Wall clock time and date at job start Fri Apr 10 2020 18:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47281 * 2 1 4 4 H 1.08998 * 110.63944 * 51.85829 * 3 2 1 5 5 C 1.55151 * 110.71852 * 288.51938 * 3 2 1 6 6 C 1.55132 * 101.48594 * 205.96847 * 5 3 2 7 7 N 1.47428 * 104.72110 * 37.29847 * 6 5 3 8 8 S 1.65597 * 125.65033 * 155.81684 * 7 6 5 9 9 O 1.42101 * 106.40170 * 150.01681 * 8 7 6 10 10 O 1.42109 * 106.40039 * 17.10162 * 8 7 6 11 11 N 1.65589 * 107.21834 * 263.56339 * 8 7 6 12 12 C 1.46504 * 120.00552 * 84.53981 * 11 8 7 13 13 C 1.50694 * 109.47378 * 265.00378 * 12 11 8 14 14 H 1.08000 * 119.99664 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00221 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99808 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00268 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46892 * 59.99984 * 17 15 13 19 19 H 1.48495 * 109.47472 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.47391 * 300.00457 * 17 15 13 21 21 C 1.46507 * 120.00119 * 264.53987 * 11 8 7 22 22 C 1.52995 * 109.46940 * 261.91646 * 21 11 8 23 23 O 1.42905 * 109.47471 * 65.60869 * 22 21 11 24 24 C 1.42901 * 114.00210 * 179.97438 * 23 22 21 25 25 C 1.47029 * 108.69905 * 335.55223 * 7 6 5 26 26 H 1.09007 * 109.46961 * 59.99947 * 1 2 3 27 27 H 1.08997 * 109.47722 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47325 * 300.00152 * 1 2 3 29 29 H 1.08994 * 109.47346 * 239.99674 * 2 1 3 30 30 H 1.09007 * 109.46961 * 120.00053 * 2 1 3 31 31 H 1.09001 * 111.00447 * 324.20912 * 5 3 2 32 32 H 1.09006 * 111.00665 * 88.06128 * 5 3 2 33 33 H 1.09001 * 110.49687 * 278.45538 * 6 5 3 34 34 H 1.09003 * 110.34287 * 156.05748 * 6 5 3 35 35 H 1.09005 * 109.46330 * 24.99768 * 12 11 8 36 36 H 1.08998 * 109.47355 * 144.99525 * 12 11 8 37 37 H 0.96997 * 119.99655 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.47168 * 141.91393 * 21 11 8 39 39 H 1.09002 * 109.46689 * 21.91434 * 21 11 8 40 40 H 1.08997 * 109.47480 * 305.60337 * 22 21 11 41 41 H 1.09005 * 109.47140 * 185.60488 * 22 21 11 42 42 H 1.09008 * 109.46766 * 299.99579 * 24 23 22 43 43 H 1.09004 * 109.47015 * 59.99488 * 24 23 22 44 44 H 1.08996 * 109.47072 * 179.97438 * 24 23 22 45 45 H 1.08996 * 109.88278 * 120.70863 * 25 7 6 46 46 H 1.09003 * 109.87784 * 241.86760 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5741 2.0147 0.8022 5 6 1.7884 2.1136 -1.3760 6 6 2.9044 3.1909 -1.4029 7 7 4.0638 2.5454 -0.7606 8 16 5.6503 2.9590 -0.9933 9 8 6.3264 2.6541 0.2188 10 8 5.6458 4.2551 -1.5759 11 7 6.2611 1.9328 -2.1405 12 6 6.0801 2.2331 -3.5629 13 6 4.8642 1.5076 -4.0788 14 1 4.2844 0.8848 -3.4137 15 6 4.4918 1.6390 -5.3998 16 7 5.1982 2.3970 -6.2098 17 14 2.9850 0.7392 -6.0394 18 1 1.7861 1.1817 -5.2831 19 1 2.8008 1.0446 -7.4809 20 1 3.1697 -0.7237 -5.8625 21 6 6.9825 0.7245 -1.7330 22 6 8.4888 0.9872 -1.7875 23 8 8.8370 1.9687 -0.8089 24 6 10.2295 2.2881 -0.7760 25 6 3.5777 1.4778 0.1259 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.9123 1.3976 -2.1885 32 1 0.8015 2.5751 -1.4111 33 1 2.5988 4.0712 -0.8375 34 1 3.1434 3.4633 -2.4310 35 1 5.9450 3.3068 -3.6932 36 1 6.9601 1.9076 -4.1178 37 1 4.9364 2.4890 -7.1393 38 1 6.7316 -0.0935 -2.4081 39 1 6.6970 0.4567 -0.7157 40 1 8.7586 1.3510 -2.7790 41 1 9.0267 0.0618 -1.5813 42 1 10.8031 1.3895 -0.5485 43 1 10.5357 2.6787 -1.7465 44 1 10.4117 3.0400 -0.0082 45 1 3.9970 0.5202 -0.1826 46 1 3.8605 1.6941 1.1561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330381568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:14 Heat of formation + Delta-G solvation = -129.571342 kcal Electronic energy + Delta-G solvation = -27594.960448 eV Core-core repulsion = 23839.295560 eV Total energy + Delta-G solvation = -3755.664888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.47529 -37.71444 -36.41605 -35.35522 -34.99168 -33.70141 -32.58056 -29.43964 -29.38430 -28.33049 -26.70362 -25.74997 -23.05891 -23.00625 -22.04000 -21.37090 -19.98276 -18.28897 -17.21210 -16.85349 -16.32557 -16.19744 -15.72439 -15.39589 -14.99888 -14.50647 -14.45308 -14.32716 -13.99147 -13.63658 -13.23181 -12.82950 -12.69222 -12.55663 -12.36830 -12.18993 -11.92995 -11.85776 -11.66976 -11.50304 -11.31191 -11.18075 -11.13597 -11.07231 -10.99559 -10.84339 -10.62121 -10.55896 -10.44252 -10.42982 -10.28573 -10.04356 -9.78268 -9.29278 -8.54472 -8.46069 -7.99322 -6.10959 -4.17371 1.40183 3.23699 3.30157 3.30380 3.65002 4.20238 4.28621 4.35917 4.60438 4.87165 4.90308 5.15932 5.22927 5.33028 5.41834 5.44207 5.48776 5.50056 5.59187 5.62204 5.65777 5.71369 5.73369 5.86844 5.88080 5.89163 5.94762 5.98988 6.09320 6.13416 6.19324 6.29709 6.31821 6.37823 6.54136 6.59736 6.69156 6.89258 7.37053 7.46565 7.53720 7.70632 7.87478 8.16735 8.88158 9.48309 10.96933 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009511 B = 0.006973 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.318306 B = 4014.808164 C = 5889.641816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.097 4.097 4 H 0.079 0.921 5 C -0.123 4.123 6 C 0.126 3.874 7 N -1.016 6.016 8 S 2.801 3.199 9 O -0.979 6.979 10 O -0.981 6.981 11 N -0.988 5.988 12 C 0.246 3.754 13 C -0.536 4.536 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.136 3.864 22 C 0.040 3.960 23 O -0.377 6.377 24 C 0.031 3.969 25 C 0.129 3.871 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.035 0.965 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.626 -4.778 10.833 12.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.117 4.117 4 H 0.098 0.902 5 C -0.162 4.162 6 C 0.000 4.000 7 N -0.854 5.854 8 S 2.810 3.190 9 O -0.963 6.963 10 O -0.965 6.965 11 N -0.828 5.828 12 C 0.124 3.876 13 C -0.575 4.575 14 H 0.081 0.919 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.719 3.281 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.203 1.203 21 C 0.009 3.991 22 C -0.039 4.039 23 O -0.295 6.295 24 C -0.066 4.066 25 C 0.003 3.997 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.173 -3.883 11.175 12.028 hybrid contribution -0.709 -0.976 -1.022 1.581 sum -2.882 -4.859 10.153 11.619 Atomic orbital electron populations 1.21757 0.95864 1.01326 1.01809 1.21531 0.95844 0.95687 1.02298 1.22271 0.94539 0.96563 0.98330 0.90242 1.22897 0.98046 0.98334 0.96956 1.21926 0.84953 0.94503 0.98622 1.59156 1.23363 1.46541 1.56357 1.01356 0.71332 0.73494 0.72780 1.93560 1.71989 1.85537 1.45243 1.93552 1.86354 1.37746 1.78848 1.57732 1.67203 1.36989 1.20853 1.19147 0.97186 0.97581 0.73665 1.21529 1.11406 1.29470 0.95110 0.91890 1.24951 0.96866 0.95265 0.96802 1.69929 1.39151 1.38173 1.05623 0.86672 0.83376 0.80097 0.77936 1.19971 1.21310 1.20312 1.21071 0.88793 0.88740 1.00479 1.23114 0.97294 0.91231 0.92214 1.88068 1.23536 1.60261 1.57648 1.22697 0.83066 0.99657 1.01154 1.21630 0.94244 0.90395 0.93449 0.92498 0.93014 0.92963 0.91370 0.91967 0.89996 0.90826 0.92507 0.89441 0.93408 0.94725 0.92589 0.88872 0.90642 0.92532 0.93126 0.94601 0.94380 0.90085 0.92086 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.80 37.16 0.36 -1.07 16 2 C -0.12 -1.25 5.29 -26.73 -0.14 -1.39 16 3 C -0.10 -1.20 2.92 -88.79 -0.26 -1.46 16 4 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.12 -1.74 5.94 -24.46 -0.15 -1.89 16 6 C 0.13 2.14 6.94 -2.41 -0.02 2.12 16 7 N -1.02 -18.45 3.75 -111.28 -0.42 -18.87 16 8 S 2.80 60.01 6.31 -107.50 -0.68 59.34 16 9 O -0.98 -21.55 15.40 -63.05 -0.97 -22.52 16 10 O -0.98 -24.25 16.33 -57.17 -0.93 -25.18 16 11 N -0.99 -20.94 2.79 -115.66 -0.32 -21.27 16 12 C 0.25 6.10 5.43 -5.19 -0.03 6.07 16 13 C -0.54 -13.64 9.38 -34.44 -0.32 -13.96 16 14 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 17 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.14 2.42 5.82 -4.04 -0.02 2.40 16 22 C 0.04 0.67 6.25 37.15 0.23 0.90 16 23 O -0.38 -6.94 9.52 -46.96 -0.45 -7.39 16 24 C 0.03 0.44 11.01 101.05 1.11 1.55 16 25 C 0.13 1.91 6.65 -3.06 -0.02 1.89 16 26 H 0.06 0.56 7.69 -51.92 -0.40 0.16 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.81 8.00 -51.93 -0.42 0.39 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.08 1.29 7.94 -51.93 -0.41 0.88 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.05 1.33 6.99 -51.93 -0.36 0.96 16 36 H 0.03 0.89 7.77 -51.93 -0.40 0.48 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 39 H 0.08 1.26 7.35 -51.93 -0.38 0.87 16 40 H 0.06 0.97 7.80 -51.93 -0.41 0.57 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.04 0.42 8.14 -51.92 -0.42 -0.01 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.06 0.88 7.82 -51.93 -0.41 0.47 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -32.17 382.46 -9.86 -42.03 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -8.23 Total: 0.52 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 0.65 Total: -3.25 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: 0.00 Total: -64.51 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -2.35 Total: -55.09 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 60.01 SS G_CDS: -0.68 Total: 59.34 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.17 -9.86 -42.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330381568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.538 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds