Wall clock time and date at job start Fri Apr 10 2020 18:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46933 * 2 1 4 4 O 1.42897 * 109.47232 * 119.99615 * 2 1 3 5 5 C 1.53000 * 109.47102 * 239.99905 * 2 1 3 6 6 N 1.46898 * 109.46905 * 173.87690 * 5 2 1 7 7 C 1.46904 * 110.99752 * 201.69976 * 6 5 2 8 8 C 1.53239 * 109.33644 * 172.74814 * 7 6 5 9 9 N 1.47077 * 108.52546 * 53.82856 * 8 7 6 10 10 S 1.65604 * 120.88044 * 128.83169 * 9 8 7 11 11 O 1.42100 * 104.27694 * 26.05238 * 10 9 8 12 12 O 1.42103 * 104.27586 * 153.91013 * 10 9 8 13 13 C 1.81396 * 104.45037 * 269.97989 * 10 9 8 14 14 C 1.53005 * 109.46775 * 180.02562 * 13 10 9 15 15 C 1.50706 * 109.47019 * 180.02562 * 14 13 10 16 16 H 1.08006 * 119.99580 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00084 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99823 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 119.99952 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47568 * 89.99780 * 19 17 15 21 21 H 1.48505 * 109.46958 * 209.99824 * 19 17 15 22 22 H 1.48502 * 109.47371 * 329.99828 * 19 17 15 23 23 C 1.47079 * 118.23670 * 308.81647 * 9 8 7 24 24 C 1.46898 * 110.99936 * 77.39911 * 6 5 2 25 25 H 1.09008 * 109.47087 * 299.99860 * 1 2 3 26 26 H 1.08997 * 109.47549 * 60.00229 * 1 2 3 27 27 H 1.09004 * 109.46961 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47021 * 184.91056 * 3 2 1 29 29 H 1.09008 * 109.46927 * 304.90636 * 3 2 1 30 30 H 1.08995 * 109.47148 * 64.90666 * 3 2 1 31 31 H 0.96701 * 113.99856 * 60.00235 * 4 2 1 32 32 H 1.09000 * 109.47064 * 293.87902 * 5 2 1 33 33 H 1.08998 * 109.46738 * 53.87831 * 5 2 1 34 34 H 1.09002 * 109.48962 * 292.70660 * 7 6 5 35 35 H 1.08997 * 109.49490 * 52.78849 * 7 6 5 36 36 H 1.09004 * 109.62818 * 294.11614 * 8 7 6 37 37 H 1.09007 * 109.62521 * 173.54067 * 8 7 6 38 38 H 1.09002 * 109.47221 * 299.99893 * 13 10 9 39 39 H 1.08997 * 109.47404 * 60.00475 * 13 10 9 40 40 H 1.09002 * 109.47057 * 299.99869 * 14 13 10 41 41 H 1.08996 * 109.46998 * 60.00553 * 14 13 10 42 42 H 0.97006 * 119.99772 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.62904 * 291.46935 * 23 9 8 44 44 H 1.08998 * 109.62637 * 170.89404 * 23 9 8 45 45 H 1.08995 * 109.49583 * 307.20666 * 24 6 5 46 46 H 1.08996 * 109.49649 * 67.29315 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5015 -0.5946 -1.3253 7 6 3.9765 -0.7976 -2.7005 8 6 5.4740 -0.4804 -2.7721 9 7 6.1698 -1.2767 -1.7499 10 16 7.4875 -2.1995 -2.1427 11 8 8.0367 -1.5577 -3.2854 12 8 8.2235 -2.2935 -0.9307 13 6 6.7922 -3.8136 -2.5919 14 6 7.9247 -4.7669 -2.9789 15 6 7.3470 -6.1077 -3.3526 16 1 6.2789 -6.2641 -3.3180 17 6 8.1819 -7.1343 -3.7398 18 7 7.6778 -8.3045 -4.0654 19 14 10.0291 -6.8636 -3.8003 20 1 10.6235 -7.2089 -2.4839 21 1 10.6217 -7.7273 -4.8530 22 1 10.3107 -5.4392 -4.1121 23 6 5.6643 -1.2315 -0.3694 24 6 4.1593 -1.5192 -0.3924 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1263 1.4438 -0.0880 29 1 1.6065 1.9811 -0.8428 30 1 1.7501 1.9303 0.9306 31 1 1.7210 -1.5951 1.2329 32 1 1.7688 -1.7757 -1.1961 33 1 1.5899 -0.2746 -2.1358 34 1 3.8099 -1.8342 -2.9936 35 1 3.4321 -0.1365 -3.3748 36 1 5.6331 0.5808 -2.5804 37 1 5.8561 -0.7382 -3.7599 38 1 6.2471 -4.2237 -1.7417 39 1 6.1128 -3.6944 -3.4358 40 1 8.4701 -4.3569 -3.8289 41 1 8.6037 -4.8860 -2.1346 42 1 8.2652 -9.0270 -4.3374 43 1 5.8416 -0.2425 0.0533 44 1 6.1722 -1.9859 0.2314 45 1 3.7474 -1.3814 0.6073 46 1 3.9902 -2.5457 -0.7176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160829772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:41 Heat of formation + Delta-G solvation = -116.148262 kcal Electronic energy + Delta-G solvation = -26524.130366 eV Core-core repulsion = 22769.047546 eV Total energy + Delta-G solvation = -3755.082819 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.75083 -37.79208 -36.78368 -35.57845 -34.43478 -33.95843 -32.48442 -31.49704 -31.20516 -27.73431 -27.58053 -25.99035 -24.24940 -23.87624 -21.45995 -20.59882 -20.37881 -18.62213 -17.79789 -17.06175 -16.77212 -16.10020 -15.71694 -15.64887 -15.59100 -14.86042 -14.75182 -14.59141 -14.33719 -14.19544 -13.63064 -13.58739 -13.05382 -12.84869 -12.71109 -12.46544 -12.39210 -12.12669 -11.97313 -11.91944 -11.89130 -11.72116 -11.65563 -11.32722 -11.28895 -11.26277 -11.20579 -11.05842 -10.88235 -10.46230 -10.22202 -10.03537 -9.69956 -9.43367 -8.91848 -8.68270 -8.42096 -6.18724 -4.20035 0.63256 2.89359 3.25341 3.32671 3.37103 3.57429 3.93451 4.20019 4.34243 4.45495 4.50492 4.56627 4.60209 4.73413 4.95332 4.98865 5.10192 5.13264 5.17990 5.24143 5.29106 5.35127 5.38713 5.48493 5.50504 5.53563 5.55806 5.63599 5.68868 5.81772 5.83508 5.86053 6.00361 6.03732 6.19885 6.26574 6.60092 6.79791 6.84711 6.86839 6.92538 7.36421 7.52816 8.34360 8.81835 9.41077 10.93677 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020540 B = 0.003277 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.869521 B = 8541.884302 C = 9184.457231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.133 3.867 3 C -0.129 4.129 4 O -0.554 6.554 5 C 0.029 3.971 6 N -0.525 5.525 7 C 0.036 3.964 8 C 0.130 3.870 9 N -1.007 6.007 10 S 2.588 3.412 11 O -0.964 6.964 12 O -0.963 6.963 13 C -0.583 4.583 14 C -0.007 4.007 15 C -0.519 4.519 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.870 3.130 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.262 1.262 23 C 0.129 3.871 24 C 0.025 3.975 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.372 0.628 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.032 0.968 41 H 0.028 0.972 42 H 0.266 0.734 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.113 0.887 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.754 18.197 6.975 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.092 3.908 3 C -0.187 4.187 4 O -0.360 6.360 5 C -0.100 4.100 6 N -0.250 5.250 7 C -0.093 4.093 8 C 0.004 3.996 9 N -0.844 5.844 10 S 2.687 3.313 11 O -0.954 6.954 12 O -0.953 6.953 13 C -0.716 4.716 14 C -0.046 4.046 15 C -0.558 4.558 16 H 0.095 0.905 17 C -0.131 4.131 18 N -0.534 5.534 19 Si 0.696 3.304 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.186 1.186 23 C 0.004 3.996 24 C -0.104 4.104 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.220 0.780 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.130 0.870 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.386 19.419 7.184 24.655 hybrid contribution -0.291 -1.923 -0.642 2.048 sum -13.677 17.496 6.542 23.150 Atomic orbital electron populations 1.22486 0.95885 1.02356 1.02931 1.21259 0.91653 0.93853 0.84062 1.21611 1.03658 0.92257 1.01142 1.86578 1.76406 1.28731 1.44286 1.22815 0.88815 0.99062 0.99293 1.61813 1.04240 1.52793 1.06119 1.22582 0.96277 1.00389 0.90054 1.21421 0.90506 0.96434 0.91273 1.57990 1.50220 1.60945 1.15248 1.05736 0.74135 0.77151 0.74297 1.93539 1.75887 1.73538 1.52446 1.93542 1.68700 1.87333 1.45759 1.30356 1.11730 1.18414 1.11077 1.19406 0.92066 0.95888 0.97231 1.20840 0.95653 0.93067 1.46267 0.90537 1.24985 0.98950 0.94914 0.94263 1.69881 1.35711 1.02634 1.45160 0.86919 0.85691 0.79185 0.78631 1.19626 1.20729 1.18599 1.21449 0.93112 1.03297 0.81757 1.22939 0.94790 0.93616 0.99061 0.91581 0.91574 0.92480 0.90097 0.91924 0.92852 0.78041 0.94230 0.90116 0.94083 0.89793 0.90595 0.88912 0.85926 0.85938 0.94981 0.95405 0.92367 0.90640 0.88987 0.86951 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 8.81 37.16 0.33 -0.69 16 2 C 0.13 0.95 1.17 -90.62 -0.11 0.84 16 3 C -0.13 -1.00 8.71 37.16 0.32 -0.68 16 4 O -0.55 -4.39 10.16 -35.23 -0.36 -4.75 16 5 C 0.03 0.22 4.33 -3.83 -0.02 0.20 16 6 N -0.53 -4.86 3.43 -234.32 -0.80 -5.66 16 7 C 0.04 0.35 5.58 -3.70 -0.02 0.33 16 8 C 0.13 1.47 6.46 -3.60 -0.02 1.44 16 9 N -1.01 -13.51 3.26 -113.23 -0.37 -13.88 16 10 S 2.59 45.08 5.41 -107.50 -0.58 44.49 16 11 O -0.96 -19.08 16.79 -57.54 -0.97 -20.05 16 12 O -0.96 -19.14 16.79 -57.54 -0.97 -20.10 16 13 C -0.58 -10.79 6.12 37.16 0.23 -10.56 16 14 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 15 C -0.52 -14.53 9.66 -34.44 -0.33 -14.87 16 16 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 18 N -0.90 -27.07 13.96 55.43 0.77 -26.29 16 19 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 23 C 0.13 1.53 6.47 -3.60 -0.02 1.51 16 24 C 0.02 0.25 5.38 -3.70 -0.02 0.23 16 25 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.76 7.27 -51.93 -0.38 0.38 16 29 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.37 1.90 8.99 45.56 0.41 2.31 16 32 H 0.04 0.30 7.97 -51.93 -0.41 -0.11 16 33 H 0.08 0.54 7.74 -51.93 -0.40 0.14 16 34 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.64 7.89 -51.93 -0.41 0.23 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.06 7.19 -51.92 -0.37 0.68 16 38 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 39 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 40 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 41 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.10 7.19 -51.93 -0.37 0.73 16 45 H 0.11 1.04 5.19 -51.93 -0.27 0.77 16 46 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -34.77 370.31 -9.45 -44.22 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.21 Total: 0.12 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 0.13 Total: -20.54 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.40 Total: -45.84 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -2.29 Total: -44.90 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 45.08 SS G_CDS: -0.58 Total: 44.49 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.77 -9.45 -44.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160829772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.931 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds