Wall clock time and date at job start Fri Apr 10 2020 18:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47061 * 2 1 4 4 C 1.52992 * 113.41558 * 313.20450 * 3 2 1 5 5 C 1.53499 * 114.20477 * 180.02562 * 3 2 1 6 6 N 1.47066 * 87.98745 * 220.34910 * 5 3 2 7 7 C 1.34778 * 136.06123 * 207.08755 * 6 5 3 8 8 O 1.21361 * 119.99633 * 0.02562 * 7 6 5 9 9 C 1.49338 * 120.00273 * 179.97438 * 7 6 5 10 10 O 1.21389 * 119.99925 * 0.02562 * 9 7 6 11 11 N 1.34770 * 120.00038 * 179.97438 * 9 7 6 12 12 C 1.39936 * 119.99877 * 179.97438 * 11 9 7 13 13 C 1.40453 * 125.98062 * 359.97438 * 12 11 9 14 14 C 1.35215 * 107.86384 * 179.73491 * 13 12 11 15 15 N 1.34979 * 107.87970 * 0.42460 * 14 13 12 16 16 C 1.46500 * 125.97555 * 179.83561 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71172 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31273 * 125.97577 * 179.97438 * 12 11 9 26 26 C 1.47071 * 87.88163 * 27.34187 * 6 5 3 27 27 H 1.09003 * 109.46816 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46658 * 299.99178 * 1 2 3 29 29 H 1.08997 * 109.47003 * 59.99354 * 1 2 3 30 30 H 1.09004 * 109.46658 * 240.00821 * 2 1 3 31 31 H 1.08997 * 109.47745 * 120.00612 * 2 1 3 32 32 H 1.09005 * 109.47408 * 286.79655 * 4 3 2 33 33 H 1.08998 * 109.47386 * 46.80090 * 4 3 2 34 34 H 1.09008 * 109.47351 * 166.79655 * 4 3 2 35 35 H 1.08998 * 113.46467 * 105.56944 * 5 3 2 36 36 H 1.09002 * 113.46812 * 335.13219 * 5 3 2 37 37 H 0.96998 * 120.00451 * 0.02562 * 11 9 7 38 38 H 1.08000 * 126.07021 * 359.97438 * 13 12 11 39 39 H 1.08004 * 126.05929 * 180.25923 * 14 13 12 40 40 H 1.09004 * 109.47078 * 4.71934 * 16 15 14 41 41 H 1.08993 * 109.47364 * 244.71705 * 16 15 14 42 42 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 43 43 H 1.09000 * 113.46318 * 87.44196 * 26 6 5 44 44 H 1.08997 * 113.46684 * 217.87585 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3365 2.3361 -1.0233 5 6 3.5698 1.5692 -0.0006 6 7 3.4262 2.6811 0.9512 7 6 4.1361 3.7805 1.2734 8 8 5.1777 4.0203 0.6986 9 6 3.6404 4.7043 2.3369 10 8 2.5983 4.4647 2.9115 11 7 4.3505 5.8034 2.6594 12 6 3.8857 6.6693 3.6556 13 6 2.7019 6.5159 4.3958 14 6 2.6145 7.5536 5.2582 15 7 3.6938 8.3418 5.0689 16 6 3.9939 9.5788 5.7941 17 6 5.3640 9.4783 6.4136 18 1 5.9525 8.5826 6.2800 19 6 5.8662 10.5295 7.1508 20 7 5.1517 11.6223 7.3089 21 14 7.5648 10.4051 7.9180 22 1 7.8714 11.6614 8.6482 23 1 7.5977 9.2616 8.8649 24 1 8.5756 10.1935 6.8509 25 7 4.4798 7.7671 4.0619 26 6 2.1704 2.0618 1.4012 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8935 -0.5139 0.8899 32 1 1.6785 2.0793 -2.0260 33 1 0.2590 2.1855 -0.9573 34 1 1.5708 3.3803 -0.8159 35 1 3.9797 1.8726 -0.9639 36 1 4.0774 0.7009 0.4195 37 1 5.1834 5.9947 2.2006 38 1 1.9899 5.7099 4.2966 39 1 1.8204 7.7232 5.9704 40 1 3.2512 9.7300 6.5776 41 1 3.9687 10.4208 5.1024 42 1 4.2698 11.6871 6.9103 43 1 2.3093 1.3235 2.1910 44 1 1.3883 2.7850 1.6323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291601273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:59 Heat of formation + Delta-G solvation = 51.411475 kcal Electronic energy + Delta-G solvation = -26217.325078 eV Core-core repulsion = 22366.356993 eV Total energy + Delta-G solvation = -3850.968084 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45362 -40.74883 -39.53554 -38.10177 -35.15672 -34.21790 -33.67523 -30.98780 -30.08596 -29.49690 -28.17707 -26.66074 -26.45887 -25.03695 -23.64754 -22.73011 -21.14874 -20.20736 -19.49438 -18.93903 -17.94454 -17.23506 -17.09699 -16.56049 -16.50262 -15.63776 -15.42700 -15.11732 -14.92025 -14.53791 -14.30980 -13.80749 -13.72556 -13.69595 -13.44383 -13.25701 -12.75246 -12.53851 -12.40824 -12.33491 -12.18365 -12.11252 -11.96526 -11.58710 -11.21783 -11.20945 -11.08205 -10.84720 -10.64897 -10.57995 -10.16697 -10.07946 -9.53963 -9.18440 -9.04320 -8.60165 -8.31945 -7.64819 -6.60391 -4.34654 1.17336 1.84557 2.57051 2.92956 2.97541 3.37404 3.39681 3.56172 3.59039 3.59923 3.70037 4.21535 4.31616 4.37045 4.40087 4.53547 4.82711 4.93632 5.06413 5.10539 5.13225 5.14653 5.18749 5.32082 5.39103 5.42091 5.47024 5.50792 5.61342 5.61472 5.66864 5.77462 5.97173 6.01080 6.25269 6.32919 6.50113 6.69583 7.10311 7.16325 7.19370 7.51473 7.66177 7.75301 7.91632 8.30928 8.43800 8.58380 9.33392 10.77340 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029641 B = 0.002257 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.424547 B =12404.979643 C =12893.791067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 C -0.102 4.102 4 C -0.130 4.130 5 C 0.113 3.887 6 N -0.619 5.619 7 C 0.543 3.457 8 O -0.517 6.517 9 C 0.517 3.483 10 O -0.495 6.495 11 N -0.600 5.600 12 C 0.254 3.746 13 C -0.283 4.283 14 C 0.053 3.947 15 N -0.313 5.313 16 C 0.248 3.752 17 C -0.609 4.609 18 H 0.064 0.936 19 C 0.023 3.977 20 N -0.904 5.904 21 Si 1.077 2.923 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.285 1.285 25 N -0.292 5.292 26 C 0.112 3.888 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.423 0.577 38 H 0.162 0.838 39 H 0.170 0.830 40 H 0.048 0.952 41 H 0.036 0.964 42 H 0.267 0.733 43 H 0.091 0.909 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.225 -23.279 -15.003 29.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 C -0.103 4.103 4 C -0.187 4.187 5 C -0.009 4.009 6 N -0.355 5.355 7 C 0.327 3.673 8 O -0.392 6.392 9 C 0.297 3.703 10 O -0.368 6.368 11 N -0.248 5.248 12 C 0.001 3.999 13 C -0.314 4.314 14 C -0.097 4.097 15 N -0.095 5.095 16 C 0.130 3.870 17 C -0.647 4.647 18 H 0.082 0.918 19 C -0.181 4.181 20 N -0.539 5.539 21 Si 0.904 3.096 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.211 1.211 25 N -0.123 5.123 26 C -0.010 4.010 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.261 0.739 38 H 0.180 0.820 39 H 0.188 0.812 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.140 -21.391 -14.006 26.833 hybrid contribution -1.269 -1.191 -0.901 1.960 sum -9.409 -22.583 -14.907 28.648 Atomic orbital electron populations 1.21842 0.95202 1.01804 1.02405 1.21372 0.96570 0.93592 1.02649 1.22367 0.94746 0.96799 0.96347 1.21605 1.00689 0.98875 0.97493 1.23263 0.96008 0.87909 0.93677 1.49143 1.25442 1.21230 1.39674 1.19398 0.83288 0.81310 0.83298 1.90799 1.22259 1.73488 1.52698 1.19810 0.84667 0.81746 0.84063 1.90681 1.22168 1.72521 1.51449 1.41999 1.25903 1.21285 1.35660 1.19007 0.95036 0.92547 0.93330 1.21515 1.01602 1.04634 1.03680 1.22578 0.93462 0.92769 1.00892 1.48871 1.14300 1.20121 1.26200 1.19810 0.99094 0.77695 0.90374 1.22096 1.00969 1.05641 1.36023 0.91800 1.25933 1.05301 0.91790 0.95126 1.70857 1.12400 1.27574 1.43062 0.83417 0.73831 0.76067 0.76326 1.20501 1.21219 1.21080 1.77437 1.18044 1.09262 1.07567 1.23394 0.85500 0.96069 0.96053 0.92622 0.92330 0.92108 0.91170 0.91239 0.91844 0.91069 0.92215 0.89849 0.89072 0.73939 0.82040 0.81245 0.93462 0.94600 0.92285 0.89088 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.61 9.27 37.16 0.34 -0.27 16 2 C -0.10 -0.41 5.59 -26.73 -0.15 -0.56 16 3 C -0.10 -0.59 1.19 -153.86 -0.18 -0.77 16 4 C -0.13 -0.77 8.91 37.15 0.33 -0.44 16 5 C 0.11 0.82 7.77 -8.51 -0.07 0.76 16 6 N -0.62 -6.55 3.49 -185.56 -0.65 -7.20 16 7 C 0.54 7.53 8.13 -11.64 -0.09 7.43 16 8 O -0.52 -8.22 17.25 5.49 0.09 -8.13 16 9 C 0.52 8.00 7.85 -11.64 -0.09 7.91 16 10 O -0.50 -7.99 12.32 5.46 0.07 -7.92 16 11 N -0.60 -10.23 5.43 -11.58 -0.06 -10.29 16 12 C 0.25 5.17 8.10 -154.55 -1.25 3.92 16 13 C -0.28 -5.45 9.60 -39.82 -0.38 -5.83 16 14 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 15 N -0.31 -7.27 3.67 -62.56 -0.23 -7.50 16 16 C 0.25 6.24 5.57 -5.19 -0.03 6.22 16 17 C -0.61 -17.14 9.24 -34.44 -0.32 -17.46 16 18 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 19 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 20 N -0.90 -26.27 13.65 55.43 0.76 -25.51 16 21 Si 1.08 25.05 29.90 -169.99 -5.08 19.97 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 N -0.29 -6.85 12.42 31.41 0.39 -6.46 16 26 C 0.11 0.89 6.74 -8.37 -0.06 0.84 16 27 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.23 6.36 -51.93 -0.33 -0.10 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.25 7.89 -51.93 -0.41 -0.16 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.36 5.97 -51.93 -0.31 0.05 16 34 H 0.06 0.48 7.93 -51.92 -0.41 0.06 16 35 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.42 6.70 8.29 -40.82 -0.34 6.36 16 38 H 0.16 2.90 5.91 -52.49 -0.31 2.59 16 39 H 0.17 2.64 8.06 -52.48 -0.42 2.22 16 40 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 41 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 42 H 0.27 7.57 7.22 -40.82 -0.29 7.27 16 43 H 0.09 0.62 7.93 -51.93 -0.41 0.21 16 44 H 0.09 0.85 7.36 -51.93 -0.38 0.47 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -33.54 369.77 -7.57 -41.11 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.19 Total: 3.24 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.24 Total: 3.13 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.21 Total: -56.97 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.16 Total: -16.05 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.54 -7.57 -41.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291601273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.520 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds