Wall clock time and date at job start Fri Apr 10 2020 18:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46902 * 2 1 4 4 H 1.09001 * 110.91426 * 57.45402 * 3 2 1 5 5 C 1.55282 * 111.09626 * 181.35794 * 3 2 1 6 6 C 1.54322 * 103.00430 * 153.45081 * 5 3 2 7 7 N 1.47023 * 107.27149 * 337.88615 * 6 5 3 8 8 C 1.34782 * 125.64580 * 178.91578 * 7 6 5 9 9 O 1.21359 * 120.00073 * 180.02562 * 8 7 6 10 10 C 1.49345 * 120.00073 * 0.03189 * 8 7 6 11 11 O 1.21386 * 120.00161 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99673 * 179.97438 * 10 8 7 13 13 C 1.39935 * 119.99879 * 179.97438 * 12 10 8 14 14 C 1.40461 * 125.98022 * 359.72367 * 13 12 10 15 15 C 1.35216 * 107.86850 * 179.82276 * 14 13 12 16 16 N 1.34988 * 107.87272 * 0.43011 * 15 14 13 17 17 C 1.46504 * 125.97051 * 179.72855 * 16 15 14 18 18 C 1.50695 * 109.47206 * 124.97106 * 17 16 15 19 19 H 1.07999 * 120.00079 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00239 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00377 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99815 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46820 * 89.99933 * 22 20 18 24 24 H 1.48496 * 109.47303 * 209.99981 * 22 20 18 25 25 H 1.48496 * 109.47082 * 330.00094 * 22 20 18 26 26 N 1.31268 * 125.98111 * 180.02562 * 13 12 10 27 27 C 1.47419 * 108.70585 * 358.94325 * 7 6 5 28 28 H 1.08996 * 109.47127 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46420 * 299.99579 * 1 2 3 30 30 H 1.08999 * 109.46973 * 59.99660 * 1 2 3 31 31 H 1.09001 * 109.46420 * 240.00421 * 2 1 3 32 32 H 1.08999 * 109.46973 * 120.00340 * 2 1 3 33 33 H 1.09006 * 110.61769 * 35.10160 * 5 3 2 34 34 H 1.08997 * 110.91483 * 271.93842 * 5 3 2 35 35 H 1.09009 * 109.88484 * 218.47198 * 6 5 3 36 36 H 1.09003 * 110.01148 * 97.38135 * 6 5 3 37 37 H 0.97006 * 120.00583 * 359.97438 * 12 10 8 38 38 H 1.08004 * 126.06620 * 359.95035 * 14 13 12 39 39 H 1.08000 * 126.06123 * 180.17252 * 15 14 13 40 40 H 1.08996 * 109.46800 * 244.97502 * 17 16 15 41 41 H 1.08999 * 109.46831 * 4.97229 * 17 16 15 42 42 H 0.97007 * 120.00315 * 179.97438 * 21 20 18 43 43 H 1.09002 * 110.36926 * 142.96521 * 27 7 6 44 44 H 1.08995 * 110.36556 * 265.17805 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6533 1.9919 0.8583 5 6 3.5918 1.4867 -0.0343 6 6 3.8858 2.8464 -0.7024 7 7 2.6883 3.2253 -1.4666 8 6 2.5367 4.3602 -2.1777 9 8 1.4996 4.5699 -2.7720 10 6 3.6451 5.3595 -2.2344 11 8 4.6824 5.1499 -1.6397 12 7 3.4937 6.4940 -2.9459 13 6 4.5320 7.4306 -2.9987 14 6 5.7767 7.3199 -2.3572 15 6 6.4979 8.4234 -2.6575 16 7 5.7402 9.2105 -3.4503 17 6 6.1342 10.5087 -4.0033 18 6 5.9775 10.4848 -5.5019 19 1 5.6205 9.5918 -5.9933 20 6 6.2898 11.6029 -6.2456 21 7 6.1535 11.5819 -7.5535 22 14 6.9079 13.1473 -5.3957 23 1 8.3892 13.1013 -5.3016 24 1 6.4984 14.3408 -6.1786 25 1 6.3274 13.2274 -4.0312 26 7 4.5113 8.5691 -3.6518 27 6 1.6805 2.1586 -1.3257 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9860 0.6680 -0.6364 34 1 4.0044 1.4554 0.9741 35 1 4.7396 2.7528 -1.3737 36 1 4.0935 3.5988 0.0585 37 1 2.6650 6.6614 -3.4215 38 1 6.1010 6.4979 -1.7360 39 1 7.5007 8.6390 -2.3194 40 1 5.5000 11.2897 -3.5840 41 1 7.1749 10.7107 -3.7500 42 1 6.3729 12.3687 -8.0768 43 1 0.6801 2.5874 -1.2660 44 1 1.7450 1.4629 -2.1622 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120373353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:23 Heat of formation + Delta-G solvation = -2.986250 kcal Electronic energy + Delta-G solvation = -26095.389453 eV Core-core repulsion = 22242.062506 eV Total energy + Delta-G solvation = -3853.326947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.51157 -41.68904 -40.05810 -38.93517 -36.52526 -35.31882 -34.90926 -33.15614 -31.62409 -31.07085 -29.61489 -29.09675 -26.98871 -25.06084 -24.04326 -23.11859 -22.54023 -21.56016 -21.07431 -20.70155 -19.13731 -18.92087 -18.25532 -17.95349 -17.58534 -16.97852 -16.77994 -16.35935 -15.90675 -15.77463 -15.29545 -14.91658 -14.86877 -14.45822 -14.40924 -14.35906 -14.01063 -13.91446 -13.90365 -13.64510 -13.44457 -13.07291 -12.78611 -12.71092 -12.47089 -12.37812 -12.01607 -11.84009 -11.70527 -11.55634 -11.53216 -11.50196 -11.43751 -10.87481 -10.74224 -9.96145 -9.84487 -9.21637 -8.37864 -6.48768 0.00183 0.77795 1.10497 1.36410 1.39771 1.49437 1.69956 1.75156 2.21714 2.28924 2.41797 2.94644 3.05514 3.52827 3.60637 3.84703 3.85959 4.15345 4.28074 4.34054 4.38472 4.49988 4.54290 4.57170 4.64196 4.70765 4.80148 4.83342 4.84628 4.89438 4.96109 5.02387 5.04310 5.12881 5.23058 5.24798 5.26143 5.41538 5.53210 5.72647 5.82470 5.97534 6.03999 6.36984 6.41360 6.57210 6.70446 6.91556 7.14160 8.79304 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038803 B = 0.002149 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.426972 B =13027.380004 C =13469.730867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.106 4.106 3 C -0.093 4.093 4 H 0.089 0.911 5 C -0.120 4.120 6 C 0.097 3.903 7 N -0.584 5.584 8 C 0.528 3.472 9 O -0.544 6.544 10 C 0.519 3.481 11 O -0.497 6.497 12 N -0.604 5.604 13 C 0.258 3.742 14 C -0.287 4.287 15 C 0.066 3.934 16 N -0.340 5.340 17 C 0.238 3.762 18 C -0.549 4.549 19 H 0.024 0.976 20 C 0.013 3.987 21 N -0.943 5.943 22 Si 0.958 3.042 23 H -0.251 1.251 24 H -0.282 1.282 25 H -0.238 1.238 26 N -0.345 5.345 27 C 0.102 3.898 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.426 0.574 38 H 0.178 0.822 39 H 0.218 0.782 40 H 0.047 0.953 41 H 0.087 0.913 42 H 0.272 0.728 43 H 0.075 0.925 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.498 -22.645 21.312 31.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.144 4.144 3 C -0.112 4.112 4 H 0.108 0.892 5 C -0.158 4.158 6 C -0.025 4.025 7 N -0.317 5.317 8 C 0.310 3.690 9 O -0.423 6.423 10 C 0.300 3.700 11 O -0.370 6.370 12 N -0.253 5.253 13 C 0.004 3.996 14 C -0.318 4.318 15 C -0.082 4.082 16 N -0.122 5.122 17 C 0.119 3.881 18 C -0.587 4.587 19 H 0.043 0.957 20 C -0.186 4.186 21 N -0.581 5.581 22 Si 0.778 3.222 23 H -0.175 1.175 24 H -0.208 1.208 25 H -0.161 1.161 26 N -0.176 5.176 27 C -0.019 4.019 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.263 0.737 38 H 0.196 0.804 39 H 0.234 0.766 40 H 0.064 0.936 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.943 -21.680 20.442 30.205 hybrid contribution -0.037 0.557 -0.571 0.799 sum -4.981 -21.123 19.871 29.425 Atomic orbital electron populations 1.21841 0.95843 1.02153 1.01802 1.21440 0.95814 0.93632 1.03493 1.22455 0.95742 0.97307 0.95710 0.89224 1.22832 0.95203 0.94988 1.02779 1.22447 0.86290 0.98228 0.95503 1.48361 1.19335 1.17330 1.46646 1.19242 0.86703 0.82357 0.80687 1.90787 1.29222 1.77087 1.45181 1.20153 0.88412 0.81889 0.79555 1.90659 1.28087 1.75807 1.42398 1.42133 1.17012 1.16823 1.49368 1.19366 0.90628 0.90652 0.98920 1.21793 0.93441 1.03546 1.12983 1.23351 0.99676 0.91073 0.94135 1.48585 1.09197 1.17507 1.36898 1.19940 0.97656 0.77458 0.93090 1.21235 1.46319 1.00184 0.90977 0.95710 1.25963 0.94678 1.02601 0.95382 1.70058 1.49073 1.31633 1.07375 0.85586 0.79993 0.76915 0.79684 1.17520 1.20786 1.16134 1.77382 1.05756 1.08464 1.25999 1.22714 0.91683 0.87945 0.99576 0.91988 0.92585 0.93261 0.91085 0.89831 0.89082 0.87625 0.90702 0.90432 0.73658 0.80446 0.76562 0.93559 0.89526 0.91882 0.90640 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.76 71.99 0.70 -0.45 16 2 C -0.11 -0.62 5.46 30.60 0.17 -0.46 16 3 C -0.09 -0.81 3.08 -9.36 -0.03 -0.84 16 4 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 5 C -0.12 -0.97 6.43 31.83 0.20 -0.76 16 6 C 0.10 1.51 5.49 86.73 0.48 1.99 16 7 N -0.58 -11.89 3.33 -813.50 -2.71 -14.60 16 8 C 0.53 14.42 7.91 87.24 0.69 15.11 16 9 O -0.54 -17.35 16.73 -3.27 -0.05 -17.41 16 10 C 0.52 15.69 7.82 87.24 0.68 16.37 16 11 O -0.50 -14.98 11.24 -3.36 -0.04 -15.02 16 12 N -0.60 -20.78 5.43 -308.90 -1.68 -22.46 16 13 C 0.26 10.44 8.10 133.40 1.08 11.52 16 14 C -0.29 -10.30 9.60 22.11 0.21 -10.09 16 15 C 0.07 2.30 11.43 83.51 0.95 3.25 16 16 N -0.34 -15.05 3.67 -351.85 -1.29 -16.34 16 17 C 0.24 10.91 5.33 85.63 0.46 11.36 16 18 C -0.55 -31.81 9.79 25.60 0.25 -31.56 16 19 H 0.02 1.68 8.06 -2.91 -0.02 1.66 16 20 C 0.01 0.71 5.47 84.65 0.46 1.17 16 21 N -0.94 -58.51 13.96 21.44 0.30 -58.22 16 22 Si 0.96 40.58 27.47 68.60 1.88 42.47 16 23 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.24 -9.05 6.54 99.48 0.65 -8.40 16 26 N -0.35 -16.36 12.42 -54.54 -0.68 -17.04 16 27 C 0.10 1.52 5.56 86.85 0.48 2.00 16 28 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.44 7.46 -2.39 -0.02 0.42 16 31 H 0.07 0.40 8.10 -2.39 -0.02 0.38 16 32 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.09 0.57 8.04 -2.38 -0.02 0.55 16 34 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 1.29 7.69 -2.38 -0.02 1.27 16 36 H 0.08 1.30 7.57 -2.39 -0.02 1.29 16 37 H 0.43 14.07 8.29 -92.70 -0.77 13.30 16 38 H 0.18 5.76 5.91 -2.91 -0.02 5.74 16 39 H 0.22 5.26 8.06 -2.91 -0.02 5.24 16 40 H 0.05 2.08 7.20 -2.39 -0.02 2.06 16 41 H 0.09 3.34 7.50 -2.39 -0.02 3.32 16 42 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 43 H 0.08 1.27 7.96 -2.39 -0.02 1.25 16 44 H 0.08 1.14 8.00 -2.39 -0.02 1.12 16 Total: -1.00 -76.87 365.10 2.73 -74.13 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.20 Total: 25.88 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 6.80 Total: 18.60 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -6.05 Total: -128.65 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.09 Total: -32.43 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.88 Total: 42.47 kcal Total: -76.87 2.73 -74.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120373353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.148 kcal (2) G-P(sol) polarization free energy of solvation -76.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds