Wall clock time and date at job start Fri Apr 10 2020 18:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47281 * 2 1 4 4 H 1.08998 * 110.63944 * 51.85829 * 3 2 1 5 5 C 1.55151 * 110.71852 * 288.51938 * 3 2 1 6 6 C 1.55132 * 101.48594 * 205.96847 * 5 3 2 7 7 N 1.47428 * 104.72110 * 37.29847 * 6 5 3 8 8 S 1.65597 * 125.65033 * 155.81684 * 7 6 5 9 9 O 1.42101 * 106.40170 * 150.01681 * 8 7 6 10 10 O 1.42109 * 106.40039 * 17.10162 * 8 7 6 11 11 N 1.65589 * 107.21834 * 263.56339 * 8 7 6 12 12 C 1.46504 * 120.00552 * 84.53981 * 11 8 7 13 13 C 1.50694 * 109.47378 * 265.00378 * 12 11 8 14 14 H 1.08000 * 119.99664 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00221 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99808 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00268 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46892 * 59.99984 * 17 15 13 19 19 H 1.48495 * 109.47472 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.47391 * 300.00457 * 17 15 13 21 21 C 1.46507 * 120.00119 * 264.53987 * 11 8 7 22 22 C 1.52995 * 109.46940 * 261.91646 * 21 11 8 23 23 O 1.42905 * 109.47471 * 65.60869 * 22 21 11 24 24 C 1.42901 * 114.00210 * 179.97438 * 23 22 21 25 25 C 1.47029 * 108.69905 * 335.55223 * 7 6 5 26 26 H 1.09007 * 109.46961 * 59.99947 * 1 2 3 27 27 H 1.08997 * 109.47722 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47325 * 300.00152 * 1 2 3 29 29 H 1.08994 * 109.47346 * 239.99674 * 2 1 3 30 30 H 1.09007 * 109.46961 * 120.00053 * 2 1 3 31 31 H 1.09001 * 111.00447 * 324.20912 * 5 3 2 32 32 H 1.09006 * 111.00665 * 88.06128 * 5 3 2 33 33 H 1.09001 * 110.49687 * 278.45538 * 6 5 3 34 34 H 1.09003 * 110.34287 * 156.05748 * 6 5 3 35 35 H 1.09005 * 109.46330 * 24.99768 * 12 11 8 36 36 H 1.08998 * 109.47355 * 144.99525 * 12 11 8 37 37 H 0.96997 * 119.99655 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.47168 * 141.91393 * 21 11 8 39 39 H 1.09002 * 109.46689 * 21.91434 * 21 11 8 40 40 H 1.08997 * 109.47480 * 305.60337 * 22 21 11 41 41 H 1.09005 * 109.47140 * 185.60488 * 22 21 11 42 42 H 1.09008 * 109.46766 * 299.99579 * 24 23 22 43 43 H 1.09004 * 109.47015 * 59.99488 * 24 23 22 44 44 H 1.08996 * 109.47072 * 179.97438 * 24 23 22 45 45 H 1.08996 * 109.88278 * 120.70863 * 25 7 6 46 46 H 1.09003 * 109.87784 * 241.86760 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5741 2.0147 0.8022 5 6 1.7884 2.1136 -1.3760 6 6 2.9044 3.1909 -1.4029 7 7 4.0638 2.5454 -0.7606 8 16 5.6503 2.9590 -0.9933 9 8 6.3264 2.6541 0.2188 10 8 5.6458 4.2551 -1.5759 11 7 6.2611 1.9328 -2.1405 12 6 6.0801 2.2331 -3.5629 13 6 4.8642 1.5076 -4.0788 14 1 4.2844 0.8848 -3.4137 15 6 4.4918 1.6390 -5.3998 16 7 5.1982 2.3970 -6.2098 17 14 2.9850 0.7392 -6.0394 18 1 1.7861 1.1817 -5.2831 19 1 2.8008 1.0446 -7.4809 20 1 3.1697 -0.7237 -5.8625 21 6 6.9825 0.7245 -1.7330 22 6 8.4888 0.9872 -1.7875 23 8 8.8370 1.9687 -0.8089 24 6 10.2295 2.2881 -0.7760 25 6 3.5777 1.4778 0.1259 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.9123 1.3976 -2.1885 32 1 0.8015 2.5751 -1.4111 33 1 2.5988 4.0712 -0.8375 34 1 3.1434 3.4633 -2.4310 35 1 5.9450 3.3068 -3.6932 36 1 6.9601 1.9076 -4.1178 37 1 4.9364 2.4890 -7.1393 38 1 6.7316 -0.0935 -2.4081 39 1 6.6970 0.4567 -0.7157 40 1 8.7586 1.3510 -2.7790 41 1 9.0267 0.0618 -1.5813 42 1 10.8031 1.3895 -0.5485 43 1 10.5357 2.6787 -1.7465 44 1 10.4117 3.0400 -0.0082 45 1 3.9970 0.5202 -0.1826 46 1 3.8605 1.6941 1.1561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330381568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:14 Heat of formation + Delta-G solvation = -151.406525 kcal Electronic energy + Delta-G solvation = -27595.907293 eV Core-core repulsion = 23839.295560 eV Total energy + Delta-G solvation = -3756.611732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.65846 -39.08213 -38.20483 -37.02303 -36.78894 -34.74188 -34.53695 -31.00679 -30.61129 -29.40687 -28.47239 -27.04120 -24.84919 -24.00325 -23.36847 -22.90215 -20.99279 -19.87747 -18.80099 -18.65718 -18.16165 -17.64466 -17.06560 -16.80751 -16.44468 -16.23801 -15.79824 -15.30795 -15.21158 -15.04300 -14.65149 -14.49278 -14.04356 -13.96722 -13.60171 -13.55360 -13.29932 -13.27158 -13.14069 -13.08162 -12.92297 -12.82105 -12.75873 -12.56593 -12.34564 -12.28619 -12.12166 -11.96230 -11.77697 -11.72747 -11.59782 -11.41848 -11.26980 -10.57222 -10.55375 -9.94448 -9.71002 -8.14523 -6.28305 -0.26870 1.44491 1.45981 1.53484 2.04809 2.44480 2.65809 2.96557 3.16958 3.31043 3.66940 3.84657 3.93333 4.08612 4.20012 4.25588 4.40388 4.44188 4.51636 4.52941 4.54110 4.57209 4.57710 4.67543 4.75908 4.81540 4.90472 4.92435 4.97200 4.99796 5.06376 5.13579 5.21917 5.28033 5.30730 5.34791 5.43183 5.49508 5.57833 5.63838 5.77551 5.98717 6.12527 6.32400 6.83949 7.41818 8.93552 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009511 B = 0.006973 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.318306 B = 4014.808164 C = 5889.641816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.085 4.085 4 H 0.101 0.899 5 C -0.117 4.117 6 C 0.117 3.883 7 N -1.018 6.018 8 S 2.809 3.191 9 O -0.986 6.986 10 O -1.023 7.023 11 N -0.991 5.991 12 C 0.265 3.735 13 C -0.533 4.533 14 H 0.073 0.927 15 C 0.012 3.988 16 N -0.931 5.931 17 Si 0.956 3.044 18 H -0.261 1.261 19 H -0.291 1.291 20 H -0.266 1.266 21 C 0.128 3.872 22 C 0.040 3.960 23 O -0.411 6.411 24 C 0.023 3.977 25 C 0.117 3.883 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.008 0.992 36 H 0.019 0.981 37 H 0.264 0.736 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 -6.858 12.394 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.105 4.105 4 H 0.119 0.881 5 C -0.156 4.156 6 C -0.009 4.009 7 N -0.859 5.859 8 S 2.820 3.180 9 O -0.970 6.970 10 O -1.008 7.008 11 N -0.831 5.831 12 C 0.141 3.859 13 C -0.572 4.572 14 H 0.091 0.909 15 C -0.188 4.188 16 N -0.571 5.571 17 Si 0.781 3.219 18 H -0.185 1.185 19 H -0.217 1.217 20 H -0.191 1.191 21 C 0.002 3.998 22 C -0.039 4.039 23 O -0.331 6.331 24 C -0.073 4.073 25 C -0.008 4.008 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.821 -5.983 12.770 14.610 hybrid contribution -0.130 -0.308 -1.440 1.478 sum -3.951 -6.291 11.330 13.548 Atomic orbital electron populations 1.21741 0.94628 1.02031 1.02153 1.21518 0.96851 0.94306 1.02429 1.22282 0.92597 0.97921 0.97700 0.88100 1.22870 0.98031 0.97119 0.97553 1.22086 0.85563 0.96363 0.96860 1.58920 1.22411 1.47613 1.56947 1.00826 0.72035 0.72753 0.72430 1.93537 1.72821 1.85480 1.45165 1.93490 1.87247 1.40454 1.79560 1.57611 1.68210 1.38207 1.19063 1.18668 0.96570 0.95091 0.75566 1.21746 1.11309 1.28914 0.95257 0.90918 1.25806 0.99813 0.96012 0.97135 1.70076 1.41150 1.39970 1.05915 0.85635 0.80023 0.79271 0.76999 1.18549 1.21694 1.19074 1.21371 0.89495 0.87603 1.01356 1.23140 0.96775 0.92551 0.91390 1.88007 1.26067 1.61000 1.58005 1.22919 0.81436 1.01278 1.01663 1.21976 0.96207 0.89387 0.93186 0.93002 0.92218 0.91767 0.92638 0.90509 0.91752 0.88164 0.90811 0.92982 0.97380 0.96288 0.92689 0.87808 0.89225 0.93958 0.89350 0.91851 0.94229 0.89309 0.91704 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.80 71.98 0.71 -1.59 16 2 C -0.11 -2.08 5.29 30.59 0.16 -1.92 16 3 C -0.09 -1.86 2.92 -9.61 -0.03 -1.88 16 4 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 5 C -0.12 -3.06 5.94 32.06 0.19 -2.87 16 6 C 0.12 3.94 6.94 86.93 0.60 4.54 16 7 N -1.02 -36.64 3.75 -505.99 -1.90 -38.53 16 8 S 2.81 122.73 6.31 -56.49 -0.36 122.37 16 9 O -0.99 -43.32 15.40 -122.38 -1.88 -45.20 16 10 O -1.02 -52.95 16.33 -128.00 -2.09 -55.04 16 11 N -0.99 -42.90 2.79 -519.84 -1.45 -44.35 16 12 C 0.26 13.65 5.43 85.63 0.47 14.11 16 13 C -0.53 -27.55 9.38 25.60 0.24 -27.31 16 14 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 15 C 0.01 0.61 5.46 84.65 0.46 1.08 16 16 N -0.93 -53.99 13.29 21.45 0.28 -53.71 16 17 Si 0.96 41.23 29.54 68.60 2.03 43.25 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 19 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 21 C 0.13 4.47 5.82 86.38 0.50 4.97 16 22 C 0.04 1.29 6.25 71.98 0.45 1.74 16 23 O -0.41 -14.98 9.52 -137.76 -1.31 -16.30 16 24 C 0.02 0.63 11.01 113.37 1.25 1.88 16 25 C 0.12 3.25 6.65 86.73 0.58 3.83 16 26 H 0.05 0.86 7.69 -2.38 -0.02 0.84 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 1.17 8.00 -2.39 -0.02 1.15 16 30 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.06 1.93 7.94 -2.39 -0.02 1.91 16 32 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.01 0.48 6.99 -2.38 -0.02 0.47 16 36 H 0.02 1.03 7.77 -2.39 -0.02 1.01 16 37 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 38 H 0.10 3.37 8.13 -2.39 -0.02 3.35 16 39 H 0.09 2.87 7.35 -2.39 -0.02 2.85 16 40 H 0.04 1.48 7.80 -2.39 -0.02 1.46 16 41 H 0.09 2.18 8.14 -2.38 -0.02 2.17 16 42 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.06 1.73 7.82 -2.39 -0.02 1.72 16 46 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -71.25 382.46 -0.17 -71.42 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.93 Total: 19.52 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 5.58 Total: -3.43 kcal Atomic # 7 Polarization: -133.53 SS G_CDS: -3.06 Total: -136.59 kcal Atomic # 8 Polarization: -111.25 SS G_CDS: -5.29 Total: -116.54 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: 122.73 SS G_CDS: -0.36 Total: 122.37 kcal Total: -71.25 -0.17 -71.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330381568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.985 kcal (2) G-P(sol) polarization free energy of solvation -71.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds