Wall clock time and date at job start Fri Apr 10 2020 18:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09000 * 110.64140 * 305.70267 * 3 2 1 5 5 C 1.55163 * 110.72280 * 68.84201 * 3 2 1 6 6 C 1.55113 * 101.48569 * 153.73404 * 5 3 2 7 7 N 1.47428 * 104.94667 * 323.22395 * 6 5 3 8 8 S 1.65603 * 125.64876 * 204.03711 * 7 6 5 9 9 O 1.42101 * 106.40184 * 23.50024 * 8 7 6 10 10 O 1.42100 * 106.39665 * 156.41999 * 8 7 6 11 11 N 1.65597 * 107.21704 * 269.96033 * 8 7 6 12 12 C 1.46496 * 120.00163 * 90.00459 * 11 8 7 13 13 C 1.50697 * 109.47531 * 94.99601 * 12 11 8 14 14 H 1.08003 * 119.99453 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00748 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99503 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00698 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46939 * 59.99833 * 17 15 13 19 19 H 1.48492 * 109.47274 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46755 * 299.99891 * 17 15 13 21 21 C 1.46500 * 119.99913 * 270.00018 * 11 8 7 22 22 C 1.52999 * 109.47046 * 95.00306 * 21 11 8 23 23 O 1.42897 * 109.47140 * 65.00058 * 22 21 11 24 24 C 1.42902 * 113.99965 * 179.97438 * 23 22 21 25 25 C 1.47019 * 108.69839 * 24.00681 * 7 6 5 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 31 31 H 1.08999 * 111.00332 * 271.94492 * 5 3 2 32 32 H 1.09003 * 110.99642 * 35.79197 * 5 3 2 33 33 H 1.09007 * 110.41920 * 204.29707 * 6 5 3 34 34 H 1.09002 * 110.20838 * 82.04730 * 6 5 3 35 35 H 1.08996 * 109.47288 * 215.00071 * 12 11 8 36 36 H 1.09001 * 109.47115 * 334.99407 * 12 11 8 37 37 H 0.96992 * 119.99874 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.47150 * 214.99938 * 21 11 8 39 39 H 1.08999 * 109.47234 * 335.00310 * 21 11 8 40 40 H 1.09007 * 109.47399 * 184.99755 * 22 21 11 41 41 H 1.08999 * 109.47109 * 304.99734 * 22 21 11 42 42 H 1.09007 * 109.46977 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.47549 * 299.99670 * 24 23 22 44 44 H 1.08997 * 109.47259 * 60.00343 * 24 23 22 45 45 H 1.09001 * 109.87895 * 239.51837 * 25 7 6 46 46 H 1.09001 * 109.88318 * 118.36333 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 2.0032 -0.8283 5 6 1.7291 2.1347 1.3534 6 6 2.8478 3.2074 1.4158 7 7 4.0318 2.5568 0.8255 8 16 5.6078 2.9732 1.1172 9 8 5.6229 3.6289 2.3778 10 8 6.3869 1.8196 0.8317 11 7 6.0300 4.1128 -0.0077 12 6 5.8290 5.5352 0.2795 13 6 7.1047 6.1226 0.8258 14 1 7.9780 5.4988 0.9466 15 6 7.1570 7.4563 1.1715 16 7 6.0933 8.2158 1.0249 17 14 8.7385 8.1846 1.8480 18 1 9.8229 8.0312 0.8450 19 1 8.5347 9.6264 2.1392 20 1 9.1155 7.4753 3.0970 21 6 6.6046 3.6986 -1.2901 22 6 5.4949 3.6030 -2.3390 23 8 4.9469 4.9020 -2.5723 24 6 3.8971 4.9244 -3.5416 25 6 3.5814 1.4767 -0.0645 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 0.7417 2.5962 1.3385 32 1 1.8174 1.4312 2.1813 33 1 3.0463 3.4902 2.4497 34 1 2.5640 4.0819 0.8303 35 1 5.5529 6.0556 -0.6375 36 1 5.0326 5.6483 1.0152 37 1 6.1302 9.1541 1.2677 38 1 7.3450 4.4316 -1.6102 39 1 7.0822 2.7254 -1.1768 40 1 5.9065 3.2101 -3.2688 41 1 4.7107 2.9371 -1.9788 42 1 3.5346 5.9454 -3.6610 43 1 4.2759 4.5590 -4.4961 44 1 3.0796 4.2859 -3.2068 45 1 3.9879 0.5237 0.2742 46 1 3.9055 1.6783 -1.0855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330381569.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:16 Heat of formation + Delta-G solvation = -150.405977 kcal Electronic energy + Delta-G solvation = -27418.860490 eV Core-core repulsion = 23662.292145 eV Total energy + Delta-G solvation = -3756.568345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.76255 -39.05733 -38.32911 -36.98527 -36.85800 -34.79592 -34.57013 -31.10828 -30.65393 -29.47697 -28.47366 -26.96294 -24.64033 -24.03559 -23.49438 -23.13790 -21.01774 -19.89424 -19.06880 -18.53072 -18.30598 -17.52136 -17.07900 -16.83823 -16.54766 -16.27135 -15.83354 -15.32915 -15.21377 -15.08168 -14.77946 -14.44977 -14.02855 -13.91557 -13.67999 -13.58020 -13.39322 -13.36620 -13.25132 -13.17772 -12.94513 -12.86706 -12.73997 -12.55473 -12.48423 -12.24575 -12.04755 -11.94640 -11.87456 -11.71328 -11.65067 -11.45009 -11.30817 -10.58032 -10.44491 -9.99724 -9.75442 -8.16183 -6.27590 -0.41112 1.38276 1.42227 1.49186 2.00421 2.41101 2.56737 2.99942 3.14598 3.20675 3.59556 3.74226 3.84361 3.98562 4.14481 4.26455 4.38078 4.41099 4.43010 4.49649 4.55724 4.59504 4.62830 4.63535 4.73911 4.81621 4.89762 4.91822 4.92384 5.01304 5.06353 5.10820 5.16969 5.27120 5.31530 5.34406 5.38245 5.48165 5.58378 5.65050 5.73602 5.98547 6.16708 6.43369 6.80620 7.39791 8.91281 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.004661 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.547282 B = 6005.281482 C = 6593.951477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.087 4.087 4 H 0.095 0.905 5 C -0.112 4.112 6 C 0.107 3.893 7 N -1.019 6.019 8 S 2.801 3.199 9 O -1.008 7.008 10 O -1.005 7.005 11 N -0.990 5.990 12 C 0.284 3.716 13 C -0.550 4.550 14 H 0.049 0.951 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.955 3.045 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.278 1.278 21 C 0.113 3.887 22 C 0.045 3.955 23 O -0.406 6.406 24 C 0.027 3.973 25 C 0.112 3.888 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.004 0.996 37 H 0.266 0.734 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.070 0.930 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.504 -15.429 -8.592 21.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.107 4.107 4 H 0.113 0.887 5 C -0.151 4.151 6 C -0.018 4.018 7 N -0.861 5.861 8 S 2.812 3.188 9 O -0.992 6.992 10 O -0.989 6.989 11 N -0.830 5.830 12 C 0.160 3.840 13 C -0.589 4.589 14 H 0.067 0.933 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.780 3.220 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.203 1.203 21 C -0.013 4.013 22 C -0.033 4.033 23 O -0.326 6.326 24 C -0.069 4.069 25 C -0.012 4.012 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.826 -15.399 -7.774 20.915 hybrid contribution 0.698 0.876 0.177 1.134 sum -11.128 -14.524 -7.597 19.811 Atomic orbital electron populations 1.21748 0.94585 1.02073 1.02253 1.21518 0.96815 0.93978 1.02685 1.22288 0.91997 0.98032 0.98415 0.88697 1.22885 0.97741 0.96653 0.97812 1.22207 0.84997 0.96785 0.97797 1.58980 1.22253 1.45319 1.59523 1.01018 0.72671 0.72032 0.73043 1.93551 1.86777 1.76454 1.42428 1.93479 1.68898 1.50368 1.86123 1.57603 1.76106 1.19151 1.30125 1.18510 0.94494 0.75302 0.95679 1.21846 0.98806 0.95238 1.43047 0.93255 1.25725 0.99831 0.97360 0.95779 1.70024 1.30231 1.06973 1.49031 0.85666 0.79978 0.77437 0.78961 1.18906 1.20030 1.20336 1.21511 0.95899 1.01795 0.82124 1.23223 0.96114 0.85262 0.98740 1.88084 1.53406 1.29383 1.61687 1.22857 0.89742 1.02896 0.91396 1.22103 0.96808 0.89123 0.93196 0.92458 0.92276 0.92182 0.91918 0.90827 0.87784 0.90264 0.91979 0.91832 0.94242 0.97851 0.92526 0.90248 0.87497 0.89751 0.92490 0.90130 0.92546 0.93250 0.91196 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.78 71.98 0.70 -0.87 16 2 C -0.11 -1.44 5.29 30.59 0.16 -1.28 16 3 C -0.09 -1.47 2.94 -9.61 -0.03 -1.50 16 4 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 5 C -0.11 -2.10 5.82 32.06 0.19 -1.91 16 6 C 0.11 3.07 7.11 86.93 0.62 3.69 16 7 N -1.02 -32.55 3.76 -506.04 -1.90 -34.46 16 8 S 2.80 118.76 6.31 -56.49 -0.36 118.40 16 9 O -1.01 -52.27 16.43 -128.00 -2.10 -54.38 16 10 O -1.00 -42.62 16.27 -128.00 -2.08 -44.70 16 11 N -0.99 -43.43 2.81 -519.87 -1.46 -44.89 16 12 C 0.28 15.26 4.94 85.63 0.42 15.68 16 13 C -0.55 -32.68 9.38 25.60 0.24 -32.44 16 14 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 15 C 0.01 0.73 5.46 84.65 0.46 1.19 16 16 N -0.92 -56.19 13.29 21.45 0.28 -55.91 16 17 Si 0.95 46.28 29.54 68.60 2.03 48.31 16 18 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 21 C 0.11 4.02 6.13 86.38 0.53 4.55 16 22 C 0.04 1.27 6.28 71.98 0.45 1.72 16 23 O -0.41 -13.77 9.02 -148.98 -1.34 -15.11 16 24 C 0.03 0.64 11.01 113.37 1.25 1.89 16 25 C 0.11 2.62 6.59 86.73 0.57 3.19 16 26 H 0.06 0.61 7.59 -2.39 -0.02 0.59 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.86 8.06 -2.39 -0.02 0.84 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.43 7.98 -2.39 -0.02 1.41 16 33 H 0.06 2.00 7.78 -2.38 -0.02 1.98 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 2.22 6.60 -2.39 -0.02 2.20 16 36 H 0.00 0.21 7.61 -2.39 -0.02 0.19 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.44 16 38 H 0.08 3.05 8.11 -2.39 -0.02 3.03 16 39 H 0.11 3.41 6.91 -2.39 -0.02 3.39 16 40 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.06 1.44 5.66 -2.39 -0.01 1.43 16 42 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 1.60 7.82 -2.39 -0.02 1.58 16 46 H 0.07 1.49 5.66 -2.39 -0.01 1.48 16 Total: -1.00 -76.88 376.79 -0.43 -77.31 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.94 Total: 11.50 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 5.57 Total: -6.08 kcal Atomic # 7 Polarization: -132.18 SS G_CDS: -3.08 Total: -135.25 kcal Atomic # 8 Polarization: -108.66 SS G_CDS: -5.53 Total: -114.19 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: 118.76 SS G_CDS: -0.36 Total: 118.40 kcal Total: -76.88 -0.43 -77.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330381569.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.095 kcal (2) G-P(sol) polarization free energy of solvation -76.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds