Wall clock time and date at job start Fri Apr 10 2020 18:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46498 * 109.47064 * 2 1 4 4 C 1.46503 * 119.99836 * 86.25164 * 3 2 1 5 5 C 1.50707 * 109.46887 * 274.35145 * 4 3 2 6 6 H 1.07994 * 119.99962 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99713 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99736 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00050 * 0.27216 * 7 5 4 10 10 H 1.48498 * 109.47491 * 269.72436 * 9 7 5 11 11 H 1.48496 * 109.47037 * 29.73009 * 9 7 5 12 12 H 1.48504 * 109.46843 * 149.72809 * 9 7 5 13 13 S 1.65600 * 120.00130 * 266.24996 * 3 2 1 14 14 O 1.42097 * 106.40228 * 27.41305 * 13 3 2 15 15 O 1.42098 * 106.40256 * 160.33868 * 13 3 2 16 16 N 1.65600 * 107.21315 * 273.87727 * 13 3 2 17 17 C 1.47153 * 120.98338 * 271.08323 * 16 13 3 18 18 C 1.53301 * 108.38549 * 230.51660 * 17 16 13 19 19 O 1.42954 * 109.22342 * 307.69585 * 18 17 16 20 20 C 1.42974 * 114.16599 * 62.58166 * 19 18 17 21 21 C 1.47149 * 120.98345 * 90.80813 * 16 13 3 22 22 C 1.53003 * 109.68286 * 249.20695 * 21 16 13 23 23 C 1.52998 * 109.68115 * 9.75698 * 21 16 13 24 24 C 1.53005 * 109.47551 * 182.45756 * 23 21 16 25 25 H 1.08999 * 109.46861 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46408 * 299.99671 * 1 2 3 27 27 H 1.08997 * 109.46885 * 59.99228 * 1 2 3 28 28 H 1.08992 * 109.46621 * 240.00229 * 2 1 3 29 29 H 1.09003 * 109.46813 * 120.00349 * 2 1 3 30 30 H 1.08999 * 109.47194 * 154.35368 * 4 3 2 31 31 H 1.08999 * 109.47380 * 34.34858 * 4 3 2 32 32 H 0.96997 * 119.99950 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.68352 * 350.23906 * 17 16 13 34 34 H 1.08993 * 109.68451 * 110.79383 * 17 16 13 35 35 H 1.09005 * 109.51366 * 67.62260 * 18 17 16 36 36 H 1.08995 * 109.51143 * 187.72300 * 18 17 16 37 37 H 1.08993 * 109.51039 * 57.34110 * 20 19 18 38 38 H 1.08995 * 109.50913 * 177.44439 * 20 19 18 39 39 H 1.09002 * 109.46567 * 59.99712 * 22 21 16 40 40 H 1.08994 * 109.47338 * 179.97438 * 22 21 16 41 41 H 1.08997 * 109.46658 * 300.00240 * 22 21 16 42 42 H 1.08994 * 109.47489 * 302.46023 * 23 21 16 43 43 H 1.09006 * 109.47023 * 62.46433 * 23 21 16 44 44 H 1.08997 * 109.46771 * 59.99579 * 24 23 21 45 45 H 1.08992 * 109.47550 * 180.02562 * 24 23 21 46 46 H 1.08994 * 109.46942 * 300.00602 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1844 2.0994 1.2661 5 6 0.8739 2.7301 1.6613 6 1 0.0044 2.6077 1.0326 7 6 0.7851 3.4632 2.8256 8 7 -0.3586 4.0132 3.1708 9 14 2.2910 3.6812 3.9092 10 1 2.3471 2.5818 4.9058 11 1 3.5146 3.6501 3.0683 12 1 2.2084 4.9853 4.6149 13 16 2.3828 2.1306 -1.4310 14 8 1.5687 1.5197 -2.4226 15 8 2.3706 3.5269 -1.1673 16 7 3.9479 1.7390 -1.8047 17 6 5.0700 2.5596 -1.3222 18 6 5.9716 2.8955 -2.5157 19 8 6.3161 1.6884 -3.1997 20 6 5.1987 0.9930 -3.7585 21 6 4.2579 0.5566 -2.6240 22 6 4.9435 -0.5037 -1.7599 23 6 2.9669 -0.0144 -3.2139 24 6 3.2873 -1.2785 -4.0143 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.9399 2.8760 1.1469 31 1 2.4999 1.4012 2.0413 32 1 -0.4210 4.5293 3.9897 33 1 4.6883 3.4799 -0.8801 34 1 5.6388 2.0026 -0.5778 35 1 5.4413 3.5613 -3.1966 36 1 6.8784 3.3850 -2.1605 37 1 4.6657 1.6519 -4.4439 38 1 5.5501 0.1136 -4.2981 39 1 4.2800 -0.7926 -0.9447 40 1 5.1712 -1.3779 -2.3698 41 1 5.8673 -0.0960 -1.3493 42 1 2.2765 -0.2605 -2.4072 43 1 2.5094 0.7253 -3.8709 44 1 3.7449 -2.0181 -3.3575 45 1 2.3676 -1.6850 -4.4350 46 1 3.9777 -1.0324 -4.8210 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336943383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:25 Heat of formation + Delta-G solvation = -119.731726 kcal Electronic energy + Delta-G solvation = -28570.797957 eV Core-core repulsion = 24815.559747 eV Total energy + Delta-G solvation = -3755.238210 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.92621 -38.74007 -37.81698 -37.01714 -36.66821 -34.70002 -34.62676 -31.77393 -30.86233 -29.19962 -29.05957 -27.18175 -25.66184 -24.33451 -23.49174 -22.89147 -21.53097 -19.56785 -19.10689 -18.71817 -17.95268 -17.71394 -17.02755 -16.64935 -16.41574 -16.18349 -15.92836 -15.41532 -15.28812 -14.99436 -14.66217 -14.57882 -14.44359 -14.12191 -13.89263 -13.83608 -13.61287 -13.22227 -13.11269 -13.07119 -12.90702 -12.83359 -12.71700 -12.57159 -12.30517 -12.27070 -12.13947 -11.97627 -11.94952 -11.78979 -11.59014 -11.31019 -11.15286 -10.77362 -10.74961 -9.90525 -9.72037 -8.27617 -6.32265 -0.42889 1.34627 1.39070 1.48001 1.93359 2.35169 2.51056 2.86265 3.05492 3.29226 3.50236 3.67734 3.87495 3.93593 4.04880 4.14189 4.24832 4.29241 4.41564 4.49180 4.50434 4.58633 4.63043 4.63908 4.68516 4.81449 4.83206 4.87087 4.90604 4.92468 4.95974 5.03556 5.16765 5.25952 5.32841 5.36048 5.43609 5.49667 5.52884 5.54485 5.69518 5.88261 6.12823 6.32603 6.70996 7.30021 8.89570 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.005668 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.774253 B = 4939.030182 C = 5714.964850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.124 3.876 3 N -0.992 5.992 4 C 0.236 3.764 5 C -0.535 4.535 6 H 0.033 0.967 7 C 0.006 3.994 8 N -0.949 5.949 9 Si 0.941 3.059 10 H -0.255 1.255 11 H -0.241 1.241 12 H -0.286 1.286 13 S 2.779 3.221 14 O -0.990 6.990 15 O -1.015 7.015 16 N -0.999 5.999 17 C 0.076 3.924 18 C 0.054 3.946 19 O -0.380 6.380 20 C 0.061 3.939 21 C 0.140 3.860 22 C -0.151 4.151 23 C -0.146 4.146 24 C -0.149 4.149 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.035 0.965 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.031 0.969 31 H 0.052 0.948 32 H 0.266 0.734 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.132 0.868 37 H 0.049 0.951 38 H 0.132 0.868 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.289 -12.397 -12.129 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.832 5.832 4 C 0.111 3.889 5 C -0.574 4.574 6 H 0.051 0.949 7 C -0.191 4.191 8 N -0.590 5.590 9 Si 0.763 3.237 10 H -0.179 1.179 11 H -0.164 1.164 12 H -0.212 1.212 13 S 2.792 3.208 14 O -0.974 6.974 15 O -0.999 6.999 16 N -0.840 5.840 17 C -0.049 4.049 18 C -0.024 4.024 19 O -0.298 6.298 20 C -0.017 4.017 21 C 0.053 3.947 22 C -0.210 4.210 23 C -0.185 4.185 24 C -0.207 4.207 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.150 0.850 37 H 0.067 0.933 38 H 0.150 0.850 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.796 -11.782 -12.506 23.339 hybrid contribution -0.626 0.843 1.105 1.524 sum 15.170 -10.938 -11.401 21.904 Atomic orbital electron populations 1.22222 0.97256 1.02315 1.01180 1.21422 0.94110 0.80869 1.03629 1.57561 1.79408 1.24128 1.22122 1.19192 0.95225 0.91782 0.82709 1.21716 0.96674 1.31981 1.07036 0.94857 1.25906 0.99355 0.94524 0.99328 1.70072 1.27571 1.35897 1.25423 0.85817 0.80199 0.78361 0.79303 1.17925 1.16408 1.21156 1.01960 0.73793 0.72250 0.72812 1.93681 1.68940 1.76937 1.57801 1.93525 1.86925 1.33523 1.85883 1.58384 1.22871 1.37821 1.64965 1.22298 0.88430 0.95592 0.98586 1.22993 1.00260 0.86701 0.92473 1.87913 1.31840 1.37517 1.72510 1.23207 0.87411 0.97870 0.93211 1.21504 0.96929 0.84640 0.91604 1.22147 1.00827 0.98059 0.99931 1.22553 0.94025 0.99762 1.02127 1.21928 1.02361 0.96131 1.00281 0.89450 0.93867 0.94602 0.88800 0.88951 0.95135 0.93029 0.92499 0.89686 0.88928 0.93210 0.85006 0.93284 0.85028 0.92378 0.88707 0.91691 0.90765 0.90735 0.90604 0.92187 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.14 9.90 71.99 0.71 -5.43 16 2 C 0.12 3.99 6.07 86.38 0.52 4.51 16 3 N -0.99 -39.12 2.84 -519.82 -1.48 -40.60 16 4 C 0.24 10.80 4.20 85.63 0.36 11.16 16 5 C -0.53 -30.91 9.05 25.60 0.23 -30.67 16 6 H 0.03 2.17 7.20 -2.91 -0.02 2.15 16 7 C 0.01 0.37 5.47 84.65 0.46 0.83 16 8 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 9 Si 0.94 42.85 27.47 68.60 1.88 44.73 16 10 H -0.25 -10.72 7.11 99.48 0.71 -10.02 16 11 H -0.24 -9.93 6.53 99.48 0.65 -9.28 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 13 S 2.78 108.55 5.82 -56.49 -0.33 108.22 16 14 O -0.99 -38.97 11.69 -128.00 -1.50 -40.47 16 15 O -1.01 -49.30 15.64 -128.00 -2.00 -51.31 16 16 N -1.00 -28.41 3.09 -467.36 -1.44 -29.85 16 17 C 0.08 1.91 6.31 86.36 0.54 2.45 16 18 C 0.05 1.10 6.98 72.08 0.50 1.60 16 19 O -0.38 -7.86 10.37 -148.98 -1.54 -9.41 16 20 C 0.06 1.17 5.20 72.22 0.38 1.54 16 21 C 0.14 3.08 0.82 3.72 0.00 3.08 16 22 C -0.15 -2.63 8.13 71.98 0.59 -2.05 16 23 C -0.15 -3.42 3.29 30.60 0.10 -3.32 16 24 C -0.15 -2.29 9.23 71.98 0.66 -1.63 16 25 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.04 1.87 6.67 -2.39 -0.02 1.85 16 27 H 0.03 1.40 7.90 -2.39 -0.02 1.38 16 28 H 0.09 2.46 5.06 -2.39 -0.01 2.45 16 29 H 0.09 2.57 7.98 -2.39 -0.02 2.55 16 30 H 0.03 1.41 6.57 -2.39 -0.02 1.40 16 31 H 0.05 2.13 7.42 -2.39 -0.02 2.11 16 32 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.08 2.45 6.97 -2.39 -0.02 2.43 16 34 H 0.09 1.97 7.65 -2.39 -0.02 1.96 16 35 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.13 1.73 6.98 -2.39 -0.02 1.72 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 1.17 6.37 -2.39 -0.02 1.15 16 41 H 0.06 1.16 7.21 -2.39 -0.02 1.14 16 42 H 0.07 1.97 3.47 -2.39 -0.01 1.96 16 43 H 0.07 2.11 6.53 -2.38 -0.02 2.10 16 44 H 0.08 0.90 6.38 -2.39 -0.02 0.89 16 45 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.07 0.84 6.74 -2.39 -0.02 0.82 16 Total: -1.00 -76.73 350.53 -0.12 -76.85 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.92 Total: 19.68 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 5.07 Total: -17.91 kcal Atomic # 7 Polarization: -127.77 SS G_CDS: -2.62 Total: -130.39 kcal Atomic # 8 Polarization: -96.14 SS G_CDS: -5.04 Total: -101.18 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.73 kcal Atomic # 16 Polarization: 108.55 SS G_CDS: -0.33 Total: 108.22 kcal Total: -76.73 -0.12 -76.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336943383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.877 kcal (2) G-P(sol) polarization free energy of solvation -76.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds