Wall clock time and date at job start Fri Apr 10 2020 18:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46933 * 2 1 4 4 O 1.42897 * 109.47232 * 119.99615 * 2 1 3 5 5 C 1.53000 * 109.47102 * 239.99905 * 2 1 3 6 6 N 1.46898 * 109.46905 * 173.87690 * 5 2 1 7 7 C 1.46904 * 110.99752 * 201.69976 * 6 5 2 8 8 C 1.53239 * 109.33644 * 172.74814 * 7 6 5 9 9 N 1.47077 * 108.52546 * 53.82856 * 8 7 6 10 10 S 1.65604 * 120.88044 * 128.83169 * 9 8 7 11 11 O 1.42100 * 104.27694 * 26.05238 * 10 9 8 12 12 O 1.42103 * 104.27586 * 153.91013 * 10 9 8 13 13 C 1.81396 * 104.45037 * 269.97989 * 10 9 8 14 14 C 1.53005 * 109.46775 * 180.02562 * 13 10 9 15 15 C 1.50706 * 109.47019 * 180.02562 * 14 13 10 16 16 H 1.08006 * 119.99580 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00084 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99823 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 119.99952 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47568 * 89.99780 * 19 17 15 21 21 H 1.48505 * 109.46958 * 209.99824 * 19 17 15 22 22 H 1.48502 * 109.47371 * 329.99828 * 19 17 15 23 23 C 1.47079 * 118.23670 * 308.81647 * 9 8 7 24 24 C 1.46898 * 110.99936 * 77.39911 * 6 5 2 25 25 H 1.09008 * 109.47087 * 299.99860 * 1 2 3 26 26 H 1.08997 * 109.47549 * 60.00229 * 1 2 3 27 27 H 1.09004 * 109.46961 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47021 * 184.91056 * 3 2 1 29 29 H 1.09008 * 109.46927 * 304.90636 * 3 2 1 30 30 H 1.08995 * 109.47148 * 64.90666 * 3 2 1 31 31 H 0.96701 * 113.99856 * 60.00235 * 4 2 1 32 32 H 1.09000 * 109.47064 * 293.87902 * 5 2 1 33 33 H 1.08998 * 109.46738 * 53.87831 * 5 2 1 34 34 H 1.09002 * 109.48962 * 292.70660 * 7 6 5 35 35 H 1.08997 * 109.49490 * 52.78849 * 7 6 5 36 36 H 1.09004 * 109.62818 * 294.11614 * 8 7 6 37 37 H 1.09007 * 109.62521 * 173.54067 * 8 7 6 38 38 H 1.09002 * 109.47221 * 299.99893 * 13 10 9 39 39 H 1.08997 * 109.47404 * 60.00475 * 13 10 9 40 40 H 1.09002 * 109.47057 * 299.99869 * 14 13 10 41 41 H 1.08996 * 109.46998 * 60.00553 * 14 13 10 42 42 H 0.97006 * 119.99772 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.62904 * 291.46935 * 23 9 8 44 44 H 1.08998 * 109.62637 * 170.89404 * 23 9 8 45 45 H 1.08995 * 109.49583 * 307.20666 * 24 6 5 46 46 H 1.08996 * 109.49649 * 67.29315 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5015 -0.5946 -1.3253 7 6 3.9765 -0.7976 -2.7005 8 6 5.4740 -0.4804 -2.7721 9 7 6.1698 -1.2767 -1.7499 10 16 7.4875 -2.1995 -2.1427 11 8 8.0367 -1.5577 -3.2854 12 8 8.2235 -2.2935 -0.9307 13 6 6.7922 -3.8136 -2.5919 14 6 7.9247 -4.7669 -2.9789 15 6 7.3470 -6.1077 -3.3526 16 1 6.2789 -6.2641 -3.3180 17 6 8.1819 -7.1343 -3.7398 18 7 7.6778 -8.3045 -4.0654 19 14 10.0291 -6.8636 -3.8003 20 1 10.6235 -7.2089 -2.4839 21 1 10.6217 -7.7273 -4.8530 22 1 10.3107 -5.4392 -4.1121 23 6 5.6643 -1.2315 -0.3694 24 6 4.1593 -1.5192 -0.3924 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1263 1.4438 -0.0880 29 1 1.6065 1.9811 -0.8428 30 1 1.7501 1.9303 0.9306 31 1 1.7210 -1.5951 1.2329 32 1 1.7688 -1.7757 -1.1961 33 1 1.5899 -0.2746 -2.1358 34 1 3.8099 -1.8342 -2.9936 35 1 3.4321 -0.1365 -3.3748 36 1 5.6331 0.5808 -2.5804 37 1 5.8561 -0.7382 -3.7599 38 1 6.2471 -4.2237 -1.7417 39 1 6.1128 -3.6944 -3.4358 40 1 8.4701 -4.3569 -3.8289 41 1 8.6037 -4.8860 -2.1346 42 1 8.2652 -9.0270 -4.3374 43 1 5.8416 -0.2425 0.0533 44 1 6.1722 -1.9859 0.2314 45 1 3.7474 -1.3814 0.6073 46 1 3.9902 -2.5457 -0.7176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160829772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:40 Heat of formation + Delta-G solvation = -143.738708 kcal Electronic energy + Delta-G solvation = -26525.326777 eV Core-core repulsion = 22769.047546 eV Total energy + Delta-G solvation = -3756.279231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45377 -38.52441 -38.27560 -37.07432 -35.92876 -35.25625 -33.50238 -33.09243 -32.06300 -28.51531 -28.09655 -27.90380 -25.02901 -24.73298 -23.23051 -21.45701 -21.14992 -19.89740 -19.38437 -18.60728 -17.50178 -17.33916 -17.11544 -16.47002 -16.39072 -16.33163 -15.80314 -15.56260 -15.44459 -15.21102 -15.06584 -14.84385 -14.34496 -13.84007 -13.75782 -13.60595 -13.29390 -13.25396 -13.10108 -13.07629 -12.99322 -12.91893 -12.85595 -12.61280 -12.45342 -12.27936 -12.20394 -12.05945 -12.03399 -11.87542 -11.71379 -11.54222 -11.31277 -10.86747 -10.64647 -9.97697 -9.16682 -8.39041 -6.45006 -0.77790 1.30585 1.32370 1.42596 1.64869 2.27654 2.77610 2.88801 2.94908 3.10909 3.42399 3.61093 3.91217 3.91825 3.97056 4.03784 4.16062 4.20046 4.28480 4.35886 4.37400 4.50169 4.53057 4.62909 4.73665 4.79091 4.83722 4.92824 4.97978 5.02128 5.03383 5.03708 5.10212 5.14065 5.14509 5.25487 5.33523 5.44497 5.58192 5.61320 6.12121 6.13804 6.16023 6.60449 6.92998 7.19574 8.76511 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020540 B = 0.003277 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.869521 B = 8541.884302 C = 9184.457231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.133 3.867 3 C -0.128 4.128 4 O -0.570 6.570 5 C 0.030 3.970 6 N -0.528 5.528 7 C 0.039 3.961 8 C 0.121 3.879 9 N -0.998 5.998 10 S 2.615 3.385 11 O -0.986 6.986 12 O -0.987 6.987 13 C -0.586 4.586 14 C -0.016 4.016 15 C -0.528 4.528 16 H 0.048 0.952 17 C 0.014 3.986 18 N -0.939 5.939 19 Si 0.925 3.075 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.250 1.250 23 C 0.123 3.877 24 C 0.031 3.969 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.383 0.617 32 H 0.041 0.959 33 H 0.093 0.907 34 H 0.034 0.966 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.270 0.730 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.122 0.878 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.363 19.835 7.178 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.092 3.908 3 C -0.185 4.185 4 O -0.378 6.378 5 C -0.098 4.098 6 N -0.253 5.253 7 C -0.091 4.091 8 C -0.004 4.004 9 N -0.838 5.838 10 S 2.712 3.288 11 O -0.977 6.977 12 O -0.978 6.978 13 C -0.717 4.717 14 C -0.055 4.055 15 C -0.567 4.567 16 H 0.066 0.934 17 C -0.184 4.184 18 N -0.579 5.579 19 Si 0.747 3.253 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.174 1.174 23 C -0.002 4.002 24 C -0.099 4.099 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.233 0.767 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.053 0.947 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.140 0.860 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -14.007 21.046 7.386 26.337 hybrid contribution -0.234 -2.374 -0.670 2.478 sum -14.241 18.671 6.715 24.424 Atomic orbital electron populations 1.22425 0.94626 1.02889 1.03194 1.21278 0.92523 0.93307 0.83647 1.21594 1.02573 0.92928 1.01416 1.86543 1.76803 1.29774 1.44682 1.22869 0.87550 0.99360 1.00048 1.61822 1.05337 1.52378 1.05731 1.22592 0.95133 1.00611 0.90726 1.21684 0.91561 0.96586 0.90542 1.57694 1.49633 1.59951 1.16495 1.04724 0.74373 0.76475 0.73217 1.93504 1.76970 1.73708 1.53492 1.93505 1.70068 1.87588 1.46603 1.30339 1.10455 1.18743 1.12194 1.19363 0.93817 0.95019 0.97275 1.21150 0.94608 0.95186 1.45709 0.93380 1.25865 1.03836 0.94659 0.94063 1.70005 1.37552 1.03687 1.46640 0.86026 0.80036 0.79847 0.79351 1.18484 1.19777 1.17360 1.21647 0.94332 1.03606 0.80596 1.22880 0.93546 0.93517 0.99908 0.91966 0.90663 0.91833 0.91770 0.90713 0.93384 0.76749 0.94085 0.88840 0.94745 0.87399 0.89524 0.89027 0.84734 0.84640 0.95001 0.95174 0.92063 0.89988 0.89373 0.86035 0.95105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 8.81 71.98 0.63 -0.93 16 2 C 0.13 1.62 1.17 -10.79 -0.01 1.60 16 3 C -0.13 -1.74 8.71 71.98 0.63 -1.12 16 4 O -0.57 -8.05 10.16 -148.98 -1.51 -9.56 16 5 C 0.03 0.37 4.33 86.30 0.37 0.75 16 6 N -0.53 -8.59 3.43 -895.26 -3.07 -11.66 16 7 C 0.04 0.64 5.58 86.38 0.48 1.13 16 8 C 0.12 2.51 6.46 86.35 0.56 3.07 16 9 N -1.00 -25.34 3.26 -512.16 -1.67 -27.01 16 10 S 2.61 88.46 5.41 -56.49 -0.31 88.16 16 11 O -0.99 -38.01 16.79 -127.65 -2.14 -40.15 16 12 O -0.99 -38.39 16.79 -127.65 -2.14 -40.53 16 13 C -0.59 -21.33 6.12 71.98 0.44 -20.89 16 14 C -0.02 -0.74 4.05 29.85 0.12 -0.62 16 15 C -0.53 -29.93 9.66 25.60 0.25 -29.68 16 16 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 17 C 0.01 0.84 5.47 84.65 0.46 1.30 16 18 N -0.94 -57.70 13.96 21.45 0.30 -57.40 16 19 Si 0.92 43.96 27.47 68.60 1.88 45.84 16 20 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 23 C 0.12 2.74 6.47 86.35 0.56 3.30 16 24 C 0.03 0.56 5.38 86.38 0.46 1.03 16 25 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 1.10 7.27 -2.39 -0.02 1.08 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.38 3.24 8.99 -74.06 -0.67 2.58 16 32 H 0.04 0.52 7.97 -2.39 -0.02 0.50 16 33 H 0.09 0.95 7.74 -2.39 -0.02 0.93 16 34 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.11 1.30 7.89 -2.39 -0.02 1.28 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.93 7.19 -2.38 -0.02 1.92 16 38 H 0.13 4.50 8.14 -2.39 -0.02 4.48 16 39 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 40 H 0.03 1.50 7.20 -2.39 -0.02 1.48 16 41 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 42 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.09 2.03 7.19 -2.39 -0.02 2.01 16 45 H 0.12 2.04 5.19 -2.39 -0.01 2.03 16 46 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -74.16 370.31 -3.47 -77.63 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.24 Total: 15.75 kcal Atomic # 6 Polarization: -46.02 SS G_CDS: 4.96 Total: -41.06 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -4.44 Total: -96.07 kcal Atomic # 8 Polarization: -84.44 SS G_CDS: -5.80 Total: -90.24 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Atomic # 16 Polarization: 88.46 SS G_CDS: -0.31 Total: 88.16 kcal Total: -74.16 -3.47 -77.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160829772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.108 kcal (2) G-P(sol) polarization free energy of solvation -74.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds