Wall clock time and date at job start Fri Apr 10 2020 18:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47210 * 2 1 4 4 H 1.08992 * 109.71186 * 54.46024 * 3 2 1 5 5 C 1.53293 * 109.68434 * 175.00173 * 3 2 1 6 6 O 1.42965 * 109.22407 * 67.41437 * 5 3 2 7 7 C 1.42956 * 114.16423 * 62.58570 * 6 5 3 8 8 H 1.09002 * 109.51901 * 57.39338 * 7 6 5 9 9 C 1.53006 * 109.51163 * 177.49587 * 7 6 5 10 10 C 1.53299 * 109.22214 * 297.41711 * 7 6 5 11 11 N 1.47147 * 108.38403 * 52.30626 * 10 7 6 12 12 S 1.65597 * 120.98216 * 129.49060 * 11 10 7 13 13 O 1.42106 * 106.39941 * 203.53905 * 12 11 10 14 14 O 1.42099 * 106.40178 * 336.45443 * 12 11 10 15 15 N 1.65599 * 107.22288 * 89.99765 * 12 11 10 16 16 C 1.46499 * 119.99695 * 269.99936 * 15 12 11 17 17 C 1.53004 * 109.46985 * 95.00115 * 16 15 12 18 18 C 1.46493 * 119.99958 * 89.99604 * 15 12 11 19 19 C 1.50703 * 109.46999 * 95.00491 * 18 15 12 20 20 H 1.07994 * 119.99962 * 359.97438 * 19 18 15 21 21 C 1.37879 * 120.00009 * 180.02562 * 19 18 15 22 22 N 1.31519 * 120.00071 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00064 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46936 * 89.99474 * 23 21 19 25 25 H 1.48500 * 109.47095 * 209.99563 * 23 21 19 26 26 H 1.48494 * 109.46573 * 329.99505 * 23 21 19 27 27 H 1.08997 * 109.46860 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47109 * 300.00428 * 1 2 3 29 29 H 1.08997 * 109.46902 * 60.00624 * 1 2 3 30 30 H 1.08998 * 109.47109 * 239.99572 * 2 1 3 31 31 H 1.09005 * 109.46743 * 119.99706 * 2 1 3 32 32 H 1.08997 * 109.51158 * 307.49364 * 5 3 2 33 33 H 1.08998 * 109.51442 * 187.34412 * 5 3 2 34 34 H 1.08988 * 109.47132 * 59.99643 * 9 7 6 35 35 H 1.08997 * 109.46787 * 180.02562 * 9 7 6 36 36 H 1.08997 * 109.46764 * 299.99370 * 9 7 6 37 37 H 1.09006 * 109.68049 * 172.02969 * 10 7 6 38 38 H 1.08995 * 109.68020 * 292.54099 * 10 7 6 39 39 H 1.08999 * 109.46930 * 214.99722 * 16 15 12 40 40 H 1.09000 * 109.47386 * 334.99765 * 16 15 12 41 41 H 1.09000 * 109.47345 * 59.99625 * 17 16 15 42 42 H 1.08996 * 109.46669 * 180.02562 * 17 16 15 43 43 H 1.08999 * 109.46966 * 299.99585 * 17 16 15 44 44 H 1.09002 * 109.47345 * 215.00407 * 18 15 12 45 45 H 1.09001 * 109.47791 * 335.00402 * 18 15 12 46 46 H 0.97003 * 120.00000 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6003 1.9878 0.8349 5 6 3.5678 1.4499 0.1258 6 8 4.1406 0.8978 -1.0621 7 6 3.8590 1.6435 -2.2488 8 1 4.2104 2.6681 -2.1271 9 6 4.5705 0.9972 -3.4393 10 6 2.3461 1.6459 -2.4963 11 7 1.6755 2.0970 -1.2666 12 16 0.5434 3.3049 -1.3070 13 8 0.5096 3.8669 -0.0022 14 8 0.8125 4.0680 -2.4751 15 7 -0.9302 2.5881 -1.5458 16 6 -1.4282 2.3732 -2.9066 17 6 -1.0740 0.9559 -3.3614 18 6 -1.7356 2.1689 -0.3962 19 6 -2.7224 3.2545 -0.0516 20 1 -2.7468 4.1657 -0.6307 21 6 -3.5934 3.0848 1.0037 22 7 -3.5634 1.9753 1.7093 23 14 -4.8161 4.4308 1.4313 24 1 -6.0772 4.2114 0.6784 25 1 -5.0979 4.3988 2.8890 26 1 -4.2452 5.7522 1.0664 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8652 0.8503 0.9860 33 1 3.9173 2.4740 0.2565 34 1 4.2173 -0.0266 -3.5615 35 1 4.3557 1.5666 -4.3436 36 1 5.6457 0.9919 -3.2607 37 1 2.1090 2.3261 -3.3144 38 1 2.0137 0.6389 -2.7482 39 1 -2.5107 2.4996 -2.9215 40 1 -0.9686 3.0965 -3.5802 41 1 -1.5336 0.2326 -2.6878 42 1 -1.4442 0.7962 -4.3741 43 1 0.0085 0.8294 -3.3465 44 1 -2.2738 1.2540 -0.6439 45 1 -1.0831 1.9866 0.4577 46 1 -4.1765 1.8558 2.4515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336921485.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:10 Heat of formation + Delta-G solvation = -139.871353 kcal Electronic energy + Delta-G solvation = -28536.991234 eV Core-core repulsion = 24780.879704 eV Total energy + Delta-G solvation = -3756.111530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.70580 -38.45827 -37.91729 -36.91458 -36.46035 -34.71633 -34.51996 -32.37448 -31.47735 -29.22163 -28.48176 -26.85949 -25.31989 -24.32211 -23.39527 -22.87625 -21.13488 -19.74099 -19.17935 -18.38735 -18.32815 -17.73323 -17.15066 -16.71475 -16.37531 -16.16678 -15.72685 -15.46652 -15.35817 -14.79760 -14.71103 -14.56636 -13.97738 -13.85122 -13.66252 -13.52448 -13.38343 -13.26027 -13.14059 -13.11276 -12.91903 -12.83040 -12.77062 -12.70675 -12.62514 -12.34221 -12.23321 -12.12786 -11.84008 -11.72213 -11.52980 -11.45292 -11.30363 -11.09932 -10.54611 -9.85413 -9.67906 -8.18534 -6.29203 -0.41742 1.36750 1.39075 1.49103 1.93190 2.38435 2.51527 2.79056 3.11834 3.27439 3.63972 3.76228 3.96080 3.99777 4.03777 4.12399 4.30269 4.30679 4.43934 4.46050 4.53392 4.53763 4.65160 4.68332 4.72973 4.78102 4.89282 4.98636 5.00824 5.03404 5.08950 5.15353 5.19129 5.25573 5.32624 5.38653 5.43320 5.50510 5.54649 5.66633 5.76010 6.00356 6.16382 6.20823 6.78254 7.38712 8.87905 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.005073 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.069236 B = 5518.155745 C = 5785.658199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.112 4.112 3 C 0.107 3.893 4 H 0.085 0.915 5 C 0.064 3.936 6 O -0.375 6.375 7 C 0.073 3.927 8 H 0.056 0.944 9 C -0.137 4.137 10 C 0.085 3.915 11 N -0.998 5.998 12 S 2.785 3.215 13 O -1.008 7.008 14 O -1.008 7.008 15 N -0.995 5.995 16 C 0.108 3.892 17 C -0.163 4.163 18 C 0.276 3.724 19 C -0.553 4.553 20 H 0.045 0.955 21 C 0.018 3.982 22 N -0.918 5.918 23 Si 0.949 3.051 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.278 1.278 27 H 0.059 0.941 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.028 0.972 45 H 0.032 0.968 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.382 -6.833 -9.550 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.151 4.151 3 C 0.001 3.999 4 H 0.103 0.897 5 C -0.015 4.015 6 O -0.294 6.294 7 C 0.014 3.986 8 H 0.074 0.926 9 C -0.195 4.195 10 C -0.040 4.040 11 N -0.839 5.839 12 S 2.797 3.203 13 O -0.992 6.992 14 O -0.992 6.992 15 N -0.836 5.836 16 C -0.018 4.018 17 C -0.222 4.222 18 C 0.153 3.847 19 C -0.593 4.593 20 H 0.063 0.937 21 C -0.182 4.182 22 N -0.558 5.558 23 Si 0.774 3.226 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.203 1.203 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.147 0.853 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.050 0.950 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.536 -6.126 -9.319 18.321 hybrid contribution -1.449 0.819 0.719 1.813 sum 13.087 -5.307 -8.599 16.534 Atomic orbital electron populations 1.22393 0.96469 1.02087 1.02313 1.21706 0.95070 0.94563 1.03770 1.21922 0.97655 0.95217 0.85081 0.89693 1.22957 0.89752 0.99869 0.88908 1.87916 1.73935 1.52297 1.15242 1.22552 0.93065 0.95882 0.87145 0.92639 1.21736 1.00870 1.01931 0.94944 1.22394 0.93602 1.02356 0.85658 1.58253 1.55569 1.55937 1.14171 1.01565 0.72905 0.73928 0.71926 1.93547 1.87011 1.76756 1.41838 1.93472 1.85512 1.68970 1.51207 1.57699 1.34343 1.78322 1.13191 1.21377 1.01090 0.98233 0.81052 1.22230 1.02034 0.95723 1.02183 1.18880 0.89588 0.94224 0.82048 1.21919 1.18959 1.03561 1.14834 0.93687 1.25624 0.99062 0.97789 0.95755 1.69993 1.38716 1.26640 1.20418 0.85699 0.79532 0.79599 0.77736 1.19204 1.20335 1.20309 0.92181 0.94432 0.91373 0.90053 0.89488 0.85261 0.92981 0.90931 0.89331 0.90995 0.88302 0.88942 0.90905 0.89958 0.92920 0.89341 0.91916 0.95446 0.95015 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.68 8.10 71.98 0.58 -5.09 16 2 C -0.11 -2.86 5.34 30.59 0.16 -2.70 16 3 C 0.11 3.05 2.68 44.96 0.12 3.17 16 4 H 0.09 2.88 6.95 -2.39 -0.02 2.86 16 5 C 0.06 1.44 6.36 72.08 0.46 1.90 16 6 O -0.38 -8.34 10.12 -148.98 -1.51 -9.84 16 7 C 0.07 1.50 3.40 30.70 0.10 1.60 16 8 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 9 C -0.14 -1.92 9.57 71.98 0.69 -1.23 16 10 C 0.08 1.97 4.73 86.36 0.41 2.37 16 11 N -1.00 -30.29 2.61 -489.38 -1.28 -31.56 16 12 S 2.79 112.75 6.09 -56.49 -0.34 112.41 16 13 O -1.01 -49.80 15.73 -128.00 -2.01 -51.81 16 14 O -1.01 -41.59 15.31 -128.00 -1.96 -43.55 16 15 N -0.99 -40.89 1.83 -519.85 -0.95 -41.84 16 16 C 0.11 3.64 6.40 86.38 0.55 4.19 16 17 C -0.16 -4.18 9.36 71.98 0.67 -3.51 16 18 C 0.28 13.63 2.75 85.64 0.24 13.87 16 19 C -0.55 -31.41 9.38 25.60 0.24 -31.17 16 20 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 21 C 0.02 0.99 5.46 84.65 0.46 1.46 16 22 N -0.92 -53.16 13.29 21.45 0.28 -52.87 16 23 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.47 6.31 -2.39 -0.02 1.45 16 29 H 0.07 2.30 3.02 -2.39 -0.01 2.29 16 30 H 0.08 1.86 7.12 -2.39 -0.02 1.84 16 31 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 2.27 6.95 -2.38 -0.02 2.26 16 38 H 0.09 1.83 6.71 -2.39 -0.02 1.81 16 39 H 0.07 2.59 8.11 -2.39 -0.02 2.57 16 40 H 0.08 2.62 6.91 -2.39 -0.02 2.61 16 41 H 0.05 1.48 7.58 -2.39 -0.02 1.46 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 1.42 6.37 -2.39 -0.02 1.41 16 44 H 0.03 1.39 7.67 -2.39 -0.02 1.37 16 45 H 0.03 1.68 5.03 -2.39 -0.01 1.67 16 46 H 0.27 14.56 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -70.31 357.48 -0.08 -70.39 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.96 Total: 16.87 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 4.69 Total: -15.14 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -1.94 Total: -126.27 kcal Atomic # 8 Polarization: -99.73 SS G_CDS: -5.48 Total: -105.21 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 112.75 SS G_CDS: -0.34 Total: 112.41 kcal Total: -70.31 -0.08 -70.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336921485.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.483 kcal (2) G-P(sol) polarization free energy of solvation -70.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds