Wall clock time and date at job start Fri Apr 10 2020 18:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46880 * 2 1 4 4 C 1.52994 * 109.47408 * 240.00101 * 2 1 3 5 5 O 1.42907 * 109.46962 * 304.99856 * 4 2 1 6 6 C 1.42901 * 114.00000 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46927 * 179.97438 * 6 5 4 8 8 C 1.53003 * 117.50224 * 243.74668 * 7 6 5 9 9 C 1.53000 * 117.49633 * 175.09074 * 7 6 5 10 10 N 1.46497 * 109.46954 * 119.99778 * 2 1 3 11 11 S 1.65606 * 120.00087 * 265.00003 * 10 2 1 12 12 O 1.42098 * 106.40197 * 178.54417 * 11 10 2 13 13 O 1.42103 * 106.40012 * 311.46174 * 11 10 2 14 14 N 1.65599 * 107.21698 * 65.00293 * 11 10 2 15 15 C 1.46504 * 119.99779 * 270.00074 * 14 11 10 16 16 C 1.46504 * 119.99952 * 90.00004 * 14 11 10 17 17 H 1.08996 * 109.46756 * 359.97438 * 16 14 11 18 18 C 1.53008 * 109.46701 * 240.00077 * 16 14 11 19 19 C 1.50697 * 109.46700 * 120.00078 * 16 14 11 20 20 H 1.08001 * 120.00219 * 35.00311 * 19 16 14 21 21 C 1.37877 * 119.99458 * 214.99768 * 19 16 14 22 22 N 1.31513 * 119.99624 * 184.90984 * 21 19 16 23 23 Si 1.86796 * 120.00322 * 4.91135 * 21 19 16 24 24 H 1.48497 * 109.47360 * 84.81563 * 23 21 19 25 25 H 1.48499 * 109.47502 * 204.81935 * 23 21 19 26 26 H 1.48502 * 109.46958 * 324.82014 * 23 21 19 27 27 H 1.08997 * 109.47307 * 300.00256 * 1 2 3 28 28 H 1.08996 * 109.46880 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46932 * 60.00592 * 1 2 3 30 30 H 1.08997 * 109.47590 * 64.99520 * 4 2 1 31 31 H 1.08990 * 109.47370 * 185.00177 * 4 2 1 32 32 H 1.08997 * 109.47385 * 300.00383 * 6 5 4 33 33 H 1.09007 * 109.46979 * 60.00283 * 6 5 4 34 34 H 1.09000 * 115.55364 * 29.41848 * 7 6 5 35 35 H 1.09004 * 117.49749 * 0.02562 * 8 7 6 36 36 H 1.08998 * 117.49943 * 145.01820 * 8 7 6 37 37 H 1.09009 * 117.49739 * 214.98230 * 9 7 6 38 38 H 1.08999 * 117.50383 * 0.02562 * 9 7 6 39 39 H 0.96993 * 120.00042 * 85.00327 * 10 2 1 40 40 H 1.09006 * 109.46863 * 90.00165 * 15 14 11 41 41 H 1.08996 * 109.46589 * 209.99655 * 15 14 11 42 42 H 1.09000 * 109.47215 * 329.99679 * 15 14 11 43 43 H 1.09000 * 109.46482 * 175.09230 * 18 16 14 44 44 H 1.08999 * 109.47227 * 295.09058 * 18 16 14 45 45 H 1.08995 * 109.47227 * 55.09351 * 18 16 14 46 46 H 0.97008 * 119.99984 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.4703 -2.0304 -1.3094 6 6 1.8837 -2.7925 -2.4453 7 6 1.2164 -4.1687 -2.4063 8 6 2.1256 -5.3910 -2.2635 9 6 1.4420 -5.0973 -3.6012 10 7 2.0183 -0.6906 1.1962 11 16 2.4122 0.1773 2.5505 12 8 2.8124 -0.7696 3.5315 13 8 3.2436 1.2444 2.1156 14 7 1.0168 0.8704 3.1115 15 6 0.6184 2.1994 2.6409 16 6 0.1806 0.1547 4.0784 17 1 0.6344 -0.8095 4.3074 18 6 -1.2118 -0.0658 3.4838 19 6 0.0645 0.9685 5.3414 20 1 0.0299 2.0466 5.2879 21 6 0.0022 0.3366 6.5653 22 7 -0.1960 1.0397 7.6589 23 14 0.1996 -1.5179 6.6701 24 1 1.6437 -1.8599 6.7224 25 1 -0.4725 -2.0188 7.8960 26 1 -0.4156 -2.1495 5.4752 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 -0.8900 30 1 1.7517 -0.1584 -2.1369 31 1 3.1263 -0.7994 -1.2055 32 1 1.5919 -2.2725 -3.3576 33 1 2.9669 -2.9137 -2.4268 34 1 0.2431 -4.2056 -1.9169 35 1 3.1992 -5.2147 -2.1970 36 1 1.7503 -6.2321 -1.6805 37 1 0.6171 -5.7453 -3.8978 38 1 2.0661 -4.7280 -4.4149 39 1 2.1110 -1.6560 1.1949 40 1 -0.0046 2.0984 1.7521 41 1 0.0555 2.7082 3.4233 42 1 1.5080 2.7802 2.3970 43 1 -1.8062 -0.6732 4.1662 44 1 -1.7002 0.8973 3.3353 45 1 -1.1210 -0.5785 2.5262 46 1 -0.2395 0.5952 8.5201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593654864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:37 Heat of formation + Delta-G solvation = -124.173095 kcal Electronic energy + Delta-G solvation = -26687.301856 eV Core-core repulsion = 22931.871054 eV Total energy + Delta-G solvation = -3755.430802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.65423 -38.40897 -38.14139 -37.83177 -36.90705 -36.23513 -34.48636 -31.64570 -31.12943 -28.48134 -27.30765 -26.96869 -26.65658 -23.25350 -22.45563 -22.30655 -21.54013 -20.34820 -19.28559 -18.92656 -18.17123 -17.77390 -17.30408 -16.94750 -16.77468 -16.14766 -15.68026 -15.42741 -15.24144 -14.89012 -14.55036 -14.49687 -14.42659 -14.27138 -13.69948 -13.54070 -13.44241 -13.29633 -13.19983 -13.06787 -12.87488 -12.86289 -12.55690 -12.48030 -12.40149 -12.32923 -12.04928 -11.94188 -11.79327 -11.74226 -11.30476 -11.24047 -11.14392 -10.74354 -10.48171 -10.38726 -9.65929 -8.32386 -6.34712 -0.34734 1.29398 1.39014 1.43129 2.01320 2.31865 2.52962 2.63925 2.97951 3.07984 3.41352 3.76460 3.92580 3.98190 4.06894 4.10408 4.15882 4.36956 4.40429 4.41733 4.50218 4.53045 4.65960 4.68968 4.72557 4.77873 4.79483 4.83727 4.86543 4.99756 5.02151 5.09091 5.18529 5.23129 5.25302 5.29481 5.40761 5.51643 5.56057 5.62875 5.93597 6.17182 6.30638 6.35180 6.72042 7.30752 8.83366 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.003839 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.903007 B = 7291.836099 C = 7940.125178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.145 3.855 3 H 0.106 0.894 4 C 0.061 3.939 5 O -0.396 6.396 6 C 0.091 3.909 7 C -0.167 4.167 8 C -0.187 4.187 9 C -0.161 4.161 10 N -1.111 6.111 11 S 2.788 3.212 12 O -1.022 7.022 13 O -1.009 7.009 14 N -0.990 5.990 15 C 0.087 3.913 16 C 0.239 3.761 17 H 0.042 0.958 18 C -0.140 4.140 19 C -0.515 4.515 20 H 0.054 0.946 21 C 0.024 3.976 22 N -0.938 5.938 23 Si 0.911 3.089 24 H -0.282 1.282 25 H -0.278 1.278 26 H -0.236 1.236 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.421 0.579 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.967 -7.899 -26.285 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.038 3.962 3 H 0.124 0.876 4 C -0.017 4.017 5 O -0.315 6.315 6 C 0.015 3.985 7 C -0.185 4.185 8 C -0.224 4.224 9 C -0.198 4.198 10 N -0.873 5.873 11 S 2.797 3.203 12 O -1.006 7.006 13 O -0.992 6.992 14 N -0.832 5.832 15 C -0.058 4.058 16 C 0.134 3.866 17 H 0.059 0.941 18 C -0.200 4.200 19 C -0.555 4.555 20 H 0.073 0.927 21 C -0.175 4.175 22 N -0.578 5.578 23 Si 0.735 3.265 24 H -0.208 1.208 25 H -0.204 1.204 26 H -0.159 1.159 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.257 0.743 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.688 -7.675 -25.602 26.781 hybrid contribution 0.103 -0.970 0.738 1.223 sum 1.791 -8.645 -24.863 26.384 Atomic orbital electron populations 1.22363 0.93826 1.03446 1.03396 1.21116 0.95799 0.96044 0.83204 0.87618 1.22790 0.97528 0.84002 0.97416 1.87866 1.70509 1.26815 1.46352 1.22094 0.97595 0.90241 0.88590 1.22154 1.01107 0.90585 1.04644 1.23149 0.98878 0.99365 1.00960 1.23060 1.03505 1.01715 0.91507 1.55828 1.83512 1.20216 1.27770 1.01460 0.73550 0.72640 0.72640 1.93541 1.82459 1.64361 1.60210 1.93503 1.66019 1.56617 1.83027 1.57600 1.42741 1.27310 1.55550 1.21590 1.01256 0.82713 1.00225 1.18902 0.89496 0.91488 0.86707 0.94064 1.22138 0.96669 1.01535 0.99609 1.21479 1.48979 0.94700 0.90383 0.92740 1.25684 0.94334 1.01951 0.95560 1.70004 1.51024 1.37720 0.99009 0.86290 0.78898 0.82181 0.79103 1.20800 1.20352 1.15879 0.91869 0.91795 0.89478 0.89336 0.92409 0.91501 0.92891 0.87952 0.88497 0.88705 0.87685 0.87559 0.74334 0.90148 0.91510 0.91144 0.93560 0.92096 0.91865 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 9.23 71.98 0.66 -2.61 16 2 C 0.14 3.00 3.34 44.99 0.15 3.15 16 3 H 0.11 2.08 7.50 -2.39 -0.02 2.06 16 4 C 0.06 0.99 5.73 71.98 0.41 1.41 16 5 O -0.40 -7.42 9.17 -148.98 -1.37 -8.78 16 6 C 0.09 1.32 6.22 71.98 0.45 1.77 16 7 C -0.17 -2.47 6.05 -10.79 -0.07 -2.54 16 8 C -0.19 -2.54 10.18 30.62 0.31 -2.23 16 9 C -0.16 -1.76 10.25 30.62 0.31 -1.44 16 10 N -1.11 -30.23 5.52 -169.40 -0.94 -31.16 16 11 S 2.79 105.59 6.12 -56.49 -0.35 105.24 16 12 O -1.02 -47.84 16.70 -128.00 -2.14 -49.98 16 13 O -1.01 -40.21 16.08 -128.00 -2.06 -42.27 16 14 N -0.99 -38.39 2.79 -520.42 -1.45 -39.84 16 15 C 0.09 2.82 9.57 127.77 1.22 4.04 16 16 C 0.24 10.76 2.28 44.25 0.10 10.86 16 17 H 0.04 2.00 4.06 -2.39 -0.01 1.99 16 18 C -0.14 -5.19 8.91 71.98 0.64 -4.55 16 19 C -0.52 -28.50 8.72 25.60 0.22 -28.27 16 20 H 0.05 3.24 6.82 -2.91 -0.02 3.22 16 21 C 0.02 1.39 5.47 84.65 0.46 1.86 16 22 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 23 Si 0.91 45.44 26.99 68.60 1.85 47.29 16 24 H -0.28 -14.76 7.11 99.48 0.71 -14.05 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 26 H -0.24 -10.57 6.82 99.48 0.68 -9.89 16 27 H 0.06 1.35 4.32 -2.39 -0.01 1.34 16 28 H 0.06 1.33 7.56 -2.39 -0.02 1.32 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.72 7.87 -2.38 -0.02 0.70 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.10 1.26 8.03 -2.39 -0.02 1.24 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.42 10.84 8.58 -96.75 -0.83 10.01 16 40 H 0.08 1.94 6.22 -2.38 -0.01 1.92 16 41 H 0.07 2.41 6.56 -2.39 -0.02 2.39 16 42 H 0.07 2.19 7.02 -2.39 -0.02 2.17 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.06 2.14 7.83 -2.39 -0.02 2.12 16 45 H 0.06 1.92 7.05 -2.39 -0.02 1.91 16 46 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -73.72 375.35 -1.14 -74.86 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.12 Total: 21.09 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 4.89 Total: -18.56 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -2.09 Total: -128.89 kcal Atomic # 8 Polarization: -95.47 SS G_CDS: -5.56 Total: -101.03 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.85 Total: 47.29 kcal Atomic # 16 Polarization: 105.59 SS G_CDS: -0.35 Total: 105.24 kcal Total: -73.72 -1.14 -74.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593654864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.314 kcal (2) G-P(sol) polarization free energy of solvation -73.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds