Wall clock time and date at job start Fri Apr 10 2020 18:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47241 * 2 1 4 4 C 1.52998 * 109.47096 * 239.99787 * 2 1 3 5 5 H 1.09002 * 109.47398 * 305.21750 * 4 2 1 6 6 O 1.42900 * 109.47227 * 65.21741 * 4 2 1 7 7 C 1.53008 * 109.47048 * 185.21660 * 4 2 1 8 8 C 1.53005 * 115.54755 * 55.91136 * 7 4 2 9 9 N 1.46497 * 109.46636 * 183.53703 * 8 7 4 10 10 S 1.65604 * 119.99694 * 165.00052 * 9 8 7 11 11 O 1.42101 * 106.40167 * 178.53889 * 10 9 8 12 12 O 1.42100 * 106.40076 * 311.45642 * 10 9 8 13 13 N 1.65601 * 107.21905 * 65.00046 * 10 9 8 14 14 C 1.46500 * 119.99830 * 270.00110 * 13 10 9 15 15 C 1.46500 * 119.99868 * 89.99962 * 13 10 9 16 16 C 1.50696 * 109.47030 * 95.00323 * 15 13 10 17 17 H 1.08002 * 119.99838 * 359.97438 * 16 15 13 18 18 C 1.37876 * 120.00202 * 179.97438 * 16 15 13 19 19 N 1.31515 * 119.99594 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00490 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46777 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47076 * 119.99770 * 20 18 16 23 23 H 1.48493 * 109.47120 * 240.00502 * 20 18 16 24 24 C 1.52993 * 117.49924 * 270.24179 * 7 4 2 25 25 C 1.52997 * 117.49678 * 201.58011 * 7 4 2 26 26 H 1.09003 * 109.47234 * 57.55284 * 1 2 3 27 27 H 1.08996 * 109.47307 * 297.54905 * 1 2 3 28 28 H 1.09002 * 109.47384 * 177.55037 * 1 2 3 29 29 H 1.09007 * 109.46841 * 120.00037 * 2 1 3 30 30 H 1.09003 * 109.46971 * 60.00005 * 3 2 1 31 31 H 1.09000 * 109.47366 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.47206 * 299.99892 * 3 2 1 33 33 H 0.96705 * 113.99733 * 59.99745 * 6 4 2 34 34 H 1.08998 * 109.47008 * 303.53430 * 8 7 4 35 35 H 1.08998 * 109.46896 * 63.53889 * 8 7 4 36 36 H 0.96997 * 120.00513 * 344.99803 * 9 8 7 37 37 H 1.08998 * 109.47067 * 89.99708 * 14 13 10 38 38 H 1.08996 * 109.47059 * 209.99850 * 14 13 10 39 39 H 1.09002 * 109.47008 * 330.00116 * 14 13 10 40 40 H 1.09003 * 109.46942 * 214.99814 * 15 13 10 41 41 H 1.08996 * 109.47538 * 334.99874 * 15 13 10 42 42 H 0.97005 * 119.99868 * 180.02562 * 19 18 16 43 43 H 1.09005 * 117.50107 * 359.97438 * 24 7 4 44 44 H 1.08998 * 117.49984 * 145.02223 * 24 7 4 45 45 H 1.09001 * 117.49819 * 214.97845 * 25 7 4 46 46 H 1.08996 * 117.50257 * 359.97438 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 1 1.6023 -1.7185 -1.2972 6 8 1.6663 0.0193 -2.4128 7 6 3.5644 -0.8359 -1.1853 8 6 4.1228 -1.5222 0.0630 9 7 5.5868 -1.4847 0.0271 10 16 6.4573 -1.8106 1.3977 11 8 7.8279 -1.7281 1.0317 12 8 5.8813 -1.0278 2.4344 13 7 6.1735 -3.3932 1.7939 14 6 5.0598 -3.7378 2.6812 15 6 7.0361 -4.4487 1.2571 16 6 8.1192 -4.7682 2.2550 17 1 8.1611 -4.2377 3.1948 18 6 9.0567 -5.7376 1.9682 19 7 9.0059 -6.3832 0.8235 20 14 10.3998 -6.1332 3.2047 21 1 10.2379 -5.2720 4.4037 22 1 10.3012 -7.5604 3.6029 23 1 11.7280 -5.8811 2.5905 24 6 4.3845 0.3049 -1.7909 25 6 4.3126 -1.0483 -2.5028 26 1 -0.3634 0.5514 -0.8672 27 1 -0.3634 0.4753 0.9111 28 1 -0.3634 -1.0267 -0.0439 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8899 33 1 2.0213 0.9185 -2.4375 34 1 3.7677 -1.0025 0.9528 35 1 3.7864 -2.5586 0.0889 36 1 6.0464 -1.2690 -0.7994 37 1 4.1636 -3.9159 2.0869 38 1 5.3081 -4.6382 3.2430 39 1 4.8792 -2.9156 3.3736 40 1 6.4416 -5.3425 1.0676 41 1 7.4888 -4.1093 0.3256 42 1 9.6652 -7.0655 0.6218 43 1 3.8382 1.1369 -2.2353 44 1 5.3222 0.5662 -1.3004 45 1 5.2030 -1.6767 -2.4803 46 1 3.7189 -1.1069 -3.4150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331766849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:37 Heat of formation + Delta-G solvation = -134.068493 kcal Electronic energy + Delta-G solvation = -26803.253884 eV Core-core repulsion = 23047.393985 eV Total energy + Delta-G solvation = -3755.859899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.98397 -38.30291 -37.45187 -37.21474 -36.86751 -34.86162 -34.51709 -34.18087 -29.67971 -29.00619 -28.05850 -26.80557 -26.14827 -24.22098 -23.33125 -21.48480 -20.55193 -20.19679 -19.10228 -18.48049 -18.33291 -17.60227 -17.45459 -16.89563 -16.55987 -16.29778 -15.69655 -15.54991 -15.03061 -14.94154 -14.40840 -14.37376 -14.09138 -13.93104 -13.87795 -13.55329 -13.34081 -13.15798 -13.09627 -13.04038 -12.93883 -12.85971 -12.80292 -12.48032 -12.40384 -12.34866 -12.19784 -11.99787 -11.84865 -11.73592 -11.63317 -11.45309 -10.96257 -10.64222 -10.60037 -10.21502 -9.79363 -8.21629 -6.33481 -0.33498 1.37798 1.40398 1.51950 2.02635 2.39581 2.61489 2.74818 3.09400 3.35728 3.46587 3.69149 3.70876 3.89398 3.93925 4.07804 4.10126 4.17948 4.32144 4.42661 4.59991 4.69944 4.75185 4.78488 4.80923 4.84921 4.91441 4.95096 5.05134 5.06968 5.08161 5.11655 5.17020 5.19797 5.26166 5.29399 5.45521 5.48324 5.50800 5.68827 5.83612 6.05662 6.11420 6.75209 6.78019 7.35591 8.86049 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024098 B = 0.003368 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.665116 B = 8310.730067 C = 8484.003314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C -0.156 4.156 4 C 0.159 3.841 5 H 0.105 0.895 6 O -0.561 6.561 7 C -0.163 4.163 8 C 0.150 3.850 9 N -1.120 6.120 10 S 2.800 3.200 11 O -1.012 7.012 12 O -1.006 7.006 13 N -1.002 6.002 14 C 0.086 3.914 15 C 0.272 3.728 16 C -0.550 4.550 17 H 0.051 0.949 18 C 0.012 3.988 19 N -0.924 5.924 20 Si 0.957 3.043 21 H -0.270 1.270 22 H -0.269 1.269 23 H -0.280 1.280 24 C -0.169 4.169 25 C -0.168 4.168 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.380 0.620 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.418 0.582 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.029 0.971 41 H 0.016 0.984 42 H 0.267 0.733 43 H 0.116 0.884 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.822 12.973 -5.150 22.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.213 4.213 4 C 0.099 3.901 5 H 0.123 0.877 6 O -0.369 6.369 7 C -0.165 4.165 8 C 0.024 3.976 9 N -0.884 5.884 10 S 2.807 3.193 11 O -0.996 6.996 12 O -0.989 6.989 13 N -0.844 5.844 14 C -0.059 4.059 15 C 0.149 3.851 16 C -0.589 4.589 17 H 0.070 0.930 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.781 3.219 21 H -0.194 1.194 22 H -0.194 1.194 23 H -0.205 1.205 24 C -0.205 4.205 25 C -0.205 4.205 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.231 0.769 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.255 0.745 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.034 0.966 42 H 0.076 0.924 43 H 0.134 0.866 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.606 12.852 -4.728 22.305 hybrid contribution 1.428 -0.214 0.153 1.452 sum -16.178 12.638 -4.575 21.032 Atomic orbital electron populations 1.21742 0.94026 1.02047 1.01946 1.21809 0.96986 0.97537 0.98453 1.21923 1.01448 0.95459 1.02517 1.21248 0.88296 0.95736 0.84845 0.87736 1.86575 1.76575 1.30727 1.43060 1.22375 0.95691 1.04301 0.94102 1.20849 0.77434 1.01093 0.98222 1.55903 1.16357 1.87067 1.29080 1.01146 0.72046 0.72738 0.73322 1.93577 1.34796 1.87023 1.84227 1.93502 1.79820 1.68850 1.56760 1.57461 1.41471 1.24754 1.60740 1.21622 0.87811 1.02652 0.93852 1.18597 0.87863 0.85811 0.92857 1.21879 1.12952 1.20270 1.03847 0.93025 1.25746 0.99857 0.95773 0.97402 1.70014 1.37082 1.25406 1.23839 0.85531 0.78858 0.78352 0.79118 1.19433 1.19407 1.20535 1.23161 1.01790 0.92526 1.03069 1.23075 1.02087 0.99597 0.95729 0.92354 0.92368 0.92588 0.90268 0.92316 0.92362 0.91486 0.76943 0.89535 0.90385 0.74521 0.90675 0.91158 0.90581 0.95257 0.96645 0.92364 0.86572 0.89064 0.89433 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.06 71.98 0.65 -1.14 16 2 C -0.13 -1.79 2.54 -10.80 -0.03 -1.82 16 3 C -0.16 -2.02 8.31 71.98 0.60 -1.43 16 4 C 0.16 2.38 2.92 30.60 0.09 2.47 16 5 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 6 O -0.56 -8.35 11.91 -148.98 -1.77 -10.12 16 7 C -0.16 -2.83 1.73 -52.18 -0.09 -2.92 16 8 C 0.15 3.26 6.00 86.38 0.52 3.78 16 9 N -1.12 -31.19 5.41 -187.49 -1.01 -32.21 16 10 S 2.80 108.05 6.10 -56.49 -0.34 107.71 16 11 O -1.01 -48.94 17.11 -128.00 -2.19 -51.13 16 12 O -1.01 -39.85 16.21 -128.00 -2.07 -41.92 16 13 N -1.00 -40.58 3.23 -543.24 -1.75 -42.33 16 14 C 0.09 2.75 10.68 127.77 1.36 4.12 16 15 C 0.27 13.76 5.08 85.63 0.43 14.19 16 16 C -0.55 -31.29 9.38 25.60 0.24 -31.05 16 17 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 18 C 0.01 0.67 5.46 84.65 0.46 1.13 16 19 N -0.92 -54.20 13.29 21.45 0.28 -53.91 16 20 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 C -0.17 -2.70 7.37 30.62 0.23 -2.47 16 25 C -0.17 -3.01 9.19 30.62 0.28 -2.73 16 26 H 0.06 0.76 7.89 -2.39 -0.02 0.74 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 1.18 6.52 -2.38 -0.02 1.17 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.85 6.20 -2.39 -0.01 0.84 16 32 H 0.07 0.67 6.71 -2.39 -0.02 0.65 16 33 H 0.38 3.89 5.28 -74.05 -0.39 3.50 16 34 H 0.09 1.84 6.29 -2.39 -0.02 1.83 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.42 10.78 5.89 -96.75 -0.57 10.21 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 39 H 0.08 2.28 7.02 -2.39 -0.02 2.26 16 40 H 0.03 1.50 8.11 -2.39 -0.02 1.48 16 41 H 0.02 0.84 7.61 -2.39 -0.02 0.83 16 42 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 43 H 0.12 1.32 6.42 -2.38 -0.02 1.30 16 44 H 0.09 1.67 7.07 -2.39 -0.02 1.65 16 45 H 0.09 1.78 6.96 -2.39 -0.02 1.76 16 46 H 0.11 1.85 7.79 -2.39 -0.02 1.84 16 Total: -1.00 -71.68 370.65 -2.06 -73.74 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.03 Total: 21.23 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 4.75 Total: -17.87 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -2.48 Total: -128.45 kcal Atomic # 8 Polarization: -97.13 SS G_CDS: -6.04 Total: -103.17 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 108.05 SS G_CDS: -0.34 Total: 107.71 kcal Total: -71.68 -2.06 -73.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331766849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.325 kcal (2) G-P(sol) polarization free energy of solvation -71.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds