Wall clock time and date at job start Fri Apr 10 2020 18:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47256 * 90.00491 * 9 7 5 11 11 H 1.48506 * 109.46930 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47104 * 330.00193 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21354 * 120.00449 * 0.02562 * 14 13 3 16 16 C 1.49345 * 119.99436 * 179.97438 * 14 13 3 17 17 O 1.21380 * 120.00655 * 0.02562 * 16 14 13 18 18 N 1.34780 * 119.99791 * 180.02562 * 16 14 13 19 19 C 1.39926 * 120.00228 * 180.02562 * 18 16 14 20 20 C 1.40643 * 125.95338 * 359.71796 * 19 18 16 21 21 C 1.34671 * 107.75647 * 179.80593 * 20 19 18 22 22 N 1.35356 * 108.03128 * 0.47413 * 21 20 19 23 23 N 1.31445 * 125.95765 * 180.02562 * 19 18 16 24 24 C 1.46608 * 124.52877 * 179.65903 * 22 21 20 25 25 C 1.53252 * 108.80119 * 342.69963 * 24 22 21 26 26 C 1.53151 * 109.54965 * 50.59482 * 25 24 22 27 27 C 1.50894 * 127.66101 * 180.21861 * 21 20 19 28 28 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 29 29 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 30 30 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 32 32 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 33 33 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 34 34 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 35 35 H 0.96998 * 119.99716 * 0.02562 * 18 16 14 36 36 H 1.07995 * 126.11919 * 359.96013 * 20 19 18 37 37 H 1.09001 * 109.58536 * 102.52263 * 24 22 21 38 38 H 1.08999 * 109.58073 * 222.93346 * 24 22 21 39 39 H 1.09001 * 109.46770 * 290.56513 * 25 24 22 40 40 H 1.08991 * 109.45045 * 170.61323 * 25 24 22 41 41 H 1.08997 * 109.51985 * 170.61463 * 26 25 24 42 42 H 1.08998 * 109.52012 * 50.43177 * 26 25 24 43 43 H 1.09000 * 109.72595 * 284.15897 * 27 21 20 44 44 H 1.08995 * 109.72135 * 44.81667 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8164 12 1 6.5576 2.0717 -0.6888 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3400 2.6319 0.4337 16 6 0.0400 3.3316 2.6432 17 8 0.8151 3.3638 3.5767 18 7 -1.1775 3.8982 2.7585 19 6 -1.5477 4.5238 3.9541 20 6 -0.7547 4.6295 5.1108 21 6 -1.4652 5.3026 6.0358 22 7 -2.6698 5.6073 5.4988 23 7 -2.6994 5.1102 4.1939 24 6 -3.7322 6.3345 6.2001 25 6 -3.4440 6.3003 7.7049 26 6 -2.0012 6.7461 7.9606 27 6 -1.0408 5.6704 7.4363 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8292 -0.0607 -2.9502 34 1 2.2720 2.1231 1.9978 35 1 -1.7971 3.8722 2.0126 36 1 0.2460 4.2425 5.2341 37 1 -3.7560 7.3684 5.8557 38 1 -4.6927 5.8590 6.0016 39 1 -3.5821 5.2856 8.0782 40 1 -4.1287 6.9731 8.2210 41 1 -1.8464 6.8822 9.0309 42 1 -1.8132 7.6861 7.4420 43 1 -1.0882 4.7907 8.0781 44 1 -0.0234 6.0613 7.4217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287571432.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:56 Heat of formation + Delta-G solvation = 4.134929 kcal Electronic energy + Delta-G solvation = -26627.850936 eV Core-core repulsion = 22774.832787 eV Total energy + Delta-G solvation = -3853.018149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.75300 -40.22757 -38.31154 -36.84062 -35.42381 -34.36539 -32.64547 -32.40711 -30.98835 -30.01704 -28.22583 -27.27471 -25.22006 -24.18060 -22.96412 -22.41580 -21.23535 -20.00959 -19.64072 -19.34326 -18.05823 -16.79045 -16.60665 -16.37875 -15.99433 -15.68217 -15.35053 -15.11458 -14.63117 -14.43339 -14.31696 -14.23393 -13.81368 -13.57536 -13.30434 -13.03380 -12.74109 -12.43132 -12.07145 -11.60738 -11.57100 -11.50872 -11.39236 -11.31267 -11.13849 -10.96720 -10.84238 -10.72890 -10.65331 -10.34351 -10.26100 -9.69448 -9.13390 -9.05798 -8.76680 -8.56516 -8.27880 -8.03192 -6.16886 -4.26547 1.44803 1.95943 1.97451 2.88072 2.89027 3.24326 3.31364 3.34424 3.75640 4.02069 4.04783 4.21860 4.30016 4.32654 4.45681 4.82267 4.90962 4.96186 5.08845 5.15543 5.21185 5.28555 5.33286 5.42820 5.53643 5.63059 5.69923 5.77315 6.11520 6.32832 6.37918 6.56551 6.73411 6.91652 6.95285 6.97861 7.10231 7.15654 7.28145 7.47799 7.62932 7.75417 7.81330 7.93202 8.08683 8.43777 8.61996 8.86082 9.40179 10.88513 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027119 B = 0.002487 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.227494 B =11255.529852 C =11946.745819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.666 5.666 14 C 0.499 3.501 15 O -0.526 6.526 16 C 0.516 3.484 17 O -0.499 6.499 18 N -0.614 5.614 19 C 0.301 3.699 20 C -0.261 4.261 21 C 0.090 3.910 22 N -0.366 5.366 23 N -0.319 5.319 24 C 0.138 3.862 25 C -0.136 4.136 26 C -0.127 4.127 27 C -0.058 4.058 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.104 0.896 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.402 0.598 35 H 0.427 0.573 36 H 0.174 0.826 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.874 10.791 19.512 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.315 5.315 14 C 0.277 3.723 15 O -0.405 6.405 16 C 0.298 3.702 17 O -0.371 6.371 18 N -0.264 5.264 19 C 0.046 3.954 20 C -0.291 4.291 21 C -0.037 4.037 22 N -0.152 5.152 23 N -0.149 5.149 24 C 0.017 3.983 25 C -0.174 4.174 26 C -0.164 4.164 27 C -0.097 4.097 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.122 0.878 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.265 0.735 36 H 0.191 0.809 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.014 11.002 18.829 25.396 hybrid contribution 1.543 -0.240 0.069 1.563 sum -11.471 10.763 18.898 24.588 Atomic orbital electron populations 1.21864 0.98282 0.98462 1.01078 1.21970 0.92665 0.99361 1.02801 1.19038 0.94811 0.89407 0.80053 0.92662 1.21202 0.90273 1.39415 1.06580 0.91722 1.24873 0.98822 0.94628 0.95237 1.69883 1.35260 1.37422 1.09331 0.86406 0.84550 0.78570 0.77372 1.20464 1.21056 1.19756 1.46446 1.13269 1.52468 1.19286 1.19419 0.84618 0.81531 0.86708 1.90757 1.51113 1.59301 1.39283 1.20979 0.80817 0.78629 0.89768 1.90649 1.50498 1.56120 1.39824 1.42360 1.17167 1.53469 1.13452 1.19173 0.92634 0.95801 0.87816 1.21444 1.04248 1.11611 0.91838 1.21047 0.86802 0.99081 0.96782 1.48170 1.12375 1.45469 1.09174 1.77308 1.19417 1.21926 0.96228 1.21748 0.89323 0.96304 0.90965 1.21960 0.98133 1.03559 0.93796 1.21681 0.93834 0.98773 1.02143 1.20460 1.00307 0.99557 0.89365 0.94603 0.92899 0.95452 0.87824 0.94617 0.92440 0.76317 0.73513 0.80922 0.90042 0.89095 0.90520 0.89036 0.90179 0.91088 0.89223 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.41 16 4 H 0.06 1.53 7.58 -51.93 -0.39 1.14 16 5 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.08 11.29 55.43 0.63 -23.45 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.67 -13.98 5.01 -55.40 -0.28 -14.25 16 14 C 0.50 9.90 6.45 -11.64 -0.08 9.83 16 15 O -0.53 -11.33 13.61 5.49 0.07 -11.26 16 16 C 0.52 9.09 7.85 -11.63 -0.09 9.00 16 17 O -0.50 -9.09 13.60 5.47 0.07 -9.02 16 18 N -0.61 -9.79 5.43 -11.50 -0.06 -9.85 16 19 C 0.30 4.78 8.11 -154.34 -1.25 3.53 16 20 C -0.26 -3.85 9.55 -39.94 -0.38 -4.23 16 21 C 0.09 1.05 6.58 -82.21 -0.54 0.51 16 22 N -0.37 -4.39 4.04 -56.93 -0.23 -4.62 16 23 N -0.32 -4.82 12.64 31.48 0.40 -4.42 16 24 C 0.14 1.02 7.27 -3.85 -0.03 0.99 16 25 C -0.14 -0.64 5.93 -26.52 -0.16 -0.80 16 26 C -0.13 -0.64 5.97 -26.43 -0.16 -0.79 16 27 C -0.06 -0.42 6.29 -27.56 -0.17 -0.60 16 28 H 0.03 0.74 5.64 -51.93 -0.29 0.45 16 29 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.40 7.87 8.01 -40.82 -0.33 7.54 16 35 H 0.43 6.32 8.29 -40.82 -0.34 5.98 16 36 H 0.17 2.67 5.92 -52.49 -0.31 2.36 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 40 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -30.73 357.37 -8.41 -39.14 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -6.15 Total: 11.56 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -3.24 Total: 5.43 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.45 Total: -56.60 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.15 Total: -20.28 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.73 -8.41 -39.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287571432.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.276 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds