Wall clock time and date at job start Fri Apr 10 2020 18:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47588 * 2 1 4 4 H 1.09001 * 109.40898 * 305.16460 * 3 2 1 5 5 C 1.54665 * 109.41814 * 185.58816 * 3 2 1 6 6 N 1.48178 * 110.49102 * 200.68254 * 5 3 2 7 7 S 1.65604 * 118.51539 * 138.65174 * 6 5 3 8 8 O 1.42101 * 106.40024 * 156.19174 * 7 6 5 9 9 O 1.42097 * 106.39867 * 23.27884 * 7 6 5 10 10 N 1.65597 * 107.21894 * 269.73667 * 7 6 5 11 11 C 1.46500 * 120.00076 * 269.99600 * 10 7 6 12 12 C 1.46500 * 119.99996 * 90.00242 * 10 7 6 13 13 H 1.09002 * 109.47129 * 359.97438 * 12 10 7 14 14 C 1.52997 * 109.47473 * 119.99730 * 12 10 7 15 15 C 1.50708 * 109.47008 * 239.99898 * 12 10 7 16 16 H 1.08000 * 119.99723 * 359.97438 * 15 12 10 17 17 C 1.37873 * 119.99930 * 179.97438 * 15 12 10 18 18 N 1.31509 * 120.00195 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99968 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46680 * 60.00159 * 19 17 15 21 21 H 1.48492 * 109.47298 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46944 * 300.00675 * 19 17 15 23 23 C 1.44460 * 122.97138 * 318.37708 * 6 5 3 24 24 C 1.54881 * 109.32771 * 89.21568 * 23 6 5 25 25 C 1.47690 * 109.67846 * 290.10158 * 24 23 6 26 26 O 1.40529 * 109.40425 * 64.99907 * 3 2 1 27 27 H 1.09000 * 109.47045 * 300.00351 * 1 2 3 28 28 H 1.08998 * 109.46924 * 59.99728 * 1 2 3 29 29 H 1.08995 * 109.47487 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47045 * 239.99649 * 2 1 3 31 31 H 1.08998 * 109.46924 * 120.00272 * 2 1 3 32 32 H 1.08998 * 109.43454 * 80.36759 * 5 3 2 33 33 H 1.09001 * 109.23831 * 320.87108 * 5 3 2 34 34 H 1.08994 * 109.47032 * 270.00329 * 11 10 7 35 35 H 1.08998 * 109.46624 * 30.00124 * 11 10 7 36 36 H 1.08998 * 109.46783 * 149.99869 * 11 10 7 37 37 H 1.09002 * 109.47153 * 59.99757 * 14 12 10 38 38 H 1.09001 * 109.46832 * 299.99948 * 14 12 10 39 39 H 1.09004 * 109.47261 * 179.97438 * 14 12 10 40 40 H 0.97006 * 120.00358 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.49472 * 209.16579 * 23 6 5 42 42 H 1.08994 * 109.49479 * 329.25669 * 23 6 5 43 43 H 1.08997 * 109.43461 * 50.16272 * 24 23 6 44 44 H 1.08994 * 109.43855 * 170.03437 * 24 23 6 45 45 H 1.08992 * 108.64564 * 181.88258 * 25 24 23 46 46 H 1.09007 * 108.64362 * 299.72155 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6027 1.9813 -0.8404 5 6 3.5802 1.4432 -0.1420 6 7 4.1450 2.7254 0.3403 7 16 5.5337 2.6883 1.2417 8 8 6.1425 3.9637 1.0935 9 8 6.1907 1.4710 0.9164 10 7 5.0836 2.5667 2.8307 11 6 4.8600 3.7782 3.6235 12 6 4.9090 1.2476 3.4437 13 1 5.1172 0.4733 2.7052 14 6 5.8735 1.1012 4.6224 15 6 3.4911 1.1052 3.9341 16 1 2.7903 1.9164 3.8027 17 6 3.0887 -0.0605 4.5505 18 7 3.9422 -1.0481 4.7110 19 14 1.3314 -0.2368 5.1590 20 1 0.3950 -0.0939 4.0154 21 1 1.1544 -1.5738 5.7802 22 1 1.0480 0.8177 6.1655 23 6 3.5422 4.0068 0.0549 24 6 2.5130 4.3470 1.1612 25 6 1.3456 3.4496 1.0473 26 8 1.6677 2.0694 1.2013 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8479 1.3044 -1.1895 33 1 3.9955 0.6244 0.4455 34 1 5.7933 4.0778 4.1001 35 1 4.5111 4.5794 2.9720 36 1 4.1093 3.5786 4.3880 37 1 5.6650 1.8755 5.3607 38 1 6.8990 1.2042 4.2676 39 1 5.7433 0.1199 5.0787 40 1 3.6592 -1.8682 5.1450 41 1 4.3153 4.7748 0.0288 42 1 3.0380 3.9647 -0.9105 43 1 2.9760 4.2175 2.1394 44 1 2.1879 5.3812 1.0485 45 1 0.6185 3.7251 1.8111 46 1 0.8894 3.5938 0.0679 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331990864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:47 Heat of formation + Delta-G solvation = -115.284235 kcal Electronic energy + Delta-G solvation = -28995.986532 eV Core-core repulsion = 25240.941180 eV Total energy + Delta-G solvation = -3755.045352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.35463 -36.77935 -36.06675 -35.35933 -35.17782 -34.11556 -32.47772 -31.38026 -28.99423 -27.82663 -25.94464 -25.39741 -25.04779 -22.65085 -21.57495 -20.76041 -20.42240 -18.25381 -17.22129 -16.97340 -16.66273 -16.22829 -15.77657 -15.40493 -15.06389 -14.39998 -13.95764 -13.69723 -13.59945 -13.42205 -13.31395 -13.19549 -12.85507 -12.55227 -12.08795 -11.95363 -11.86756 -11.80635 -11.62758 -11.48212 -11.33334 -11.24673 -11.12977 -10.91076 -10.81567 -10.75384 -10.69873 -10.39854 -10.34384 -10.25075 -10.11878 -9.93739 -9.33718 -9.08029 -8.60287 -8.34792 -7.84521 -5.95969 -4.00908 1.28341 3.35278 3.39565 3.41076 3.46768 4.07958 4.16137 4.48467 4.80317 4.86946 5.00712 5.11560 5.22821 5.28915 5.35498 5.39088 5.47626 5.52241 5.55784 5.69086 5.74370 5.84086 5.87357 5.95539 6.01308 6.06904 6.14313 6.21544 6.24722 6.39125 6.46175 6.50661 6.59274 6.70917 6.90650 6.94368 7.03408 7.20383 7.57565 7.75057 7.75534 7.88520 8.16101 8.38723 9.02874 9.64203 11.09483 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.008890 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.470761 B = 3148.685222 C = 4522.711232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.089 3.911 4 H 0.052 0.948 5 C 0.104 3.896 6 N -0.995 5.995 7 S 2.776 3.224 8 O -1.001 7.001 9 O -0.982 6.982 10 N -0.986 5.986 11 C 0.107 3.893 12 C 0.271 3.729 13 H 0.054 0.946 14 C -0.145 4.145 15 C -0.503 4.503 16 H 0.067 0.933 17 C 0.064 3.936 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.117 3.883 24 C -0.185 4.185 25 C 0.069 3.931 26 O -0.333 6.333 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.040 0.960 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.031 0.969 38 H 0.009 0.991 39 H 0.092 0.908 40 H 0.261 0.739 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 7.651 -9.249 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.029 3.971 4 H 0.070 0.930 5 C -0.022 4.022 6 N -0.832 5.832 7 S 2.787 3.213 8 O -0.985 6.985 9 O -0.966 6.966 10 N -0.828 5.828 11 C -0.040 4.040 12 C 0.168 3.832 13 H 0.072 0.928 14 C -0.205 4.205 15 C -0.543 4.543 16 H 0.085 0.915 17 C -0.137 4.137 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.010 4.010 24 C -0.225 4.225 25 C -0.008 4.008 26 O -0.250 6.250 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.028 0.972 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.850 7.411 -9.374 12.896 hybrid contribution -1.414 0.029 0.352 1.458 sum -6.265 7.439 -9.023 13.266 Atomic orbital electron populations 1.21668 0.95657 1.01346 1.01578 1.21678 0.96290 0.95078 1.03459 1.22340 0.92769 0.94469 0.87566 0.92971 1.22514 0.95120 0.84984 0.99549 1.57641 1.45961 1.10532 1.69114 1.02033 0.73617 0.72549 0.73147 1.93508 1.74859 1.43365 1.86730 1.93566 1.72592 1.46677 1.83763 1.57685 1.84662 1.13796 1.26638 1.21218 1.00987 0.85238 0.96545 1.18694 0.95416 0.76730 0.92357 0.92791 1.22067 0.95418 1.03527 0.99447 1.21303 0.94986 1.00743 1.37265 0.91507 1.24842 0.97047 0.95784 0.96020 1.69878 1.34209 1.05367 1.43904 0.86658 0.85647 0.76668 0.79010 1.19798 1.21830 1.20739 1.21250 0.96900 0.84848 0.98035 1.22290 0.98603 0.99746 1.01818 1.21345 0.95837 0.83055 1.00565 1.87733 1.86746 1.20593 1.29893 0.91963 0.93674 0.92946 0.91105 0.89587 0.91749 0.88448 0.94099 0.93216 0.90197 0.94997 0.97167 0.88908 0.92948 0.89229 0.90936 0.89521 0.90241 0.90407 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.81 37.16 0.36 -1.50 16 2 C -0.13 -1.81 5.54 -26.73 -0.15 -1.95 16 3 C 0.09 1.29 2.32 -25.86 -0.06 1.23 16 4 H 0.05 0.64 7.20 -51.93 -0.37 0.26 16 5 C 0.10 1.66 5.87 -2.24 -0.01 1.65 16 6 N -1.00 -16.58 2.90 -112.52 -0.33 -16.90 16 7 S 2.78 56.19 5.95 -107.50 -0.64 55.55 16 8 O -1.00 -20.76 15.63 -57.17 -0.89 -21.65 16 9 O -0.98 -22.85 15.40 -57.17 -0.88 -23.73 16 10 N -0.99 -20.63 3.12 -115.85 -0.36 -20.99 16 11 C 0.11 1.92 8.32 59.85 0.50 2.42 16 12 C 0.27 6.59 2.62 -69.08 -0.18 6.40 16 13 H 0.05 1.47 6.91 -51.93 -0.36 1.11 16 14 C -0.14 -3.49 8.97 37.16 0.33 -3.16 16 15 C -0.50 -12.69 7.99 -34.44 -0.28 -12.97 16 16 H 0.07 1.67 7.33 -52.49 -0.38 1.29 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.53 11.32 55.43 0.63 -23.90 16 19 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.12 1.57 5.66 -4.14 -0.02 1.55 16 24 C -0.19 -2.37 6.04 -28.31 -0.17 -2.55 16 25 C 0.07 0.92 6.04 34.59 0.21 1.12 16 26 O -0.33 -5.59 9.38 -34.10 -0.32 -5.91 16 27 H 0.06 0.90 7.82 -51.93 -0.41 0.50 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.83 7.10 -51.93 -0.37 1.46 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.78 6.05 -51.93 -0.31 0.47 16 36 H 0.08 1.47 7.02 -51.93 -0.36 1.10 16 37 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 40 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.09 1.21 6.80 -51.93 -0.35 0.86 16 42 H 0.07 0.81 8.10 -51.93 -0.42 0.38 16 43 H 0.09 1.29 5.14 -51.93 -0.27 1.03 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.04 0.43 7.28 -51.93 -0.38 0.05 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -30.71 361.10 -9.58 -40.29 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.64 Total: 2.25 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 0.44 Total: -6.15 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.06 Total: -61.80 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -2.09 Total: -51.29 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 56.19 SS G_CDS: -0.64 Total: 55.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.71 -9.58 -40.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331990864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.994 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds