Wall clock time and date at job start Fri Apr 10 2020 18:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47061 * 2 1 4 4 C 1.52992 * 113.41558 * 313.20450 * 3 2 1 5 5 C 1.53499 * 114.20477 * 180.02562 * 3 2 1 6 6 N 1.47066 * 87.98745 * 220.34910 * 5 3 2 7 7 C 1.34778 * 136.06123 * 207.08755 * 6 5 3 8 8 O 1.21361 * 119.99633 * 0.02562 * 7 6 5 9 9 C 1.49338 * 120.00273 * 179.97438 * 7 6 5 10 10 O 1.21389 * 119.99925 * 0.02562 * 9 7 6 11 11 N 1.34770 * 120.00038 * 179.97438 * 9 7 6 12 12 C 1.39936 * 119.99877 * 179.97438 * 11 9 7 13 13 C 1.40453 * 125.98062 * 359.97438 * 12 11 9 14 14 C 1.35215 * 107.86384 * 179.73491 * 13 12 11 15 15 N 1.34979 * 107.87970 * 0.42460 * 14 13 12 16 16 C 1.46500 * 125.97555 * 179.83561 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71172 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31273 * 125.97577 * 179.97438 * 12 11 9 26 26 C 1.47071 * 87.88163 * 27.34187 * 6 5 3 27 27 H 1.09003 * 109.46816 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46658 * 299.99178 * 1 2 3 29 29 H 1.08997 * 109.47003 * 59.99354 * 1 2 3 30 30 H 1.09004 * 109.46658 * 240.00821 * 2 1 3 31 31 H 1.08997 * 109.47745 * 120.00612 * 2 1 3 32 32 H 1.09005 * 109.47408 * 286.79655 * 4 3 2 33 33 H 1.08998 * 109.47386 * 46.80090 * 4 3 2 34 34 H 1.09008 * 109.47351 * 166.79655 * 4 3 2 35 35 H 1.08998 * 113.46467 * 105.56944 * 5 3 2 36 36 H 1.09002 * 113.46812 * 335.13219 * 5 3 2 37 37 H 0.96998 * 120.00451 * 0.02562 * 11 9 7 38 38 H 1.08000 * 126.07021 * 359.97438 * 13 12 11 39 39 H 1.08004 * 126.05929 * 180.25923 * 14 13 12 40 40 H 1.09004 * 109.47078 * 4.71934 * 16 15 14 41 41 H 1.08993 * 109.47364 * 244.71705 * 16 15 14 42 42 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 43 43 H 1.09000 * 113.46318 * 87.44196 * 26 6 5 44 44 H 1.08997 * 113.46684 * 217.87585 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3365 2.3361 -1.0233 5 6 3.5698 1.5692 -0.0006 6 7 3.4262 2.6811 0.9512 7 6 4.1361 3.7805 1.2734 8 8 5.1777 4.0203 0.6986 9 6 3.6404 4.7043 2.3369 10 8 2.5983 4.4647 2.9115 11 7 4.3505 5.8034 2.6594 12 6 3.8857 6.6693 3.6556 13 6 2.7019 6.5159 4.3958 14 6 2.6145 7.5536 5.2582 15 7 3.6938 8.3418 5.0689 16 6 3.9939 9.5788 5.7941 17 6 5.3640 9.4783 6.4136 18 1 5.9525 8.5826 6.2800 19 6 5.8662 10.5295 7.1508 20 7 5.1517 11.6223 7.3089 21 14 7.5648 10.4051 7.9180 22 1 7.8714 11.6614 8.6482 23 1 7.5977 9.2616 8.8649 24 1 8.5756 10.1935 6.8509 25 7 4.4798 7.7671 4.0619 26 6 2.1704 2.0618 1.4012 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8935 -0.5139 0.8899 32 1 1.6785 2.0793 -2.0260 33 1 0.2590 2.1855 -0.9573 34 1 1.5708 3.3803 -0.8159 35 1 3.9797 1.8726 -0.9639 36 1 4.0774 0.7009 0.4195 37 1 5.1834 5.9947 2.2006 38 1 1.9899 5.7099 4.2966 39 1 1.8204 7.7232 5.9704 40 1 3.2512 9.7300 6.5776 41 1 3.9687 10.4208 5.1024 42 1 4.2698 11.6871 6.9103 43 1 2.3093 1.3235 2.1910 44 1 1.3883 2.7850 1.6323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291601273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:58 Heat of formation + Delta-G solvation = 29.691355 kcal Electronic energy + Delta-G solvation = -26218.266933 eV Core-core repulsion = 22366.356993 eV Total energy + Delta-G solvation = -3851.909939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.60473 -42.00012 -40.69562 -39.22288 -36.64415 -35.66370 -34.77163 -32.78884 -31.12794 -30.71377 -28.95019 -28.29396 -27.18597 -26.20080 -24.95097 -24.02122 -22.61127 -21.66812 -20.69454 -19.52413 -19.28347 -19.00010 -18.37412 -17.87152 -17.48445 -16.89477 -16.51022 -16.41737 -15.90328 -15.63118 -15.46569 -15.33419 -15.13997 -14.82763 -14.28132 -14.19696 -14.03672 -13.99440 -13.80153 -13.29271 -13.25289 -12.92113 -12.81926 -12.65458 -12.63591 -12.48433 -12.18909 -11.96891 -11.76294 -11.60350 -11.54736 -11.19578 -11.05369 -10.71964 -10.69089 -10.02477 -9.94394 -9.33495 -8.80414 -6.57753 -0.03494 0.68652 1.01439 1.49861 1.56119 1.61351 1.64929 1.78176 2.16232 2.30209 2.47108 2.98029 2.99344 3.14412 3.75360 3.77386 3.85621 4.06364 4.10036 4.24352 4.46913 4.49703 4.50948 4.58306 4.59779 4.67238 4.70897 4.73520 4.75157 4.81473 4.90797 4.92099 4.98037 5.14894 5.25855 5.30119 5.42632 5.50790 5.61314 5.65175 5.80638 5.87942 6.22803 6.23082 6.35395 6.39025 6.69290 6.83150 7.17168 8.56850 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029641 B = 0.002257 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.424547 B =12404.979643 C =12893.791067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.098 4.098 3 C -0.083 4.083 4 C -0.131 4.131 5 C 0.108 3.892 6 N -0.618 5.618 7 C 0.543 3.457 8 O -0.546 6.546 9 C 0.520 3.480 10 O -0.500 6.500 11 N -0.603 5.603 12 C 0.261 3.739 13 C -0.284 4.284 14 C 0.061 3.939 15 N -0.339 5.339 16 C 0.258 3.742 17 C -0.623 4.623 18 H 0.044 0.956 19 C -0.018 4.018 20 N -0.921 5.921 21 Si 1.119 2.881 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.278 1.278 25 N -0.342 5.342 26 C 0.104 3.896 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.427 0.573 38 H 0.178 0.822 39 H 0.209 0.791 40 H 0.059 0.941 41 H 0.018 0.982 42 H 0.261 0.739 43 H 0.109 0.891 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.003 -25.913 -15.321 32.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.136 4.136 3 C -0.084 4.084 4 C -0.188 4.188 5 C -0.012 4.012 6 N -0.352 5.352 7 C 0.326 3.674 8 O -0.424 6.424 9 C 0.301 3.699 10 O -0.373 6.373 11 N -0.253 5.253 12 C 0.007 3.993 13 C -0.315 4.315 14 C -0.087 4.087 15 N -0.121 5.121 16 C 0.139 3.861 17 C -0.661 4.661 18 H 0.062 0.938 19 C -0.218 4.218 20 N -0.557 5.557 21 Si 0.940 3.060 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.203 1.203 25 N -0.173 5.173 26 C -0.017 4.017 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.132 0.868 37 H 0.265 0.735 38 H 0.195 0.805 39 H 0.226 0.774 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.127 0.873 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.980 -24.092 -14.353 29.446 hybrid contribution -1.175 -0.532 -0.910 1.578 sum -10.155 -24.624 -15.262 30.698 Atomic orbital electron populations 1.21855 0.95146 1.02212 1.02185 1.21367 0.96498 0.91895 1.03804 1.22280 0.93635 0.97917 0.94518 1.21632 1.01536 0.97451 0.98173 1.23618 0.97373 0.87145 0.93087 1.49392 1.25576 1.20598 1.39614 1.19003 0.83333 0.82103 0.82958 1.90785 1.23503 1.74428 1.53733 1.20254 0.84243 0.81292 0.84115 1.90653 1.22337 1.72588 1.51721 1.42134 1.26410 1.21436 1.35278 1.19328 0.94948 0.91856 0.93171 1.21755 1.01414 1.04963 1.03345 1.23269 0.92938 0.91614 1.00911 1.48652 1.15776 1.20481 1.27155 1.19479 0.98110 0.78383 0.90124 1.22279 1.02351 1.05001 1.36466 0.93781 1.27247 1.08122 0.91218 0.95238 1.70948 1.12598 1.28231 1.43967 0.82889 0.70201 0.76771 0.76171 1.19873 1.19550 1.20342 1.77347 1.19820 1.11071 1.09031 1.23692 0.83932 0.96019 0.98073 0.91934 0.92912 0.92028 0.89839 0.90291 0.90753 0.89999 0.94616 0.89863 0.86767 0.73520 0.80478 0.77435 0.92281 0.96423 0.92892 0.87297 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 9.27 71.98 0.67 -0.14 16 2 C -0.10 -0.45 5.59 30.59 0.17 -0.28 16 3 C -0.08 -0.75 1.19 -51.76 -0.06 -0.82 16 4 C -0.13 -1.34 8.91 71.98 0.64 -0.70 16 5 C 0.11 1.32 7.77 83.18 0.65 1.97 16 6 N -0.62 -12.24 3.49 -859.35 -3.00 -15.24 16 7 C 0.54 14.84 8.13 87.23 0.71 15.55 16 8 O -0.55 -17.42 17.25 -3.28 -0.06 -17.48 16 9 C 0.52 15.95 7.85 87.24 0.69 16.63 16 10 O -0.50 -15.68 12.32 -3.37 -0.04 -15.72 16 11 N -0.60 -20.79 5.43 -308.90 -1.68 -22.47 16 12 C 0.26 10.70 8.10 133.40 1.08 11.78 16 13 C -0.28 -10.67 9.60 22.11 0.21 -10.46 16 14 C 0.06 2.31 11.43 83.51 0.95 3.27 16 15 N -0.34 -15.89 3.67 -351.84 -1.29 -17.18 16 16 C 0.26 13.24 5.57 85.64 0.48 13.71 16 17 C -0.62 -35.67 9.24 25.60 0.24 -35.43 16 18 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 19 C -0.02 -1.03 5.46 84.65 0.46 -0.57 16 20 N -0.92 -53.91 13.65 21.45 0.29 -53.62 16 21 Si 1.12 50.27 29.90 68.60 2.05 52.32 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 N -0.34 -16.39 12.42 -54.54 -0.68 -17.07 16 26 C 0.10 1.46 6.74 83.26 0.56 2.02 16 27 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.31 6.36 -2.39 -0.02 0.30 16 30 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.08 0.27 7.89 -2.39 -0.02 0.25 16 32 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.08 0.67 5.97 -2.39 -0.01 0.65 16 34 H 0.03 0.54 7.93 -2.38 -0.02 0.52 16 35 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 36 H 0.11 0.94 8.10 -2.39 -0.02 0.92 16 37 H 0.43 13.92 8.29 -92.71 -0.77 13.15 16 38 H 0.18 6.05 5.91 -2.91 -0.02 6.04 16 39 H 0.21 5.97 8.06 -2.91 -0.02 5.95 16 40 H 0.06 2.86 7.94 -2.39 -0.02 2.84 16 41 H 0.02 0.97 8.00 -2.39 -0.02 0.95 16 42 H 0.26 15.07 7.22 -92.71 -0.67 14.40 16 43 H 0.11 1.18 7.93 -2.39 -0.02 1.17 16 44 H 0.08 1.39 7.36 -2.39 -0.02 1.37 16 Total: -1.00 -73.07 369.77 3.41 -69.67 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.36 Total: 20.24 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 7.44 Total: 16.55 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -6.35 Total: -125.58 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.10 Total: -33.20 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.32 kcal Total: -73.07 3.41 -69.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291601273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.357 kcal (2) G-P(sol) polarization free energy of solvation -73.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds