Wall clock time and date at job start Fri Apr 10 2020 18:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99850 * 2 1 4 4 N 1.46500 * 109.46563 * 125.00582 * 3 2 1 5 5 C 1.46505 * 119.99675 * 274.94140 * 4 3 2 6 6 C 1.50700 * 109.47541 * 263.11799 * 5 4 3 7 7 H 1.08007 * 119.99518 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00321 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99711 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00012 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46632 * 90.00088 * 10 8 6 12 12 H 1.48502 * 109.47034 * 209.99993 * 10 8 6 13 13 H 1.48496 * 109.47291 * 330.00343 * 10 8 6 14 14 C 1.34777 * 120.00576 * 94.94708 * 4 3 2 15 15 O 1.21367 * 119.99569 * 3.68817 * 14 4 3 16 16 C 1.49325 * 120.00324 * 183.68392 * 14 4 3 17 17 O 1.21396 * 120.00086 * 354.26705 * 16 14 4 18 18 N 1.34778 * 119.99817 * 174.26190 * 16 14 4 19 19 C 1.40478 * 119.99775 * 180.02562 * 18 16 14 20 20 C 1.35857 * 126.11674 * 0.03073 * 19 18 16 21 21 N 1.35225 * 107.64290 * 179.97438 * 20 19 18 22 22 C 1.46497 * 125.99442 * 179.97438 * 21 20 19 23 23 N 1.40052 * 108.01228 * 0.23779 * 21 20 19 24 24 C 1.30823 * 108.36504 * 359.59463 * 23 21 20 25 25 C 1.50706 * 125.89612 * 180.12542 * 24 23 21 26 26 C 1.53000 * 109.47148 * 270.32656 * 25 24 23 27 27 H 1.08008 * 119.99755 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99900 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99834 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47055 * 5.00799 * 3 2 1 31 31 H 1.09001 * 109.47010 * 245.00160 * 3 2 1 32 32 H 1.08993 * 109.47375 * 23.12175 * 5 4 3 33 33 H 1.09010 * 109.46850 * 143.11660 * 5 4 3 34 34 H 0.96996 * 119.99860 * 179.97438 * 9 8 6 35 35 H 0.96998 * 119.99931 * 0.02562 * 18 16 14 36 36 H 1.08000 * 126.17460 * 359.97438 * 20 19 18 37 37 H 1.09007 * 109.47008 * 89.99657 * 22 21 20 38 38 H 1.08994 * 109.47761 * 209.99996 * 22 21 20 39 39 H 1.09006 * 109.47145 * 330.00487 * 22 21 20 40 40 H 1.09003 * 109.47138 * 30.32425 * 25 24 23 41 41 H 1.08998 * 109.47196 * 150.32182 * 25 24 23 42 42 H 1.09003 * 109.46912 * 299.99907 * 26 25 24 43 43 H 1.09005 * 109.47144 * 59.99487 * 26 25 24 44 44 H 1.08999 * 109.47288 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5288 1.7631 2.4520 6 6 2.8690 3.2172 2.6543 7 1 3.3801 3.7654 1.8766 8 6 2.5278 3.8477 3.8320 9 7 1.9050 3.1803 4.7787 10 14 2.9501 5.6500 4.0829 11 1 1.8289 6.4934 3.5962 12 1 3.1738 5.9094 5.5279 13 1 4.1832 5.9797 3.3240 14 6 4.2775 0.9596 0.9574 15 8 4.6795 0.6667 -0.1496 16 6 5.2050 0.9079 2.1265 17 8 4.8335 1.2996 3.2138 18 7 6.4545 0.4262 1.9746 19 6 7.3269 0.3770 3.0746 20 6 7.0425 0.7791 4.3407 21 7 8.1439 0.5657 5.0956 22 6 8.2780 0.8580 6.5249 23 7 9.1360 0.0219 4.2701 24 6 8.6477 -0.0969 3.0623 25 6 9.3796 -0.6423 1.8630 26 6 10.1001 0.4991 1.1427 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6213 1.4027 -0.9314 32 1 1.4491 1.6299 2.5184 33 1 3.0167 1.1653 3.2221 34 1 1.6653 3.6237 5.6073 35 1 6.7514 0.1135 1.1057 36 1 6.1059 1.1943 4.6825 37 1 7.9742 -0.0140 7.1041 38 1 9.3165 1.1002 6.7504 39 1 7.6429 1.7053 6.7836 40 1 10.1088 -1.3841 2.1888 41 1 8.6664 -1.1083 1.1831 42 1 9.3709 1.2409 0.8170 43 1 10.8134 0.9650 1.8228 44 1 10.6291 0.1047 0.2751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293232434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:08 Heat of formation + Delta-G solvation = 46.805433 kcal Electronic energy + Delta-G solvation = -27502.082734 eV Core-core repulsion = 23650.914917 eV Total energy + Delta-G solvation = -3851.167817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31866 -39.93276 -37.89320 -35.92816 -35.01034 -33.85368 -33.17555 -32.06766 -31.52506 -29.20190 -27.55016 -26.80951 -26.03897 -23.84157 -23.25877 -22.51813 -21.14417 -19.79255 -19.72256 -18.65751 -17.45647 -16.67220 -16.45772 -16.08315 -15.53960 -15.31583 -15.01545 -14.92502 -14.53074 -14.41241 -14.16531 -13.92749 -13.76471 -13.18890 -12.95089 -12.75819 -12.68546 -12.56175 -12.28295 -12.00437 -11.63974 -11.50806 -11.44478 -11.20633 -11.14049 -10.90340 -10.86275 -10.59041 -10.47709 -10.34718 -10.00604 -9.69170 -9.21941 -9.08020 -8.69815 -8.26475 -7.88120 -7.41678 -6.04501 -4.06783 1.94360 2.09243 2.39132 2.57287 2.98435 3.16271 3.28107 3.34671 3.39552 3.97336 4.20166 4.43357 4.58765 4.82205 5.01101 5.05142 5.20823 5.26918 5.29464 5.31652 5.34083 5.44527 5.45413 5.51570 5.75316 5.80065 5.83847 5.92343 6.09020 6.12901 6.15821 6.23608 6.34478 6.62553 6.84576 6.87988 6.99194 7.25021 7.38917 7.46081 7.60727 7.85251 7.86762 8.10074 8.19366 8.41246 8.68951 8.95409 9.55842 11.04127 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009830 B = 0.004939 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.838009 B = 5667.518510 C = 7535.285156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.159 4.159 3 C 0.138 3.862 4 N -0.555 5.555 5 C 0.223 3.777 6 C -0.516 4.516 7 H 0.054 0.946 8 C 0.070 3.930 9 N -0.890 5.890 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.511 3.489 15 O -0.561 6.561 16 C 0.491 3.509 17 O -0.451 6.451 18 N -0.625 5.625 19 C -0.002 4.002 20 C 0.047 3.953 21 N -0.376 5.376 22 C 0.109 3.891 23 N -0.291 5.291 24 C 0.063 3.937 25 C -0.042 4.042 26 C -0.146 4.146 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.261 0.739 35 H 0.415 0.585 36 H 0.205 0.795 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.025 -7.266 -3.152 12.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.179 4.179 3 C 0.015 3.985 4 N -0.285 5.285 5 C 0.105 3.895 6 C -0.555 4.555 7 H 0.072 0.928 8 C -0.133 4.133 9 N -0.529 5.529 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.294 3.706 15 O -0.443 6.443 16 C 0.273 3.727 17 O -0.321 6.321 18 N -0.273 5.273 19 C -0.106 4.106 20 C -0.100 4.100 21 N -0.161 5.161 22 C -0.033 4.033 23 N -0.114 5.114 24 C -0.105 4.105 25 C -0.081 4.081 26 C -0.204 4.204 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.251 0.749 36 H 0.222 0.778 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.786 -7.203 -1.817 12.286 hybrid contribution -0.516 1.113 -0.480 1.317 sum 9.270 -6.090 -2.297 11.327 Atomic orbital electron populations 1.23801 0.95726 1.01754 1.01014 1.23299 0.96154 0.98931 0.99474 1.20604 0.92220 0.95288 0.90389 1.48255 1.07245 1.59613 1.13347 1.20094 0.95917 0.96447 0.77090 1.21238 1.38180 0.94662 1.01407 0.92811 1.24785 0.95030 0.97868 0.95586 1.69923 1.40308 1.36205 1.06449 0.86610 0.78757 0.85391 0.77301 1.20730 1.21197 1.20056 1.19694 0.83668 0.79221 0.88026 1.90651 1.76580 1.51547 1.25498 1.20275 0.82417 0.79875 0.90173 1.90773 1.73097 1.41916 1.26293 1.42555 1.11288 1.62494 1.10964 1.17546 0.91574 1.12783 0.88701 1.23168 0.93812 1.02486 0.90498 1.48108 1.09292 1.49862 1.08802 1.21811 1.04159 1.02155 0.75143 1.77118 1.13329 1.20113 1.00831 1.22062 0.92120 1.01877 0.94440 1.19921 0.98671 0.98061 0.91454 1.21731 1.00511 0.98222 0.99979 0.88301 0.88697 0.87698 0.89441 0.89381 0.95021 0.90666 0.92910 0.74873 0.77844 0.90879 0.89615 0.89175 0.90174 0.90188 0.92250 0.92440 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 14.32 29.01 0.42 -2.12 16 2 C -0.16 -2.49 9.84 -36.03 -0.35 -2.85 16 3 C 0.14 2.44 5.90 -5.19 -0.03 2.41 16 4 N -0.56 -11.68 2.46 -176.98 -0.44 -12.11 16 5 C 0.22 5.45 4.79 -5.19 -0.02 5.43 16 6 C -0.52 -13.82 8.31 -34.44 -0.29 -14.11 16 7 H 0.05 1.47 7.81 -52.48 -0.41 1.06 16 8 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 9 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 10 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.51 10.56 7.67 -11.64 -0.09 10.47 16 15 O -0.56 -11.49 15.98 5.48 0.09 -11.40 16 16 C 0.49 9.90 7.73 -11.64 -0.09 9.81 16 17 O -0.45 -10.26 9.52 5.46 0.05 -10.21 16 18 N -0.62 -10.56 5.45 -10.48 -0.06 -10.61 16 19 C 0.00 -0.03 6.90 -83.96 -0.58 -0.61 16 20 C 0.05 0.81 10.35 -16.91 -0.18 0.64 16 21 N -0.38 -5.70 4.02 -67.94 -0.27 -5.97 16 22 C 0.11 1.15 11.47 59.85 0.69 1.83 16 23 N -0.29 -4.56 12.56 33.76 0.42 -4.14 16 24 C 0.06 0.94 6.49 -82.23 -0.53 0.41 16 25 C -0.04 -0.46 6.35 -27.88 -0.18 -0.64 16 26 C -0.15 -1.49 9.89 37.16 0.37 -1.12 16 27 H 0.10 1.31 7.84 -52.48 -0.41 0.90 16 28 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.09 1.53 7.76 -51.93 -0.40 1.12 16 31 H 0.09 1.52 7.24 -51.93 -0.38 1.14 16 32 H 0.03 0.81 8.02 -51.93 -0.42 0.39 16 33 H 0.08 1.99 5.41 -51.92 -0.28 1.70 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.41 6.12 7.70 -40.82 -0.31 5.80 16 36 H 0.21 3.86 5.84 -52.49 -0.31 3.56 16 37 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.78 7.70 -51.93 -0.40 0.38 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -31.77 376.34 -6.04 -37.82 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.26 Total: 7.77 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -0.97 Total: 11.34 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.39 Total: -57.26 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.14 Total: -21.61 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.77 -6.04 -37.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293232434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.622 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds