Wall clock time and date at job start Fri Apr 10 2020 18:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09000 * 110.64140 * 305.70267 * 3 2 1 5 5 C 1.55163 * 110.72280 * 68.84201 * 3 2 1 6 6 C 1.55113 * 101.48569 * 153.73404 * 5 3 2 7 7 N 1.47428 * 104.94667 * 323.22395 * 6 5 3 8 8 S 1.65603 * 125.64876 * 204.03711 * 7 6 5 9 9 O 1.42101 * 106.40184 * 23.50024 * 8 7 6 10 10 O 1.42100 * 106.39665 * 156.41999 * 8 7 6 11 11 N 1.65597 * 107.21704 * 269.96033 * 8 7 6 12 12 C 1.46496 * 120.00163 * 90.00459 * 11 8 7 13 13 C 1.50697 * 109.47531 * 94.99601 * 12 11 8 14 14 H 1.08003 * 119.99453 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00748 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99503 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00698 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46939 * 59.99833 * 17 15 13 19 19 H 1.48492 * 109.47274 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46755 * 299.99891 * 17 15 13 21 21 C 1.46500 * 119.99913 * 270.00018 * 11 8 7 22 22 C 1.52999 * 109.47046 * 95.00306 * 21 11 8 23 23 O 1.42897 * 109.47140 * 65.00058 * 22 21 11 24 24 C 1.42902 * 113.99965 * 179.97438 * 23 22 21 25 25 C 1.47019 * 108.69839 * 24.00681 * 7 6 5 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 31 31 H 1.08999 * 111.00332 * 271.94492 * 5 3 2 32 32 H 1.09003 * 110.99642 * 35.79197 * 5 3 2 33 33 H 1.09007 * 110.41920 * 204.29707 * 6 5 3 34 34 H 1.09002 * 110.20838 * 82.04730 * 6 5 3 35 35 H 1.08996 * 109.47288 * 215.00071 * 12 11 8 36 36 H 1.09001 * 109.47115 * 334.99407 * 12 11 8 37 37 H 0.96992 * 119.99874 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.47150 * 214.99938 * 21 11 8 39 39 H 1.08999 * 109.47234 * 335.00310 * 21 11 8 40 40 H 1.09007 * 109.47399 * 184.99755 * 22 21 11 41 41 H 1.08999 * 109.47109 * 304.99734 * 22 21 11 42 42 H 1.09007 * 109.46977 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.47549 * 299.99670 * 24 23 22 44 44 H 1.08997 * 109.47259 * 60.00343 * 24 23 22 45 45 H 1.09001 * 109.87895 * 239.51837 * 25 7 6 46 46 H 1.09001 * 109.88318 * 118.36333 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 2.0032 -0.8283 5 6 1.7291 2.1347 1.3534 6 6 2.8478 3.2074 1.4158 7 7 4.0318 2.5568 0.8255 8 16 5.6078 2.9732 1.1172 9 8 5.6229 3.6289 2.3778 10 8 6.3869 1.8196 0.8317 11 7 6.0300 4.1128 -0.0077 12 6 5.8290 5.5352 0.2795 13 6 7.1047 6.1226 0.8258 14 1 7.9780 5.4988 0.9466 15 6 7.1570 7.4563 1.1715 16 7 6.0933 8.2158 1.0249 17 14 8.7385 8.1846 1.8480 18 1 9.8229 8.0312 0.8450 19 1 8.5347 9.6264 2.1392 20 1 9.1155 7.4753 3.0970 21 6 6.6046 3.6986 -1.2901 22 6 5.4949 3.6030 -2.3390 23 8 4.9469 4.9020 -2.5723 24 6 3.8971 4.9244 -3.5416 25 6 3.5814 1.4767 -0.0645 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 0.7417 2.5962 1.3385 32 1 1.8174 1.4312 2.1813 33 1 3.0463 3.4902 2.4497 34 1 2.5640 4.0819 0.8303 35 1 5.5529 6.0556 -0.6375 36 1 5.0326 5.6483 1.0152 37 1 6.1302 9.1541 1.2677 38 1 7.3450 4.4316 -1.6102 39 1 7.0822 2.7254 -1.1768 40 1 5.9065 3.2101 -3.2688 41 1 4.7107 2.9371 -1.9788 42 1 3.5346 5.9454 -3.6610 43 1 4.2759 4.5590 -4.4961 44 1 3.0796 4.2859 -3.2068 45 1 3.9879 0.5237 0.2742 46 1 3.9055 1.6783 -1.0855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330381569.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:17 Heat of formation + Delta-G solvation = -125.432340 kcal Electronic energy + Delta-G solvation = -27417.777552 eV Core-core repulsion = 23662.292145 eV Total energy + Delta-G solvation = -3755.485407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.76603 -37.77974 -36.58732 -35.30348 -35.11054 -33.94493 -32.45984 -29.73226 -29.45567 -28.57659 -26.72152 -25.66611 -23.27709 -22.79727 -22.29149 -21.66874 -20.22408 -18.39663 -17.47118 -16.96673 -16.31967 -16.06350 -15.86689 -15.55534 -15.09198 -14.63868 -14.56121 -14.37293 -14.21179 -13.79961 -13.38243 -13.05427 -12.77588 -12.51243 -12.45503 -12.19570 -12.15183 -12.00619 -11.91595 -11.59079 -11.47012 -11.34071 -11.20623 -11.14113 -10.97915 -10.85999 -10.77590 -10.68736 -10.59216 -10.52910 -10.31646 -9.94960 -9.67466 -9.32953 -8.74510 -8.31763 -7.96960 -5.94967 -3.97817 1.20638 3.39911 3.42856 3.47249 3.53276 4.10053 4.15986 4.35090 4.53031 4.61013 4.62669 4.98007 5.05605 5.13263 5.25130 5.29810 5.34048 5.39445 5.40417 5.46547 5.52160 5.54625 5.61931 5.63597 5.71138 5.76886 5.79200 5.84667 5.87075 5.88081 5.95156 6.07243 6.08640 6.23293 6.30183 6.45703 6.53745 6.70913 7.47345 7.49570 7.56622 7.81272 8.03193 8.34735 9.03583 9.65696 11.13590 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.004661 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.547282 B = 6005.281482 C = 6593.951477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.098 4.098 4 H 0.082 0.918 5 C -0.123 4.123 6 C 0.118 3.882 7 N -1.022 6.022 8 S 2.789 3.211 9 O -0.958 6.958 10 O -0.997 6.997 11 N -0.983 5.983 12 C 0.260 3.740 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.123 3.877 22 C 0.040 3.960 23 O -0.365 6.365 24 C 0.032 3.968 25 C 0.124 3.876 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.262 0.738 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.067 0.933 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.497 -14.007 -7.230 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.117 4.117 4 H 0.100 0.900 5 C -0.162 4.162 6 C -0.008 4.008 7 N -0.861 5.861 8 S 2.799 3.201 9 O -0.942 6.942 10 O -0.981 6.981 11 N -0.824 5.824 12 C 0.138 3.862 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.005 4.005 22 C -0.039 4.039 23 O -0.283 6.283 24 C -0.065 4.065 25 C -0.002 4.002 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.085 0.915 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.833 -13.955 -6.382 18.784 hybrid contribution 0.443 0.498 -0.208 0.699 sum -10.390 -13.457 -6.590 18.233 Atomic orbital electron populations 1.21762 0.95643 1.01447 1.01975 1.21531 0.95998 0.95502 1.02294 1.22280 0.94344 0.96564 0.98558 0.89951 1.22881 0.98369 0.97860 0.97068 1.22003 0.84334 0.95331 0.99109 1.59376 1.23479 1.44484 1.58746 1.01733 0.71781 0.72568 0.74023 1.93622 1.85596 1.75408 1.39597 1.93505 1.67784 1.50628 1.86207 1.57736 1.75037 1.20971 1.28625 1.19098 0.96580 0.73021 0.97497 1.21480 0.97939 0.94652 1.42556 0.92498 1.24891 0.96499 0.96926 0.95588 1.69923 1.28438 1.06615 1.48440 0.86626 0.83654 0.77872 0.79670 1.20272 1.21267 1.20126 1.21260 0.94798 1.01721 0.82697 1.23258 0.96672 0.85594 0.98332 1.88148 1.51933 1.28080 1.60123 1.22690 0.90233 1.02386 0.91237 1.21729 0.94546 0.90410 0.93466 0.92495 0.92778 0.92907 0.91617 0.91789 0.90228 0.90756 0.90016 0.91471 0.92866 0.95108 0.92841 0.88673 0.89067 0.93164 0.93847 0.89885 0.94843 0.94795 0.91469 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.78 37.16 0.36 -0.68 16 2 C -0.12 -0.93 5.29 -26.73 -0.14 -1.07 16 3 C -0.10 -0.96 2.94 -88.79 -0.26 -1.22 16 4 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.12 -1.28 5.82 -24.47 -0.14 -1.42 16 6 C 0.12 1.68 7.11 -2.42 -0.02 1.67 16 7 N -1.02 -16.43 3.76 -111.30 -0.42 -16.85 16 8 S 2.79 57.83 6.31 -107.50 -0.68 57.15 16 9 O -0.96 -23.76 16.43 -57.17 -0.94 -24.70 16 10 O -1.00 -21.15 16.27 -57.17 -0.93 -22.08 16 11 N -0.98 -21.03 2.81 -115.67 -0.33 -21.36 16 12 C 0.26 6.71 4.94 -5.20 -0.03 6.68 16 13 C -0.53 -15.17 9.38 -34.44 -0.32 -15.49 16 14 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 15 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 17 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.12 2.19 6.13 -4.04 -0.02 2.17 16 22 C 0.04 0.60 6.28 37.16 0.23 0.83 16 23 O -0.36 -6.30 9.02 -35.23 -0.32 -6.62 16 24 C 0.03 0.40 11.01 101.05 1.11 1.51 16 25 C 0.12 1.57 6.59 -3.07 -0.02 1.55 16 26 H 0.06 0.39 7.59 -51.93 -0.39 0.00 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.54 8.06 -51.93 -0.42 0.13 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.75 7.98 -51.93 -0.41 0.33 16 33 H 0.08 1.25 7.78 -51.93 -0.40 0.85 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 1.43 6.60 -51.93 -0.34 1.09 16 36 H 0.03 0.85 7.61 -51.93 -0.40 0.46 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.09 1.78 8.11 -51.93 -0.42 1.36 16 39 H 0.09 1.48 6.91 -51.93 -0.36 1.12 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.04 0.60 5.66 -51.93 -0.29 0.30 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.84 7.82 -51.93 -0.41 0.43 16 46 H 0.06 0.70 5.66 -51.93 -0.29 0.41 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -34.64 376.79 -9.47 -44.11 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -7.92 Total: -2.97 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 0.66 Total: -3.74 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: -0.01 Total: -64.16 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -2.19 Total: -53.39 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 57.83 SS G_CDS: -0.68 Total: 57.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.64 -9.47 -44.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330381569.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.319 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds