Wall clock time and date at job start Fri Apr 10 2020 18:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47210 * 2 1 4 4 H 1.08992 * 109.71186 * 54.46024 * 3 2 1 5 5 C 1.53293 * 109.68434 * 175.00173 * 3 2 1 6 6 O 1.42965 * 109.22407 * 67.41437 * 5 3 2 7 7 C 1.42956 * 114.16423 * 62.58570 * 6 5 3 8 8 H 1.09002 * 109.51901 * 57.39338 * 7 6 5 9 9 C 1.53006 * 109.51163 * 177.49587 * 7 6 5 10 10 C 1.53299 * 109.22214 * 297.41711 * 7 6 5 11 11 N 1.47147 * 108.38403 * 52.30626 * 10 7 6 12 12 S 1.65597 * 120.98216 * 129.49060 * 11 10 7 13 13 O 1.42106 * 106.39941 * 203.53905 * 12 11 10 14 14 O 1.42099 * 106.40178 * 336.45443 * 12 11 10 15 15 N 1.65599 * 107.22288 * 89.99765 * 12 11 10 16 16 C 1.46499 * 119.99695 * 269.99936 * 15 12 11 17 17 C 1.53004 * 109.46985 * 95.00115 * 16 15 12 18 18 C 1.46493 * 119.99958 * 89.99604 * 15 12 11 19 19 C 1.50703 * 109.46999 * 95.00491 * 18 15 12 20 20 H 1.07994 * 119.99962 * 359.97438 * 19 18 15 21 21 C 1.37879 * 120.00009 * 180.02562 * 19 18 15 22 22 N 1.31519 * 120.00071 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00064 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46936 * 89.99474 * 23 21 19 25 25 H 1.48500 * 109.47095 * 209.99563 * 23 21 19 26 26 H 1.48494 * 109.46573 * 329.99505 * 23 21 19 27 27 H 1.08997 * 109.46860 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47109 * 300.00428 * 1 2 3 29 29 H 1.08997 * 109.46902 * 60.00624 * 1 2 3 30 30 H 1.08998 * 109.47109 * 239.99572 * 2 1 3 31 31 H 1.09005 * 109.46743 * 119.99706 * 2 1 3 32 32 H 1.08997 * 109.51158 * 307.49364 * 5 3 2 33 33 H 1.08998 * 109.51442 * 187.34412 * 5 3 2 34 34 H 1.08988 * 109.47132 * 59.99643 * 9 7 6 35 35 H 1.08997 * 109.46787 * 180.02562 * 9 7 6 36 36 H 1.08997 * 109.46764 * 299.99370 * 9 7 6 37 37 H 1.09006 * 109.68049 * 172.02969 * 10 7 6 38 38 H 1.08995 * 109.68020 * 292.54099 * 10 7 6 39 39 H 1.08999 * 109.46930 * 214.99722 * 16 15 12 40 40 H 1.09000 * 109.47386 * 334.99765 * 16 15 12 41 41 H 1.09000 * 109.47345 * 59.99625 * 17 16 15 42 42 H 1.08996 * 109.46669 * 180.02562 * 17 16 15 43 43 H 1.08999 * 109.46966 * 299.99585 * 17 16 15 44 44 H 1.09002 * 109.47345 * 215.00407 * 18 15 12 45 45 H 1.09001 * 109.47791 * 335.00402 * 18 15 12 46 46 H 0.97003 * 120.00000 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6003 1.9878 0.8349 5 6 3.5678 1.4499 0.1258 6 8 4.1406 0.8978 -1.0621 7 6 3.8590 1.6435 -2.2488 8 1 4.2104 2.6681 -2.1271 9 6 4.5705 0.9972 -3.4393 10 6 2.3461 1.6459 -2.4963 11 7 1.6755 2.0970 -1.2666 12 16 0.5434 3.3049 -1.3070 13 8 0.5096 3.8669 -0.0022 14 8 0.8125 4.0680 -2.4751 15 7 -0.9302 2.5881 -1.5458 16 6 -1.4282 2.3732 -2.9066 17 6 -1.0740 0.9559 -3.3614 18 6 -1.7356 2.1689 -0.3962 19 6 -2.7224 3.2545 -0.0516 20 1 -2.7468 4.1657 -0.6307 21 6 -3.5934 3.0848 1.0037 22 7 -3.5634 1.9753 1.7093 23 14 -4.8161 4.4308 1.4313 24 1 -6.0772 4.2114 0.6784 25 1 -5.0979 4.3988 2.8890 26 1 -4.2452 5.7522 1.0664 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8652 0.8503 0.9860 33 1 3.9173 2.4740 0.2565 34 1 4.2173 -0.0266 -3.5615 35 1 4.3557 1.5666 -4.3436 36 1 5.6457 0.9919 -3.2607 37 1 2.1090 2.3261 -3.3144 38 1 2.0137 0.6389 -2.7482 39 1 -2.5107 2.4996 -2.9215 40 1 -0.9686 3.0965 -3.5802 41 1 -1.5336 0.2326 -2.6878 42 1 -1.4442 0.7962 -4.3741 43 1 0.0085 0.8294 -3.3465 44 1 -2.2738 1.2540 -0.6439 45 1 -1.0831 1.9866 0.4577 46 1 -4.1765 1.8558 2.4515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336921485.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:10 Heat of formation + Delta-G solvation = -117.776110 kcal Electronic energy + Delta-G solvation = -28536.033112 eV Core-core repulsion = 24780.879704 eV Total energy + Delta-G solvation = -3755.153408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.66581 -36.80283 -36.35918 -35.31297 -35.20305 -33.50860 -32.67406 -31.27017 -29.97635 -28.17093 -26.62726 -25.83666 -23.83983 -22.94377 -22.15970 -21.56524 -19.91436 -18.40101 -17.60866 -16.80443 -16.65526 -16.33373 -15.79464 -15.36119 -15.10057 -14.77418 -14.51231 -14.08308 -13.83171 -13.68557 -13.30820 -13.01051 -12.79346 -12.47321 -12.22055 -12.20510 -12.13357 -11.99771 -11.79264 -11.72960 -11.68548 -11.44616 -11.25608 -11.09425 -10.97623 -10.88956 -10.80791 -10.61009 -10.49513 -10.35340 -10.09954 -10.03417 -9.93989 -9.59833 -8.64380 -8.42728 -8.04851 -6.06552 -4.09863 1.13320 3.30660 3.36026 3.37375 3.43588 3.69626 4.02122 4.44312 4.59992 4.80092 4.85238 4.97266 5.09716 5.13035 5.27159 5.29317 5.36921 5.39308 5.52323 5.54903 5.58355 5.65317 5.65802 5.71626 5.73672 5.82286 5.89612 5.98803 6.01055 6.16380 6.22159 6.29357 6.38146 6.53207 6.56704 6.64313 6.75002 6.91043 7.15388 7.25845 7.42711 7.62910 7.90986 8.22066 8.91983 9.55069 11.01529 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.005073 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.069236 B = 5518.155745 C = 5785.658199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.124 4.124 3 C 0.114 3.886 4 H 0.111 0.889 5 C 0.059 3.941 6 O -0.375 6.375 7 C 0.076 3.924 8 H 0.061 0.939 9 C -0.143 4.143 10 C 0.091 3.909 11 N -1.007 6.007 12 S 2.776 3.224 13 O -0.961 6.961 14 O -0.997 6.997 15 N -0.989 5.989 16 C 0.117 3.883 17 C -0.173 4.173 18 C 0.253 3.747 19 C -0.530 4.530 20 H 0.058 0.942 21 C 0.064 3.936 22 N -0.894 5.894 23 Si 0.894 3.106 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.036 0.964 45 H 0.047 0.953 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.146 -5.671 -8.223 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.163 4.163 3 C 0.007 3.993 4 H 0.129 0.871 5 C -0.019 4.019 6 O -0.293 6.293 7 C 0.017 3.983 8 H 0.079 0.921 9 C -0.201 4.201 10 C -0.035 4.035 11 N -0.845 5.845 12 S 2.787 3.213 13 O -0.945 6.945 14 O -0.981 6.981 15 N -0.831 5.831 16 C -0.010 4.010 17 C -0.232 4.232 18 C 0.132 3.868 19 C -0.570 4.570 20 H 0.076 0.924 21 C -0.138 4.138 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.198 1.198 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.307 -4.968 -7.961 16.283 hybrid contribution -1.114 0.461 0.351 1.256 sum 12.193 -4.507 -7.610 15.063 Atomic orbital electron populations 1.22478 0.94294 1.02232 1.04448 1.21773 0.97291 0.95077 1.02129 1.21770 0.95875 0.95180 0.86462 0.87131 1.22923 0.91906 0.99191 0.87885 1.87902 1.74187 1.52169 1.15083 1.22396 0.93918 0.95637 0.86359 0.92078 1.21729 1.00844 1.01619 0.95860 1.22068 0.92857 1.01486 0.87068 1.58624 1.56769 1.56597 1.12486 1.02121 0.72592 0.73461 0.73152 1.93613 1.86280 1.75037 1.39583 1.93500 1.85315 1.68040 1.51247 1.57801 1.34101 1.78301 1.12873 1.21145 1.01703 0.95647 0.82494 1.22319 1.01134 0.98691 1.01026 1.19375 0.90394 0.95794 0.81254 1.21551 1.17764 1.03068 1.14591 0.92384 1.24894 0.97406 0.95756 0.95781 1.69910 1.38009 1.25359 1.20084 0.86557 0.81198 0.82477 0.77594 1.20672 1.21086 1.19784 0.93128 0.90930 0.90558 0.91589 0.91450 0.87828 0.92782 0.91609 0.90839 0.91678 0.88517 0.90788 0.89711 0.90747 0.91815 0.92239 0.93252 0.94585 0.93503 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 8.10 37.16 0.30 -2.57 16 2 C -0.12 -1.67 5.34 -26.73 -0.14 -1.82 16 3 C 0.11 1.65 2.68 -67.42 -0.18 1.47 16 4 H 0.11 1.80 6.95 -51.93 -0.36 1.44 16 5 C 0.06 0.73 6.36 37.31 0.24 0.96 16 6 O -0.37 -4.70 10.12 -35.23 -0.36 -5.06 16 7 C 0.08 0.88 3.40 -26.57 -0.09 0.79 16 8 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 9 C -0.14 -1.25 9.57 37.16 0.36 -0.89 16 10 C 0.09 1.16 4.73 -3.53 -0.02 1.14 16 11 N -1.01 -15.61 2.61 -106.03 -0.28 -15.89 16 12 S 2.78 55.26 6.09 -107.50 -0.66 54.60 16 13 O -0.96 -22.79 15.73 -57.17 -0.90 -23.69 16 14 O -1.00 -20.59 15.31 -57.17 -0.88 -21.47 16 15 N -0.99 -19.92 1.83 -115.66 -0.21 -20.14 16 16 C 0.12 1.98 6.40 -4.04 -0.03 1.95 16 17 C -0.17 -2.36 9.36 37.16 0.35 -2.01 16 18 C 0.25 6.04 2.75 -5.20 -0.01 6.03 16 19 C -0.53 -14.59 9.38 -34.44 -0.32 -14.92 16 20 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 23 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.37 6.31 -51.93 -0.33 1.04 16 29 H 0.08 1.28 3.02 -51.93 -0.16 1.12 16 30 H 0.07 0.86 7.12 -51.93 -0.37 0.49 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.55 8.14 -51.94 -0.42 0.13 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 1.22 6.95 -51.93 -0.36 0.86 16 38 H 0.07 0.86 6.71 -51.93 -0.35 0.51 16 39 H 0.08 1.49 8.11 -51.93 -0.42 1.06 16 40 H 0.07 1.21 6.91 -51.93 -0.36 0.85 16 41 H 0.06 0.93 7.58 -51.93 -0.39 0.54 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.62 6.37 -51.93 -0.33 0.29 16 44 H 0.04 0.88 7.67 -51.93 -0.40 0.48 16 45 H 0.05 1.18 5.03 -51.93 -0.26 0.92 16 46 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -32.03 357.48 -9.26 -41.29 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.44 Total: 1.14 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 0.35 Total: -8.18 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.25 Total: -60.69 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -2.13 Total: -50.21 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 55.26 SS G_CDS: -0.66 Total: 54.60 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.03 -9.26 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336921485.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.489 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds