Wall clock time and date at job start Fri Apr 10 2020 18:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47588 * 2 1 4 4 H 1.09001 * 109.40898 * 305.16460 * 3 2 1 5 5 C 1.54665 * 109.41814 * 185.58816 * 3 2 1 6 6 N 1.48178 * 110.49102 * 200.68254 * 5 3 2 7 7 S 1.65604 * 118.51539 * 138.65174 * 6 5 3 8 8 O 1.42101 * 106.40024 * 156.19174 * 7 6 5 9 9 O 1.42097 * 106.39867 * 23.27884 * 7 6 5 10 10 N 1.65597 * 107.21894 * 269.73667 * 7 6 5 11 11 C 1.46500 * 120.00076 * 269.99600 * 10 7 6 12 12 C 1.46500 * 119.99996 * 90.00242 * 10 7 6 13 13 H 1.09002 * 109.47129 * 359.97438 * 12 10 7 14 14 C 1.52997 * 109.47473 * 119.99730 * 12 10 7 15 15 C 1.50708 * 109.47008 * 239.99898 * 12 10 7 16 16 H 1.08000 * 119.99723 * 359.97438 * 15 12 10 17 17 C 1.37873 * 119.99930 * 179.97438 * 15 12 10 18 18 N 1.31509 * 120.00195 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99968 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46680 * 60.00159 * 19 17 15 21 21 H 1.48492 * 109.47298 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46944 * 300.00675 * 19 17 15 23 23 C 1.44460 * 122.97138 * 318.37708 * 6 5 3 24 24 C 1.54881 * 109.32771 * 89.21568 * 23 6 5 25 25 C 1.47690 * 109.67846 * 290.10158 * 24 23 6 26 26 O 1.40529 * 109.40425 * 64.99907 * 3 2 1 27 27 H 1.09000 * 109.47045 * 300.00351 * 1 2 3 28 28 H 1.08998 * 109.46924 * 59.99728 * 1 2 3 29 29 H 1.08995 * 109.47487 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47045 * 239.99649 * 2 1 3 31 31 H 1.08998 * 109.46924 * 120.00272 * 2 1 3 32 32 H 1.08998 * 109.43454 * 80.36759 * 5 3 2 33 33 H 1.09001 * 109.23831 * 320.87108 * 5 3 2 34 34 H 1.08994 * 109.47032 * 270.00329 * 11 10 7 35 35 H 1.08998 * 109.46624 * 30.00124 * 11 10 7 36 36 H 1.08998 * 109.46783 * 149.99869 * 11 10 7 37 37 H 1.09002 * 109.47153 * 59.99757 * 14 12 10 38 38 H 1.09001 * 109.46832 * 299.99948 * 14 12 10 39 39 H 1.09004 * 109.47261 * 179.97438 * 14 12 10 40 40 H 0.97006 * 120.00358 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.49472 * 209.16579 * 23 6 5 42 42 H 1.08994 * 109.49479 * 329.25669 * 23 6 5 43 43 H 1.08997 * 109.43461 * 50.16272 * 24 23 6 44 44 H 1.08994 * 109.43855 * 170.03437 * 24 23 6 45 45 H 1.08992 * 108.64564 * 181.88258 * 25 24 23 46 46 H 1.09007 * 108.64362 * 299.72155 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6027 1.9813 -0.8404 5 6 3.5802 1.4432 -0.1420 6 7 4.1450 2.7254 0.3403 7 16 5.5337 2.6883 1.2417 8 8 6.1425 3.9637 1.0935 9 8 6.1907 1.4710 0.9164 10 7 5.0836 2.5667 2.8307 11 6 4.8600 3.7782 3.6235 12 6 4.9090 1.2476 3.4437 13 1 5.1172 0.4733 2.7052 14 6 5.8735 1.1012 4.6224 15 6 3.4911 1.1052 3.9341 16 1 2.7903 1.9164 3.8027 17 6 3.0887 -0.0605 4.5505 18 7 3.9422 -1.0481 4.7110 19 14 1.3314 -0.2368 5.1590 20 1 0.3950 -0.0939 4.0154 21 1 1.1544 -1.5738 5.7802 22 1 1.0480 0.8177 6.1655 23 6 3.5422 4.0068 0.0549 24 6 2.5130 4.3470 1.1612 25 6 1.3456 3.4496 1.0473 26 8 1.6677 2.0694 1.2013 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8479 1.3044 -1.1895 33 1 3.9955 0.6244 0.4455 34 1 5.7933 4.0778 4.1001 35 1 4.5111 4.5794 2.9720 36 1 4.1093 3.5786 4.3880 37 1 5.6650 1.8755 5.3607 38 1 6.8990 1.2042 4.2676 39 1 5.7433 0.1199 5.0787 40 1 3.6592 -1.8682 5.1450 41 1 4.3153 4.7748 0.0288 42 1 3.0380 3.9647 -0.9105 43 1 2.9760 4.2175 2.1394 44 1 2.1879 5.3812 1.0485 45 1 0.6185 3.7251 1.8111 46 1 0.8894 3.5938 0.0679 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331990864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:46 Heat of formation + Delta-G solvation = -136.382563 kcal Electronic energy + Delta-G solvation = -28996.901424 eV Core-core repulsion = 25240.941180 eV Total energy + Delta-G solvation = -3755.960245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.48072 -38.44007 -37.84053 -36.92527 -36.52025 -35.22253 -34.40531 -32.47617 -30.87185 -28.99005 -27.24398 -27.02235 -26.83855 -23.81744 -22.67201 -22.45968 -21.69862 -19.75218 -18.77075 -18.40975 -18.28970 -17.84008 -17.13763 -16.73671 -16.55613 -16.07241 -15.21183 -15.07285 -14.96895 -14.80431 -14.58656 -14.52530 -14.37219 -13.84241 -13.68860 -13.50214 -13.33981 -13.30783 -13.14831 -12.95966 -12.83284 -12.75440 -12.66192 -12.63263 -12.47760 -12.21222 -12.07456 -11.91971 -11.88286 -11.75549 -11.45172 -11.32345 -11.07919 -10.39681 -10.37367 -9.84879 -9.56701 -7.98603 -6.08209 -0.28591 1.47451 1.49886 1.56537 1.96042 2.52282 2.57656 3.06971 3.31295 3.36554 3.73051 3.86324 3.96832 4.11667 4.15865 4.22394 4.37195 4.43734 4.49289 4.57069 4.69841 4.71818 4.72305 4.80369 4.81633 4.87030 4.97549 4.98098 4.98978 5.06374 5.14240 5.17201 5.24879 5.28185 5.36451 5.40261 5.49486 5.64368 5.73996 5.85085 5.96136 6.18990 6.39149 6.71485 6.99924 7.59394 9.06327 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.008890 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.470761 B = 3148.685222 C = 4522.711232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.092 3.908 4 H 0.089 0.911 5 C 0.099 3.901 6 N -0.988 5.988 7 S 2.784 3.216 8 O -1.006 7.006 9 O -1.020 7.020 10 N -0.993 5.993 11 C 0.103 3.897 12 C 0.280 3.720 13 H 0.018 0.982 14 C -0.139 4.139 15 C -0.494 4.494 16 H 0.069 0.931 17 C 0.020 3.980 18 N -0.924 5.924 19 Si 0.947 3.053 20 H -0.270 1.270 21 H -0.296 1.296 22 H -0.275 1.275 23 C 0.107 3.893 24 C -0.183 4.183 25 C 0.061 3.939 26 O -0.369 6.369 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.014 0.986 39 H 0.070 0.930 40 H 0.258 0.742 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.115 0.885 45 H 0.079 0.921 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.744 9.757 -10.841 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.032 3.968 4 H 0.107 0.893 5 C -0.027 4.027 6 N -0.828 5.828 7 S 2.795 3.205 8 O -0.990 6.990 9 O -1.004 7.004 10 N -0.834 5.834 11 C -0.043 4.043 12 C 0.176 3.824 13 H 0.036 0.964 14 C -0.199 4.199 15 C -0.533 4.533 16 H 0.087 0.913 17 C -0.179 4.179 18 N -0.565 5.565 19 Si 0.775 3.225 20 H -0.195 1.195 21 H -0.222 1.222 22 H -0.201 1.201 23 C -0.018 4.018 24 C -0.222 4.222 25 C -0.016 4.016 26 O -0.287 6.287 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.133 0.867 45 H 0.098 0.902 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.864 9.555 -10.955 16.076 hybrid contribution -0.778 -0.570 0.777 1.238 sum -7.642 8.985 -10.179 15.580 Atomic orbital electron populations 1.21613 0.94295 1.01802 1.01888 1.21697 0.97447 0.95113 1.02388 1.22414 0.91391 0.94728 0.88226 0.89302 1.22657 0.96348 0.83453 1.00192 1.57380 1.45179 1.12134 1.68121 1.01607 0.74229 0.71617 0.73069 1.93490 1.75603 1.43148 1.86771 1.93513 1.74263 1.48411 1.84224 1.57579 1.85008 1.13299 1.27504 1.21382 1.01330 0.84762 0.96810 1.18305 0.95079 0.77664 0.91369 0.96435 1.21957 0.95746 1.02558 0.99605 1.21421 0.95306 1.00459 1.36149 0.91333 1.25493 1.00106 0.95712 0.96555 1.70013 1.35732 1.05748 1.44985 0.85771 0.81905 0.76364 0.78499 1.19519 1.22234 1.20059 1.21595 0.97264 0.82896 1.00040 1.22301 0.98082 1.01752 1.00101 1.21553 0.96154 0.81454 1.02399 1.87703 1.86881 1.22660 1.31425 0.93972 0.90868 0.92520 0.88906 0.94021 0.88945 0.92441 0.93403 0.90659 0.90699 0.93882 0.96698 0.91179 0.93271 0.89199 0.87440 0.92003 0.86698 0.90243 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.81 71.98 0.71 -2.57 16 2 C -0.13 -3.53 5.54 30.59 0.17 -3.36 16 3 C 0.09 2.49 2.32 31.16 0.07 2.56 16 4 H 0.09 1.74 7.20 -2.39 -0.02 1.73 16 5 C 0.10 3.06 5.87 86.62 0.51 3.57 16 6 N -0.99 -31.45 2.90 -509.92 -1.48 -32.93 16 7 S 2.78 112.60 5.95 -56.49 -0.34 112.26 16 8 O -1.01 -40.70 15.63 -128.00 -2.00 -42.70 16 9 O -1.02 -49.00 15.40 -128.00 -1.97 -50.98 16 10 N -0.99 -41.82 3.12 -520.45 -1.62 -43.44 16 11 C 0.10 3.62 8.32 127.77 1.06 4.68 16 12 C 0.28 14.03 2.62 44.25 0.12 14.15 16 13 H 0.02 1.02 6.91 -2.39 -0.02 1.01 16 14 C -0.14 -6.87 8.97 71.98 0.65 -6.23 16 15 C -0.49 -25.33 7.99 25.60 0.20 -25.12 16 16 H 0.07 3.45 7.33 -2.91 -0.02 3.43 16 17 C 0.02 1.05 5.30 84.65 0.45 1.50 16 18 N -0.92 -52.39 11.32 21.44 0.24 -52.15 16 19 Si 0.95 43.13 29.54 68.60 2.03 45.15 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 C 0.11 2.52 5.66 87.40 0.49 3.02 16 24 C -0.18 -4.06 6.04 29.57 0.18 -3.88 16 25 C 0.06 1.40 6.04 70.32 0.42 1.83 16 26 O -0.37 -11.76 9.38 -144.94 -1.36 -13.12 16 27 H 0.04 1.16 7.82 -2.39 -0.02 1.14 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.25 7.10 -2.39 -0.02 2.24 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 2.24 6.05 -2.39 -0.01 2.23 16 36 H 0.07 2.70 7.02 -2.39 -0.02 2.68 16 37 H 0.04 1.97 7.67 -2.39 -0.02 1.95 16 38 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 3.80 6.07 -2.38 -0.01 3.79 16 40 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 41 H 0.09 2.14 6.80 -2.39 -0.02 2.13 16 42 H 0.11 1.83 8.10 -2.39 -0.02 1.81 16 43 H 0.06 1.70 5.14 -2.39 -0.01 1.69 16 44 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.07 1.18 7.28 -2.38 -0.02 1.16 16 Total: -1.00 -68.55 361.10 -0.51 -69.06 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.96 Total: 18.70 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.03 Total: -9.87 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -2.86 Total: -128.51 kcal Atomic # 8 Polarization: -101.47 SS G_CDS: -5.33 Total: -106.80 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 112.60 SS G_CDS: -0.34 Total: 112.26 kcal Total: -68.55 -0.51 -69.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331990864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.319 kcal (2) G-P(sol) polarization free energy of solvation -68.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds