Wall clock time and date at job start Fri Apr 10 2020 18:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99850 * 2 1 4 4 N 1.46500 * 109.46563 * 125.00582 * 3 2 1 5 5 C 1.46505 * 119.99675 * 274.94140 * 4 3 2 6 6 C 1.50700 * 109.47541 * 263.11799 * 5 4 3 7 7 H 1.08007 * 119.99518 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00321 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99711 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00012 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46632 * 90.00088 * 10 8 6 12 12 H 1.48502 * 109.47034 * 209.99993 * 10 8 6 13 13 H 1.48496 * 109.47291 * 330.00343 * 10 8 6 14 14 C 1.34777 * 120.00576 * 94.94708 * 4 3 2 15 15 O 1.21367 * 119.99569 * 3.68817 * 14 4 3 16 16 C 1.49325 * 120.00324 * 183.68392 * 14 4 3 17 17 O 1.21396 * 120.00086 * 354.26705 * 16 14 4 18 18 N 1.34778 * 119.99817 * 174.26190 * 16 14 4 19 19 C 1.40478 * 119.99775 * 180.02562 * 18 16 14 20 20 C 1.35857 * 126.11674 * 0.03073 * 19 18 16 21 21 N 1.35225 * 107.64290 * 179.97438 * 20 19 18 22 22 C 1.46497 * 125.99442 * 179.97438 * 21 20 19 23 23 N 1.40052 * 108.01228 * 0.23779 * 21 20 19 24 24 C 1.30823 * 108.36504 * 359.59463 * 23 21 20 25 25 C 1.50706 * 125.89612 * 180.12542 * 24 23 21 26 26 C 1.53000 * 109.47148 * 270.32656 * 25 24 23 27 27 H 1.08008 * 119.99755 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99900 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99834 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47055 * 5.00799 * 3 2 1 31 31 H 1.09001 * 109.47010 * 245.00160 * 3 2 1 32 32 H 1.08993 * 109.47375 * 23.12175 * 5 4 3 33 33 H 1.09010 * 109.46850 * 143.11660 * 5 4 3 34 34 H 0.96996 * 119.99860 * 179.97438 * 9 8 6 35 35 H 0.96998 * 119.99931 * 0.02562 * 18 16 14 36 36 H 1.08000 * 126.17460 * 359.97438 * 20 19 18 37 37 H 1.09007 * 109.47008 * 89.99657 * 22 21 20 38 38 H 1.08994 * 109.47761 * 209.99996 * 22 21 20 39 39 H 1.09006 * 109.47145 * 330.00487 * 22 21 20 40 40 H 1.09003 * 109.47138 * 30.32425 * 25 24 23 41 41 H 1.08998 * 109.47196 * 150.32182 * 25 24 23 42 42 H 1.09003 * 109.46912 * 299.99907 * 26 25 24 43 43 H 1.09005 * 109.47144 * 59.99487 * 26 25 24 44 44 H 1.08999 * 109.47288 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5288 1.7631 2.4520 6 6 2.8690 3.2172 2.6543 7 1 3.3801 3.7654 1.8766 8 6 2.5278 3.8477 3.8320 9 7 1.9050 3.1803 4.7787 10 14 2.9501 5.6500 4.0829 11 1 1.8289 6.4934 3.5962 12 1 3.1738 5.9094 5.5279 13 1 4.1832 5.9797 3.3240 14 6 4.2775 0.9596 0.9574 15 8 4.6795 0.6667 -0.1496 16 6 5.2050 0.9079 2.1265 17 8 4.8335 1.2996 3.2138 18 7 6.4545 0.4262 1.9746 19 6 7.3269 0.3770 3.0746 20 6 7.0425 0.7791 4.3407 21 7 8.1439 0.5657 5.0956 22 6 8.2780 0.8580 6.5249 23 7 9.1360 0.0219 4.2701 24 6 8.6477 -0.0969 3.0623 25 6 9.3796 -0.6423 1.8630 26 6 10.1001 0.4991 1.1427 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6213 1.4027 -0.9314 32 1 1.4491 1.6299 2.5184 33 1 3.0167 1.1653 3.2221 34 1 1.6653 3.6237 5.6073 35 1 6.7514 0.1135 1.1057 36 1 6.1059 1.1943 4.6825 37 1 7.9742 -0.0140 7.1041 38 1 9.3165 1.1002 6.7504 39 1 7.6429 1.7053 6.7836 40 1 10.1088 -1.3841 2.1888 41 1 8.6664 -1.1083 1.1831 42 1 9.3709 1.2409 0.8170 43 1 10.8134 0.9650 1.8228 44 1 10.6291 0.1047 0.2751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293232434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:07 Heat of formation + Delta-G solvation = 26.771491 kcal Electronic energy + Delta-G solvation = -27502.951471 eV Core-core repulsion = 23650.914917 eV Total energy + Delta-G solvation = -3852.036554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.60696 -41.48422 -39.46087 -37.52608 -36.22602 -35.13906 -34.86424 -33.77157 -32.49777 -30.49833 -29.41258 -28.14092 -27.28740 -25.41944 -24.54890 -24.00528 -22.51069 -21.07733 -20.96960 -20.10144 -18.92433 -18.46865 -18.08322 -17.62977 -16.90453 -16.76434 -16.48717 -16.38636 -16.09589 -15.72370 -15.31825 -15.16997 -15.02757 -14.52850 -14.28020 -14.23940 -14.06108 -13.84409 -13.52532 -13.42892 -13.03639 -12.95797 -12.81228 -12.72239 -12.41170 -12.33082 -12.26899 -12.14214 -11.86297 -11.82309 -11.65975 -11.58445 -10.67158 -10.44077 -10.25427 -10.02749 -9.61020 -8.74883 -8.12566 -6.21164 0.38890 0.82272 1.10393 1.38615 1.40021 1.42853 1.49231 1.65161 1.82373 2.37019 2.44573 2.74531 3.20555 3.35502 3.59540 3.74061 4.04937 4.16081 4.19123 4.25794 4.40697 4.45784 4.48919 4.57061 4.60210 4.64802 4.71599 4.79121 4.86849 5.03740 5.05335 5.06888 5.19627 5.35289 5.42325 5.50023 5.68223 5.70153 5.78997 5.86042 6.02410 6.12769 6.18002 6.34268 6.62900 6.82048 6.86839 7.13871 7.44737 8.95348 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009830 B = 0.004939 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.838009 B = 5667.518510 C = 7535.285156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.183 4.183 3 C 0.135 3.865 4 N -0.561 5.561 5 C 0.243 3.757 6 C -0.522 4.522 7 H 0.042 0.958 8 C 0.026 3.974 9 N -0.918 5.918 10 Si 0.948 3.052 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.509 3.491 15 O -0.560 6.560 16 C 0.486 3.514 17 O -0.484 6.484 18 N -0.605 5.605 19 C -0.022 4.022 20 C 0.033 3.967 21 N -0.375 5.375 22 C 0.098 3.902 23 N -0.300 5.300 24 C 0.069 3.931 25 C -0.043 4.043 26 C -0.142 4.142 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.018 0.982 33 H 0.056 0.944 34 H 0.263 0.737 35 H 0.426 0.574 36 H 0.185 0.815 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.049 0.951 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.863 -7.589 -3.831 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C 0.014 3.986 4 N -0.290 5.290 5 C 0.123 3.877 6 C -0.561 4.561 7 H 0.061 0.939 8 C -0.174 4.174 9 N -0.558 5.558 10 Si 0.774 3.226 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.205 1.205 14 C 0.292 3.708 15 O -0.441 6.441 16 C 0.268 3.732 17 O -0.356 6.356 18 N -0.254 5.254 19 C -0.126 4.126 20 C -0.115 4.115 21 N -0.160 5.160 22 C -0.041 4.041 23 N -0.123 5.123 24 C -0.099 4.099 25 C -0.082 4.082 26 C -0.200 4.200 27 H 0.122 0.878 28 H 0.138 0.862 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.264 0.736 36 H 0.201 0.799 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.653 -7.542 -2.520 13.294 hybrid contribution -0.752 1.163 -0.272 1.412 sum 9.900 -6.379 -2.793 12.104 Atomic orbital electron populations 1.24062 0.95066 1.03192 0.97674 1.23152 0.96791 0.97785 1.02478 1.20758 0.91922 0.96697 0.89234 1.48209 1.07984 1.59720 1.13077 1.19595 0.94550 0.95111 0.78417 1.21393 1.37743 0.95746 1.01175 0.93926 1.25461 0.94998 1.01524 0.95393 1.70016 1.41219 1.37685 1.06839 0.85718 0.78467 0.81121 0.77251 1.19622 1.20685 1.20461 1.19805 0.83664 0.79089 0.88242 1.90637 1.76490 1.51586 1.25404 1.20291 0.83218 0.80046 0.89623 1.90775 1.73930 1.43787 1.27157 1.42363 1.10266 1.61077 1.11656 1.17779 0.92483 1.13923 0.88439 1.22970 0.93982 1.03100 0.91421 1.48467 1.08384 1.49085 1.10020 1.22166 1.05648 1.03276 0.73054 1.77100 1.13577 1.20415 1.01243 1.22588 0.91246 1.00788 0.95276 1.20128 0.99167 0.98625 0.90272 1.21705 1.00037 0.97596 1.00657 0.87811 0.86221 0.87616 0.89550 0.89036 0.96429 0.92604 0.92766 0.73598 0.79858 0.89243 0.87764 0.88482 0.88564 0.88733 0.93604 0.93160 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.16 14.32 67.78 0.97 -3.19 16 2 C -0.18 -5.58 9.84 25.64 0.25 -5.32 16 3 C 0.14 4.79 5.90 85.63 0.50 5.30 16 4 N -0.56 -23.95 2.46 -832.20 -2.05 -26.00 16 5 C 0.24 12.22 4.79 85.63 0.41 12.63 16 6 C -0.52 -28.47 8.31 25.60 0.21 -28.26 16 7 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16 8 C 0.03 1.42 5.46 84.66 0.46 1.89 16 9 N -0.92 -52.62 13.29 21.45 0.28 -52.34 16 10 Si 0.95 43.90 29.54 68.60 2.03 45.92 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 14 C 0.51 21.25 7.67 87.23 0.67 21.92 16 15 O -0.56 -22.68 15.98 -3.30 -0.05 -22.73 16 16 C 0.49 20.05 7.73 87.23 0.67 20.72 16 17 O -0.48 -22.90 9.52 -3.39 -0.03 -22.93 16 18 N -0.61 -20.49 5.45 -305.42 -1.67 -22.15 16 19 C -0.02 -0.74 6.90 37.71 0.26 -0.48 16 20 C 0.03 1.17 10.35 83.62 0.87 2.03 16 21 N -0.38 -11.23 4.02 -368.88 -1.48 -12.72 16 22 C 0.10 1.99 11.47 127.77 1.47 3.45 16 23 N -0.30 -9.09 12.56 -47.09 -0.59 -9.68 16 24 C 0.07 1.98 6.49 43.22 0.28 2.26 16 25 C -0.04 -0.86 6.35 29.85 0.19 -0.67 16 26 C -0.14 -2.61 9.89 71.98 0.71 -1.89 16 27 H 0.10 2.56 7.84 -2.91 -0.02 2.54 16 28 H 0.12 2.49 8.06 -2.91 -0.02 2.46 16 29 H 0.11 3.19 8.06 -2.91 -0.02 3.17 16 30 H 0.09 3.02 7.76 -2.39 -0.02 3.00 16 31 H 0.09 3.13 7.24 -2.39 -0.02 3.11 16 32 H 0.02 0.93 8.02 -2.39 -0.02 0.91 16 33 H 0.06 3.07 5.41 -2.39 -0.01 3.06 16 34 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.43 12.25 7.70 -92.71 -0.71 11.54 16 36 H 0.18 7.34 5.84 -2.91 -0.02 7.33 16 37 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.09 1.62 7.70 -2.39 -0.02 1.60 16 42 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -68.24 376.34 4.67 -63.56 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.30 Total: 28.67 kcal Atomic # 6 Polarization: 22.47 SS G_CDS: 7.93 Total: 30.39 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -5.50 Total: -122.88 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -0.09 Total: -45.67 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.24 4.67 -63.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293232434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.335 kcal (2) G-P(sol) polarization free energy of solvation -68.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds