Wall clock time and date at job start Fri Apr 10 2020 18:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47280 * 2 1 4 4 H 1.08993 * 109.71046 * 305.49930 * 3 2 1 5 5 C 1.53716 * 109.74850 * 66.27238 * 3 2 1 6 6 O 1.42955 * 109.14834 * 172.16504 * 5 3 2 7 7 C 1.42966 * 114.16401 * 297.28709 * 6 5 3 8 8 H 1.08994 * 109.51547 * 302.65178 * 7 6 5 9 9 C 1.53006 * 109.50849 * 182.50332 * 7 6 5 10 10 C 1.53295 * 109.22277 * 62.58497 * 7 6 5 11 11 N 1.47149 * 109.67986 * 184.96416 * 3 2 1 12 12 S 1.65606 * 120.98585 * 9.76596 * 11 3 2 13 13 O 1.42093 * 106.40311 * 195.25319 * 12 11 3 14 14 O 1.42100 * 106.39665 * 328.16824 * 12 11 3 15 15 N 1.65593 * 107.21937 * 81.70853 * 12 11 3 16 16 C 1.46506 * 120.00017 * 263.77176 * 15 12 11 17 17 C 1.53000 * 109.46868 * 101.36214 * 16 15 12 18 18 C 1.46499 * 119.99995 * 83.77065 * 15 12 11 19 19 C 1.50699 * 109.46757 * 94.33471 * 18 15 12 20 20 H 1.07994 * 120.00411 * 359.97438 * 19 18 15 21 21 C 1.37884 * 119.99793 * 179.97438 * 19 18 15 22 22 N 1.31517 * 119.99784 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99941 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47073 * 90.00212 * 23 21 19 25 25 H 1.48501 * 109.46891 * 209.99780 * 23 21 19 26 26 H 1.48493 * 109.47116 * 329.99807 * 23 21 19 27 27 H 1.08991 * 109.46925 * 294.44761 * 1 2 3 28 28 H 1.09002 * 109.46585 * 54.44055 * 1 2 3 29 29 H 1.09000 * 109.47245 * 174.43865 * 1 2 3 30 30 H 1.08999 * 109.47362 * 239.99804 * 2 1 3 31 31 H 1.09009 * 109.46676 * 119.99885 * 2 1 3 32 32 H 1.09001 * 109.65229 * 52.19476 * 5 3 2 33 33 H 1.08998 * 109.48035 * 292.03109 * 5 3 2 34 34 H 1.08991 * 109.47550 * 300.25310 * 9 7 6 35 35 H 1.09007 * 109.46999 * 60.25740 * 9 7 6 36 36 H 1.09004 * 109.46683 * 180.25187 * 9 7 6 37 37 H 1.09005 * 109.68049 * 187.97337 * 10 7 6 38 38 H 1.08994 * 109.68480 * 67.42220 * 10 7 6 39 39 H 1.08995 * 109.46860 * 221.36138 * 16 15 12 40 40 H 1.09000 * 109.47094 * 341.36698 * 16 15 12 41 41 H 1.09005 * 109.47171 * 66.31397 * 17 16 15 42 42 H 1.09000 * 109.46831 * 186.30811 * 17 16 15 43 43 H 1.08994 * 109.47600 * 306.31106 * 17 16 15 44 44 H 1.09002 * 109.46874 * 214.33285 * 18 15 12 45 45 H 1.08999 * 109.47270 * 334.33015 * 18 15 12 46 46 H 0.97002 * 119.99814 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6009 1.9877 -0.8353 5 6 1.6644 2.1262 1.3245 6 8 2.2999 3.4051 1.3887 7 6 3.7285 3.3493 1.3899 8 1 4.0683 2.7397 2.2271 9 6 4.2950 4.7643 1.5237 10 6 4.2104 2.7272 0.0744 11 7 3.5067 1.4495 -0.1199 12 16 4.3401 0.0620 -0.4701 13 8 5.7025 0.3238 -0.1626 14 8 3.6037 -1.0057 0.1105 15 7 4.2641 -0.1549 -2.1100 16 6 3.2459 -1.0370 -2.6858 17 6 2.1009 -0.1937 -3.2503 18 6 5.2150 0.5353 -2.9850 19 6 6.3863 -0.3700 -3.2670 20 1 6.4194 -1.3602 -2.8372 21 6 7.4159 0.0659 -4.0739 22 7 7.3759 1.2719 -4.5970 23 14 8.8681 -1.0560 -4.4230 24 1 8.5893 -1.8632 -5.6379 25 1 10.0860 -0.2352 -4.6429 26 1 9.0836 -1.9612 -3.2658 27 1 -0.3633 0.4253 0.9355 28 1 -0.3632 0.5977 -0.8361 29 1 -0.3634 -1.0228 -0.0996 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.9967 1.5119 2.1613 33 1 0.5830 2.2540 1.3736 34 1 3.9526 5.3734 0.6873 35 1 3.9519 5.2061 2.4594 36 1 5.3842 4.7214 1.5201 37 1 5.2849 2.5507 0.1237 38 1 3.9860 3.3995 -0.7536 39 1 3.6892 -1.6298 -3.4858 40 1 2.8608 -1.7011 -1.9120 41 1 2.4620 0.3884 -4.0982 42 1 1.2937 -0.8493 -3.5770 43 1 1.7311 0.4806 -2.4778 44 1 4.7232 0.7958 -3.9222 45 1 5.5671 1.4430 -2.4948 46 1 8.1001 1.5784 -5.1650 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336921483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:04 Heat of formation + Delta-G solvation = -133.977177 kcal Electronic energy + Delta-G solvation = -28199.747581 eV Core-core repulsion = 24443.891642 eV Total energy + Delta-G solvation = -3755.855939 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66879 -38.77248 -37.76921 -36.94878 -36.50616 -34.85397 -34.70261 -32.45739 -31.50583 -28.56685 -28.52469 -27.09563 -25.04565 -24.81051 -23.20364 -22.60123 -22.04940 -19.84494 -18.92760 -18.47104 -18.02995 -17.88058 -17.33869 -16.85334 -16.39521 -16.12282 -15.68337 -15.62170 -15.30586 -15.00990 -14.74026 -14.59543 -14.12008 -13.78138 -13.76879 -13.58006 -13.38398 -13.34633 -13.20142 -13.10142 -13.08114 -12.82383 -12.75138 -12.69599 -12.28056 -12.21982 -12.21142 -12.13275 -12.01730 -11.79288 -11.71636 -11.42031 -11.31150 -10.99146 -10.61219 -9.93170 -9.72821 -8.22189 -6.33719 -0.40406 1.36653 1.38954 1.49590 1.90105 2.37194 2.50476 2.73052 3.08329 3.30445 3.52879 3.65994 3.88805 3.95620 4.01835 4.05694 4.21892 4.30354 4.41462 4.42000 4.45936 4.49081 4.63407 4.65324 4.69971 4.77613 4.83325 4.88923 4.97351 4.98676 5.09839 5.11767 5.12981 5.22957 5.28819 5.33088 5.35093 5.43682 5.53250 5.65763 5.69289 5.95895 6.09339 6.15107 6.73847 7.34890 8.85262 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015389 B = 0.005350 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.093412 B = 5232.707955 C = 6215.285163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.162 4.162 3 C 0.118 3.882 4 H 0.090 0.910 5 C 0.057 3.943 6 O -0.382 6.382 7 C 0.080 3.920 8 H 0.060 0.940 9 C -0.140 4.140 10 C 0.084 3.916 11 N -1.006 6.006 12 S 2.785 3.215 13 O -1.012 7.012 14 O -0.992 6.992 15 N -0.997 5.997 16 C 0.106 3.894 17 C -0.165 4.165 18 C 0.279 3.721 19 C -0.547 4.547 20 H 0.049 0.951 21 C 0.014 3.986 22 N -0.923 5.923 23 Si 0.955 3.045 24 H -0.265 1.265 25 H -0.277 1.277 26 H -0.276 1.276 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.134 0.866 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.027 0.973 45 H 0.010 0.990 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.333 3.310 9.584 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.201 4.201 3 C 0.013 3.987 4 H 0.108 0.892 5 C -0.021 4.021 6 O -0.300 6.300 7 C 0.020 3.980 8 H 0.078 0.922 9 C -0.198 4.198 10 C -0.041 4.041 11 N -0.847 5.847 12 S 2.797 3.203 13 O -0.996 6.996 14 O -0.976 6.976 15 N -0.837 5.837 16 C -0.019 4.019 17 C -0.223 4.223 18 C 0.155 3.845 19 C -0.586 4.586 20 H 0.067 0.933 21 C -0.186 4.186 22 N -0.563 5.563 23 Si 0.779 3.221 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.201 1.201 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.028 0.972 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.866 3.016 10.081 18.213 hybrid contribution 1.331 -0.540 -0.832 1.660 sum -13.536 2.476 9.249 16.580 Atomic orbital electron populations 1.21766 0.92181 1.03035 1.03111 1.22599 0.99066 0.93175 1.05212 1.22107 0.77742 0.98617 1.00263 0.89236 1.23235 0.99643 0.84365 0.94888 1.87913 1.18585 1.29065 1.94485 1.22470 0.81598 0.98991 0.94937 0.92187 1.21756 1.01332 0.92846 1.03865 1.22293 0.97329 0.84759 0.99768 1.58320 1.16413 1.24027 1.85932 1.01709 0.71949 0.73457 0.73215 1.93530 1.35926 1.85787 1.84325 1.93596 1.72291 1.55004 1.76722 1.57688 1.42622 1.58443 1.24964 1.21439 0.88254 0.92644 0.99554 1.22254 0.97851 1.00853 1.01378 1.18481 0.85881 0.90666 0.89433 1.21798 1.05778 1.01276 1.29790 0.93315 1.25712 1.00728 0.96679 0.95453 1.70005 1.34207 1.18466 1.33579 0.85609 0.78878 0.78916 0.78647 1.19014 1.20212 1.20126 0.90969 0.91413 0.91536 0.90942 0.89736 0.92720 0.84786 0.91225 0.90184 0.89950 0.89653 0.90227 0.91120 0.88997 0.93396 0.89072 0.91764 0.95540 0.97211 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.58 71.98 0.69 -1.60 16 2 C -0.16 -3.93 3.17 30.59 0.10 -3.83 16 3 C 0.12 2.94 2.67 45.11 0.12 3.06 16 4 H 0.09 2.07 7.72 -2.39 -0.02 2.05 16 5 C 0.06 1.20 5.89 72.22 0.43 1.62 16 6 O -0.38 -9.27 10.38 -148.98 -1.55 -10.82 16 7 C 0.08 1.99 3.40 30.70 0.10 2.09 16 8 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 9 C -0.14 -2.75 9.57 71.98 0.69 -2.06 16 10 C 0.08 2.59 6.01 86.35 0.52 3.11 16 11 N -1.01 -32.42 3.39 -488.66 -1.66 -34.08 16 12 S 2.78 113.47 5.65 -56.49 -0.32 113.15 16 13 O -1.01 -50.57 15.81 -128.00 -2.02 -52.59 16 14 O -0.99 -38.95 11.92 -128.00 -1.53 -40.48 16 15 N -1.00 -41.94 2.84 -519.84 -1.48 -43.42 16 16 C 0.11 3.64 5.64 86.38 0.49 4.13 16 17 C -0.16 -4.45 9.50 71.98 0.68 -3.76 16 18 C 0.28 14.32 5.05 85.63 0.43 14.75 16 19 C -0.55 -31.42 9.39 25.60 0.24 -31.18 16 20 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 21 C 0.01 0.79 5.46 84.66 0.46 1.25 16 22 N -0.92 -54.20 13.29 21.45 0.28 -53.92 16 23 Si 0.95 45.04 29.54 68.60 2.03 47.07 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 27 H 0.07 0.90 7.09 -2.39 -0.02 0.88 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.96 2.35 -2.39 -0.01 1.96 16 31 H 0.08 2.36 6.50 -2.38 -0.02 2.34 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.13 1.97 7.18 -2.39 -0.02 1.95 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.09 2.97 6.80 -2.38 -0.02 2.95 16 38 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.09 2.90 5.81 -2.39 -0.01 2.89 16 41 H 0.05 1.43 7.78 -2.38 -0.02 1.41 16 42 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 1.59 5.53 -2.39 -0.01 1.58 16 44 H 0.03 1.39 7.71 -2.39 -0.02 1.37 16 45 H 0.01 0.55 7.80 -2.39 -0.02 0.53 16 46 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -70.51 359.28 -0.33 -70.84 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.96 Total: 16.66 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 4.95 Total: -12.41 kcal Atomic # 7 Polarization: -128.57 SS G_CDS: -2.85 Total: -131.42 kcal Atomic # 8 Polarization: -98.79 SS G_CDS: -5.10 Total: -103.89 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 113.47 SS G_CDS: -0.32 Total: 113.15 kcal Total: -70.51 -0.33 -70.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336921483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.136 kcal (2) G-P(sol) polarization free energy of solvation -70.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds