Wall clock time and date at job start Fri Apr 10 2020 18:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46902 * 2 1 4 4 H 1.09001 * 110.91426 * 57.45402 * 3 2 1 5 5 C 1.55282 * 111.09626 * 181.35794 * 3 2 1 6 6 C 1.54322 * 103.00430 * 153.45081 * 5 3 2 7 7 N 1.47023 * 107.27149 * 337.88615 * 6 5 3 8 8 C 1.34782 * 125.64580 * 178.91578 * 7 6 5 9 9 O 1.21359 * 120.00073 * 180.02562 * 8 7 6 10 10 C 1.49345 * 120.00073 * 0.03189 * 8 7 6 11 11 O 1.21386 * 120.00161 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99673 * 179.97438 * 10 8 7 13 13 C 1.39935 * 119.99879 * 179.97438 * 12 10 8 14 14 C 1.40461 * 125.98022 * 359.72367 * 13 12 10 15 15 C 1.35216 * 107.86850 * 179.82276 * 14 13 12 16 16 N 1.34988 * 107.87272 * 0.43011 * 15 14 13 17 17 C 1.46504 * 125.97051 * 179.72855 * 16 15 14 18 18 C 1.50695 * 109.47206 * 124.97106 * 17 16 15 19 19 H 1.07999 * 120.00079 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00239 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00377 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99815 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46820 * 89.99933 * 22 20 18 24 24 H 1.48496 * 109.47303 * 209.99981 * 22 20 18 25 25 H 1.48496 * 109.47082 * 330.00094 * 22 20 18 26 26 N 1.31268 * 125.98111 * 180.02562 * 13 12 10 27 27 C 1.47419 * 108.70585 * 358.94325 * 7 6 5 28 28 H 1.08996 * 109.47127 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46420 * 299.99579 * 1 2 3 30 30 H 1.08999 * 109.46973 * 59.99660 * 1 2 3 31 31 H 1.09001 * 109.46420 * 240.00421 * 2 1 3 32 32 H 1.08999 * 109.46973 * 120.00340 * 2 1 3 33 33 H 1.09006 * 110.61769 * 35.10160 * 5 3 2 34 34 H 1.08997 * 110.91483 * 271.93842 * 5 3 2 35 35 H 1.09009 * 109.88484 * 218.47198 * 6 5 3 36 36 H 1.09003 * 110.01148 * 97.38135 * 6 5 3 37 37 H 0.97006 * 120.00583 * 359.97438 * 12 10 8 38 38 H 1.08004 * 126.06620 * 359.95035 * 14 13 12 39 39 H 1.08000 * 126.06123 * 180.17252 * 15 14 13 40 40 H 1.08996 * 109.46800 * 244.97502 * 17 16 15 41 41 H 1.08999 * 109.46831 * 4.97229 * 17 16 15 42 42 H 0.97007 * 120.00315 * 179.97438 * 21 20 18 43 43 H 1.09002 * 110.36926 * 142.96521 * 27 7 6 44 44 H 1.08995 * 110.36556 * 265.17805 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6533 1.9919 0.8583 5 6 3.5918 1.4867 -0.0343 6 6 3.8858 2.8464 -0.7024 7 7 2.6883 3.2253 -1.4666 8 6 2.5367 4.3602 -2.1777 9 8 1.4996 4.5699 -2.7720 10 6 3.6451 5.3595 -2.2344 11 8 4.6824 5.1499 -1.6397 12 7 3.4937 6.4940 -2.9459 13 6 4.5320 7.4306 -2.9987 14 6 5.7767 7.3199 -2.3572 15 6 6.4979 8.4234 -2.6575 16 7 5.7402 9.2105 -3.4503 17 6 6.1342 10.5087 -4.0033 18 6 5.9775 10.4848 -5.5019 19 1 5.6205 9.5918 -5.9933 20 6 6.2898 11.6029 -6.2456 21 7 6.1535 11.5819 -7.5535 22 14 6.9079 13.1473 -5.3957 23 1 8.3892 13.1013 -5.3016 24 1 6.4984 14.3408 -6.1786 25 1 6.3274 13.2274 -4.0312 26 7 4.5113 8.5691 -3.6518 27 6 1.6805 2.1586 -1.3257 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9860 0.6680 -0.6364 34 1 4.0044 1.4554 0.9741 35 1 4.7396 2.7528 -1.3737 36 1 4.0935 3.5988 0.0585 37 1 2.6650 6.6614 -3.4215 38 1 6.1010 6.4979 -1.7360 39 1 7.5007 8.6390 -2.3194 40 1 5.5000 11.2897 -3.5840 41 1 7.1749 10.7107 -3.7500 42 1 6.3729 12.3687 -8.0768 43 1 0.6801 2.5874 -1.2660 44 1 1.7450 1.4629 -2.1622 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120373353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:24 Heat of formation + Delta-G solvation = 19.718312 kcal Electronic energy + Delta-G solvation = -26094.404909 eV Core-core repulsion = 22242.062506 eV Total energy + Delta-G solvation = -3852.342403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20448 -40.43463 -39.01681 -37.95612 -35.21294 -34.27933 -33.29700 -31.34024 -30.99253 -29.51576 -28.84823 -27.46207 -25.94608 -23.95300 -22.67869 -22.28188 -21.21856 -20.58915 -20.02679 -19.48635 -17.86498 -17.19754 -16.93638 -16.67042 -16.51326 -15.86427 -15.45282 -14.97276 -14.76917 -14.46211 -14.14420 -13.94497 -13.80060 -13.54046 -13.38671 -13.13627 -13.07314 -12.79249 -12.58694 -12.42063 -12.29744 -12.21138 -11.65153 -11.57423 -11.20206 -11.09509 -11.03450 -11.01727 -10.77716 -10.71996 -10.10406 -10.04940 -9.58737 -9.51982 -9.06180 -8.78184 -8.29965 -7.64950 -6.24626 -4.27523 1.19987 1.95559 2.58453 2.97866 3.01088 3.14710 3.21288 3.23965 3.61514 3.64260 4.02594 4.15859 4.21533 4.29556 4.33817 4.74555 4.85085 4.87087 4.97191 5.02355 5.04140 5.28182 5.32194 5.32857 5.46313 5.51912 5.56061 5.58563 5.61597 5.63061 5.78655 5.81172 5.93346 6.02166 6.25232 6.33023 6.39458 6.60763 6.91234 7.15016 7.18616 7.30732 7.59129 7.73404 7.93436 8.30128 8.45741 8.84854 9.29696 10.87966 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038803 B = 0.002149 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.426972 B =13027.380004 C =13469.730867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.103 4.103 4 H 0.087 0.913 5 C -0.131 4.131 6 C 0.104 3.896 7 N -0.592 5.592 8 C 0.529 3.471 9 O -0.517 6.517 10 C 0.516 3.484 11 O -0.496 6.496 12 N -0.599 5.599 13 C 0.255 3.745 14 C -0.282 4.282 15 C 0.053 3.947 16 N -0.315 5.315 17 C 0.231 3.769 18 C -0.536 4.536 19 H 0.086 0.914 20 C 0.077 3.923 21 N -0.886 5.886 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.264 1.264 26 N -0.287 5.287 27 C 0.109 3.891 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.424 0.576 38 H 0.163 0.837 39 H 0.171 0.829 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.268 0.732 43 H 0.083 0.917 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -21.862 18.164 29.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.122 4.122 4 H 0.106 0.894 5 C -0.169 4.169 6 C -0.018 4.018 7 N -0.327 5.327 8 C 0.311 3.689 9 O -0.393 6.393 10 C 0.296 3.704 11 O -0.369 6.369 12 N -0.248 5.248 13 C 0.002 3.998 14 C -0.313 4.313 15 C -0.096 4.096 16 N -0.097 5.097 17 C 0.112 3.888 18 C -0.575 4.575 19 H 0.104 0.896 20 C -0.127 4.127 21 N -0.523 5.523 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.189 1.189 26 N -0.118 5.118 27 C -0.012 4.012 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.261 0.739 38 H 0.180 0.820 39 H 0.189 0.811 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.424 -20.819 17.240 27.784 hybrid contribution 0.473 0.535 0.405 0.821 sum -5.951 -20.285 17.646 27.536 Atomic orbital electron populations 1.21824 0.95502 1.01894 1.02211 1.21460 0.96178 0.94684 1.02609 1.22475 0.95619 0.96726 0.97398 0.89425 1.22829 0.95415 0.96852 1.01840 1.22253 0.87289 0.96390 0.95866 1.48180 1.18030 1.18169 1.48273 1.19558 0.87574 0.81749 0.80007 1.90798 1.28562 1.76341 1.43558 1.19808 0.87977 0.82261 0.80375 1.90687 1.27819 1.75815 1.42544 1.41992 1.17393 1.16665 1.48714 1.19013 0.89541 0.91118 1.00155 1.21530 0.94022 1.02921 1.12823 1.22574 0.98465 0.92335 0.96261 1.48699 1.08618 1.17092 1.35253 1.20093 0.95737 0.76356 0.96590 1.21096 1.46393 1.01995 0.87970 0.89598 1.24834 0.94824 0.98284 0.94804 1.69872 1.47325 1.30101 1.05021 0.86903 0.79701 0.83282 0.80188 1.19705 1.20497 1.18863 1.77474 1.04193 1.06583 1.23546 1.22447 0.92639 0.88539 0.97613 0.92555 0.92573 0.92396 0.91476 0.91254 0.90295 0.89628 0.90042 0.89982 0.73862 0.81973 0.81145 0.93870 0.93183 0.92136 0.89874 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 9.76 37.16 0.36 -0.34 16 2 C -0.11 -0.47 5.46 -26.73 -0.15 -0.62 16 3 C -0.10 -0.57 3.08 -88.41 -0.27 -0.84 16 4 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 5 C -0.13 -0.72 6.43 -24.83 -0.16 -0.88 16 6 C 0.10 0.89 5.49 -3.06 -0.02 0.88 16 7 N -0.59 -6.25 3.33 -171.07 -0.57 -6.82 16 8 C 0.53 7.16 7.91 -11.63 -0.09 7.07 16 9 O -0.52 -8.03 16.73 5.49 0.09 -7.93 16 10 C 0.52 7.76 7.82 -11.64 -0.09 7.67 16 11 O -0.50 -7.66 11.24 5.47 0.06 -7.60 16 12 N -0.60 -10.02 5.43 -11.58 -0.06 -10.08 16 13 C 0.26 5.07 8.10 -154.55 -1.25 3.82 16 14 C -0.28 -5.22 9.60 -39.82 -0.38 -5.60 16 15 C 0.05 0.98 11.43 -17.24 -0.20 0.79 16 16 N -0.31 -7.02 3.67 -62.56 -0.23 -7.25 16 17 C 0.23 5.41 5.33 -5.19 -0.03 5.38 16 18 C -0.54 -15.08 9.79 -34.44 -0.34 -15.42 16 19 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 20 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 21 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 22 Si 0.87 20.01 27.47 -169.99 -4.67 15.34 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 26 N -0.29 -6.60 12.42 31.41 0.39 -6.21 16 27 C 0.11 0.88 5.56 -2.53 -0.01 0.86 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.29 7.46 -51.93 -0.39 -0.10 16 31 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.38 8.04 -51.93 -0.42 -0.04 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.76 7.69 -51.92 -0.40 0.36 16 36 H 0.08 0.75 7.57 -51.93 -0.39 0.36 16 37 H 0.42 6.62 8.29 -40.82 -0.34 6.28 16 38 H 0.16 2.79 5.91 -52.48 -0.31 2.48 16 39 H 0.17 2.43 8.06 -52.49 -0.42 2.01 16 40 H 0.04 1.01 7.20 -51.93 -0.37 0.63 16 41 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.08 0.71 7.96 -51.93 -0.41 0.30 16 44 H 0.07 0.57 8.00 -51.93 -0.42 0.15 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -33.34 365.10 -7.82 -41.16 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.38 Total: 4.86 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -2.72 Total: 4.81 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.30 Total: -56.14 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.15 Total: -15.54 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.34 -7.82 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120373353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.875 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds