Wall clock time and date at job start Fri Apr 10 2020 18:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46916 * 2 1 4 4 C 1.53003 * 115.54812 * 297.71537 * 3 2 1 5 5 N 1.46494 * 109.46866 * 157.23314 * 4 3 2 6 6 S 1.65605 * 120.00004 * 129.69952 * 5 4 3 7 7 O 1.42098 * 106.40489 * 180.02562 * 6 5 4 8 8 O 1.42097 * 106.40315 * 312.96819 * 6 5 4 9 9 N 1.65604 * 107.21502 * 66.50788 * 6 5 4 10 10 C 1.46495 * 120.00105 * 83.09493 * 9 6 5 11 11 C 1.50706 * 109.46955 * 95.00046 * 10 9 6 12 12 H 1.08003 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99964 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00208 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99877 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47405 * 0.02562 * 15 13 11 17 17 H 1.48512 * 109.47187 * 119.99862 * 15 13 11 18 18 H 1.48499 * 109.47195 * 239.99871 * 15 13 11 19 19 C 1.46502 * 119.99800 * 263.09542 * 9 6 5 20 20 C 1.53001 * 109.47064 * 99.87729 * 19 9 6 21 21 O 1.42904 * 109.47041 * 67.01949 * 20 19 9 22 22 C 1.42897 * 113.99787 * 179.97438 * 21 20 19 23 23 C 1.52994 * 117.51620 * 83.41819 * 3 2 1 24 24 C 1.52993 * 60.00078 * 107.47772 * 23 3 2 25 25 H 1.09006 * 109.46569 * 185.58563 * 1 2 3 26 26 H 1.08998 * 109.46926 * 305.58355 * 1 2 3 27 27 H 1.08988 * 109.47249 * 65.58794 * 1 2 3 28 28 H 1.08997 * 109.46885 * 239.99595 * 2 1 3 29 29 H 1.08998 * 109.47122 * 120.00075 * 2 1 3 30 30 H 1.08995 * 109.47067 * 37.23536 * 4 3 2 31 31 H 1.08997 * 109.46445 * 277.23305 * 4 3 2 32 32 H 0.96999 * 120.00571 * 309.42653 * 5 4 3 33 33 H 1.09000 * 109.47305 * 214.99860 * 10 9 6 34 34 H 1.08997 * 109.47302 * 335.00449 * 10 9 6 35 35 H 0.97000 * 120.00184 * 180.02562 * 14 13 11 36 36 H 1.08994 * 109.47045 * 219.87861 * 19 9 6 37 37 H 1.08996 * 109.46948 * 339.88060 * 19 9 6 38 38 H 1.08999 * 109.47506 * 187.01999 * 20 19 9 39 39 H 1.09004 * 109.47584 * 307.02458 * 20 19 9 40 40 H 1.08999 * 109.47590 * 300.00200 * 22 21 20 41 41 H 1.09005 * 109.47456 * 60.00520 * 22 21 20 42 42 H 1.09004 * 109.47089 * 179.97438 * 22 21 20 43 43 H 1.09004 * 117.49681 * 214.96752 * 23 3 2 44 44 H 1.09003 * 117.50374 * 359.97438 * 23 3 2 45 45 H 1.08997 * 117.50019 * 252.50285 * 24 23 3 46 46 H 1.09010 * 117.49760 * 107.48478 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6546 2.2786 -1.2221 5 7 1.7094 3.7014 -0.8772 6 16 2.5419 4.7565 -1.8448 7 8 2.4073 6.0393 -1.2486 8 8 3.7995 4.1505 -2.1103 9 7 1.7423 4.8283 -3.2932 10 6 0.5842 5.7121 -3.4476 11 6 1.0296 7.0252 -4.0381 12 1 2.0711 7.1852 -4.2751 13 6 0.1075 8.0223 -4.2757 14 7 -1.1607 7.8274 -3.9876 15 14 0.6595 9.6496 -5.0083 16 1 2.1257 9.6156 -5.2413 17 1 -0.0411 9.8748 -6.2982 18 1 0.3326 10.7518 -4.0684 19 6 2.1931 4.0080 -4.4202 20 6 1.3097 2.7637 -4.5309 21 8 -0.0142 3.1511 -4.9041 22 6 -0.9243 2.0574 -5.0361 23 6 2.1290 2.1608 1.3479 24 6 3.4057 1.7089 0.6362 25 1 -0.3633 -1.0229 0.1000 26 1 -0.3633 0.5980 0.8358 27 1 -0.3633 0.4247 -0.9357 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 0.6434 2.0194 -1.5354 31 1 2.3507 2.0749 -2.0357 32 1 1.2547 4.0261 -0.0843 33 1 -0.1441 5.2444 -4.1099 34 1 0.1289 5.8879 -2.4730 35 1 -1.8095 8.5288 -4.1551 36 1 2.1232 4.5864 -5.3414 37 1 3.2278 3.7058 -4.2586 38 1 1.7190 2.0936 -5.2869 39 1 1.2808 2.2518 -3.5689 40 1 -0.5613 1.3730 -5.8028 41 1 -0.9996 1.5305 -4.0848 42 1 -1.9066 2.4345 -5.3208 43 1 1.9130 3.2291 1.3642 44 1 1.8238 1.6059 2.2351 45 1 3.9407 0.8567 1.0551 46 1 4.0297 2.4800 0.1841 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336898382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:58 Heat of formation + Delta-G solvation = -98.558162 kcal Electronic energy + Delta-G solvation = -27364.265063 eV Core-core repulsion = 23609.945008 eV Total energy + Delta-G solvation = -3754.320055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.99669 -37.79704 -36.57412 -35.31786 -35.14192 -33.78415 -32.46196 -32.01059 -29.49951 -26.74652 -26.57594 -25.63400 -23.75146 -22.83024 -22.44829 -21.75989 -19.08124 -18.80999 -17.45659 -16.90129 -16.44668 -16.11285 -15.91009 -15.77878 -15.51541 -14.92086 -14.55822 -14.33486 -14.02370 -13.89854 -13.57889 -13.30556 -12.76227 -12.53905 -12.32789 -12.18361 -11.99848 -11.88672 -11.68856 -11.61169 -11.47361 -11.39400 -11.28564 -11.22497 -11.00454 -10.96913 -10.80523 -10.59483 -10.35461 -10.28893 -9.95897 -9.79310 -9.65238 -9.31143 -9.21452 -8.33133 -7.98143 -5.95299 -3.97413 1.25274 3.37152 3.44241 3.47962 3.51863 3.69498 4.10320 4.16267 4.53306 4.54078 4.68662 4.76373 4.87232 5.02597 5.12650 5.26267 5.34330 5.35300 5.40306 5.44080 5.46518 5.53391 5.57304 5.62370 5.63446 5.68618 5.73549 5.78806 5.86418 5.90472 5.93276 6.03061 6.08300 6.16763 6.24032 6.37313 6.57039 7.16611 7.45460 7.50521 7.57346 7.81604 8.03352 8.34631 9.04528 9.66093 11.13421 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.004794 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.331834 B = 5838.777294 C = 6722.146791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 C -0.141 4.141 4 C 0.161 3.839 5 N -1.131 6.131 6 S 2.775 3.225 7 O -0.963 6.963 8 O -1.000 7.000 9 N -0.984 5.984 10 C 0.257 3.743 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.896 5.896 15 Si 0.894 3.106 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.120 3.880 20 C 0.038 3.962 21 O -0.364 6.364 22 C 0.031 3.969 23 C -0.171 4.171 24 C -0.171 4.171 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.413 0.587 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.261 0.739 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -18.280 5.380 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.120 4.120 3 C -0.142 4.142 4 C 0.034 3.966 5 N -0.890 5.890 6 S 2.783 3.217 7 O -0.947 6.947 8 O -0.983 6.983 9 N -0.826 5.826 10 C 0.136 3.864 11 C -0.562 4.562 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.536 5.536 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.007 4.007 20 C -0.041 4.041 21 O -0.282 6.282 22 C -0.066 4.066 23 C -0.208 4.208 24 C -0.208 4.208 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.247 0.753 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.448 -17.565 5.411 18.700 hybrid contribution -0.403 0.555 -0.089 0.691 sum 3.044 -17.010 5.322 18.081 Atomic orbital electron populations 1.21771 0.95396 1.01354 1.02400 1.21002 0.95957 0.92966 1.02090 1.21904 1.01279 0.96263 0.94794 1.20646 1.01366 0.79366 0.95214 1.56291 1.72669 1.18495 1.41517 1.02115 0.73388 0.72907 0.73274 1.93649 1.86375 1.37794 1.76875 1.93515 1.40537 1.78845 1.85452 1.57659 1.47049 1.53578 1.24307 1.19147 0.82051 0.87278 0.97962 1.21545 0.94563 0.98740 1.41321 0.92359 1.24892 0.94812 0.98543 0.95775 1.69938 1.01275 1.33744 1.48593 0.86511 0.78845 0.83845 0.78615 1.19745 1.21100 1.20984 1.21287 0.95991 0.90741 0.92657 1.23280 0.84567 0.97811 0.98435 1.88171 1.19385 1.30791 1.89839 1.22701 0.94432 0.90459 0.99057 1.23014 1.02168 1.00962 0.94704 1.23057 0.90553 1.03487 1.03656 0.92858 0.92462 0.92381 0.91443 0.91793 0.91099 0.89896 0.75289 0.92370 0.95380 0.92979 0.88838 0.88798 0.93134 0.93725 0.94829 0.94759 0.89858 0.88522 0.88968 0.88957 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.61 37.16 0.36 -0.88 16 2 C -0.08 -0.70 5.83 -26.73 -0.16 -0.85 16 3 C -0.14 -1.49 2.14 -154.51 -0.33 -1.82 16 4 C 0.16 1.99 5.15 -4.04 -0.02 1.97 16 5 N -1.13 -16.81 5.11 -10.62 -0.05 -16.86 16 6 S 2.78 54.32 6.00 -107.50 -0.65 53.68 16 7 O -0.96 -23.19 17.36 -57.17 -0.99 -24.18 16 8 O -1.00 -19.84 15.91 -57.17 -0.91 -20.75 16 9 N -0.98 -20.27 2.84 -115.67 -0.33 -20.59 16 10 C 0.26 6.51 4.98 -5.19 -0.03 6.48 16 11 C -0.52 -14.89 9.38 -34.44 -0.32 -15.21 16 12 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 14 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 15 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 19 C 0.12 2.08 6.16 -4.04 -0.02 2.05 16 20 C 0.04 0.55 6.27 37.16 0.23 0.78 16 21 O -0.36 -6.16 8.74 -35.23 -0.31 -6.47 16 22 C 0.03 0.38 11.01 101.05 1.11 1.49 16 23 C -0.17 -1.79 9.51 -26.74 -0.25 -2.05 16 24 C -0.17 -1.90 9.83 -26.74 -0.26 -2.16 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.49 6.86 -51.94 -0.36 0.13 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 30 H 0.07 0.81 6.22 -51.93 -0.32 0.49 16 31 H 0.08 1.03 6.29 -51.93 -0.33 0.70 16 32 H 0.41 5.62 7.08 -34.47 -0.24 5.37 16 33 H 0.06 1.53 6.25 -51.93 -0.32 1.21 16 34 H 0.03 0.76 7.80 -51.93 -0.40 0.36 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.09 1.46 6.77 -51.93 -0.35 1.11 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.57 4.90 -51.93 -0.25 0.32 16 40 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.10 1.07 6.09 -51.93 -0.32 0.75 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.10 1.32 8.14 -51.92 -0.42 0.89 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -34.41 377.50 -9.14 -43.55 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.52 Total: 3.03 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 0.21 Total: -8.51 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: 0.35 Total: -63.33 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -2.21 Total: -51.40 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 54.32 SS G_CDS: -0.65 Total: 53.68 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.41 -9.14 -43.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336898382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.008 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds