 0.89 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.95 2.94 -2.39 -0.01 1.94 16 34 H 0.12 3.48 4.73 -29.64 -0.14 3.34 16 35 H 0.05 1.21 8.06 -2.39 -0.02 1.20 16 36 H 0.13 2.11 5.70 -2.38 -0.01 2.10 16 37 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.08 2.73 7.10 -2.39 -0.02 2.71 16 41 H 0.07 1.91 6.71 -2.38 -0.02 1.89 16 42 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 43 H 0.08 2.43 6.59 -2.39 -0.02 2.42 16 44 H 0.03 1.37 8.11 -2.39 -0.02 1.35 16 45 H 0.01 0.76 7.61 -2.39 -0.02 0.75 16 46 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -69.63 355.93 -0.65 -70.28 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.84 Total: 16.31 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 5.15 Total: -11.79 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -3.13 Total: -129.40 kcal Atomic # 8 Polarization: -98.47 SS G_CDS: -5.21 Total: -103.69 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 112.01 SS G_CDS: -0.32 Total: 111.69 kcal Total: -69.63 -0.65 -70.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072995729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.222 kcal (2) G-P(sol) polarization free energy of solvation -69.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds