Wall clock time and date at job start Fri Apr 10 2020 18:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47203 * 2 1 4 4 C 1.52997 * 109.47330 * 239.99911 * 2 1 3 5 5 O 1.42907 * 109.47052 * 305.00099 * 4 2 1 6 6 C 1.42897 * 113.99800 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47118 * 179.97438 * 6 5 4 8 8 C 1.52998 * 117.50376 * 243.74780 * 7 6 5 9 9 C 1.52999 * 117.49995 * 175.08079 * 7 6 5 10 10 N 1.46506 * 109.47119 * 119.99921 * 2 1 3 11 11 S 1.65606 * 119.99839 * 244.81421 * 10 2 1 12 12 O 1.42098 * 106.40125 * 48.19452 * 11 10 2 13 13 O 1.42097 * 106.39962 * 181.11816 * 11 10 2 14 14 N 1.65602 * 107.21552 * 294.65820 * 11 10 2 15 15 C 1.46492 * 120.00287 * 93.90901 * 14 11 10 16 16 C 1.46499 * 119.99767 * 273.90061 * 14 11 10 17 17 H 1.09002 * 109.47374 * 1.82719 * 16 14 11 18 18 C 1.53003 * 109.46709 * 121.82426 * 16 14 11 19 19 C 1.50700 * 109.47517 * 241.82159 * 16 14 11 20 20 H 1.08002 * 119.99766 * 0.02562 * 19 16 14 21 21 C 1.37876 * 120.00107 * 180.02562 * 19 16 14 22 22 N 1.31514 * 119.99974 * 0.02562 * 21 19 16 23 23 Si 1.86795 * 119.99922 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47426 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47098 * 120.00095 * 23 21 19 26 26 H 1.48497 * 109.47293 * 239.99874 * 23 21 19 27 27 H 1.09000 * 109.46562 * 176.37604 * 1 2 3 28 28 H 1.08993 * 109.47035 * 296.37296 * 1 2 3 29 29 H 1.08996 * 109.47025 * 56.37890 * 1 2 3 30 30 H 1.09002 * 109.47058 * 64.99556 * 4 2 1 31 31 H 1.08998 * 109.47395 * 184.99759 * 4 2 1 32 32 H 1.09000 * 109.47327 * 299.99850 * 6 5 4 33 33 H 1.08999 * 109.47609 * 60.00109 * 6 5 4 34 34 H 1.09010 * 115.54529 * 29.41848 * 7 6 5 35 35 H 1.09003 * 117.49457 * 359.97438 * 8 7 6 36 36 H 1.08994 * 117.50173 * 145.01769 * 8 7 6 37 37 H 1.09000 * 117.49774 * 214.97758 * 9 7 6 38 38 H 1.08997 * 117.50170 * 0.02562 * 9 7 6 39 39 H 0.96996 * 119.99600 * 64.81697 * 10 2 1 40 40 H 1.09006 * 109.47356 * 89.99671 * 15 14 11 41 41 H 1.08995 * 109.47548 * 209.99767 * 15 14 11 42 42 H 1.09006 * 109.47180 * 329.99982 * 15 14 11 43 43 H 1.08998 * 109.47389 * 305.72608 * 18 16 14 44 44 H 1.08993 * 109.47363 * 65.73176 * 18 16 14 45 45 H 1.09002 * 109.47073 * 185.72977 * 18 16 14 46 46 H 0.97005 * 119.99777 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.4702 -2.0304 -1.3094 6 6 1.8846 -2.7930 -2.4446 7 6 1.2171 -4.1692 -2.4058 8 6 2.1261 -5.3915 -2.2619 9 6 1.4434 -5.0981 -3.6003 10 7 2.0184 -0.6906 1.1962 11 16 2.8698 0.1448 2.3450 12 8 2.1291 1.3277 2.6122 13 8 3.2188 -0.7974 3.3498 14 7 4.2902 0.6304 1.6457 15 6 4.3902 1.9591 1.0369 16 6 5.4468 -0.2687 1.6360 17 1 5.1747 -1.2158 2.1018 18 6 5.8864 -0.5183 0.1919 19 6 6.5797 0.3618 2.4041 20 1 6.4509 1.3348 2.8548 21 6 7.7806 -0.3035 2.5314 22 7 7.9376 -1.4881 1.9821 23 14 9.1846 0.4777 3.4841 24 1 8.7560 1.8025 4.0001 25 1 9.5584 -0.3992 4.6229 26 1 10.3556 0.6504 2.5874 27 1 -0.3632 -1.0256 -0.0650 28 1 -0.3633 0.4565 0.9206 29 1 -0.3633 0.5690 -0.8557 30 1 1.7516 -0.1584 -2.1369 31 1 3.1263 -0.7994 -1.2056 32 1 1.5934 -2.2732 -3.3574 33 1 2.9676 -2.9142 -2.4253 34 1 0.2434 -4.2057 -1.9172 35 1 3.1997 -5.2151 -2.1953 36 1 1.7503 -6.2323 -1.6789 37 1 0.6188 -5.7461 -3.8972 38 1 2.0681 -4.7290 -4.4136 39 1 1.8430 -1.6371 1.3153 40 1 4.7249 2.6775 1.7854 41 1 5.1064 1.9297 0.2159 42 1 3.4136 2.2590 0.6567 43 1 5.0378 -0.8792 -0.3891 44 1 6.2545 0.4114 -0.2418 45 1 6.6803 -1.2651 0.1777 46 1 8.7824 -1.9563 2.0720 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593654865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:40 Heat of formation + Delta-G solvation = -101.946145 kcal Electronic energy + Delta-G solvation = -26793.206318 eV Core-core repulsion = 23038.739349 eV Total energy + Delta-G solvation = -3754.466969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.75255 -37.22544 -36.59041 -36.15997 -35.21385 -35.16188 -32.56984 -30.03932 -29.11328 -27.61308 -25.86813 -25.59622 -25.10544 -22.56739 -21.33388 -20.83220 -20.71048 -18.92273 -17.42926 -16.82827 -16.75841 -16.45047 -16.01562 -15.94836 -15.17694 -14.79731 -14.69627 -14.28663 -13.73774 -13.46390 -13.32602 -13.25622 -12.90420 -12.58099 -12.53156 -11.99700 -11.80165 -11.73896 -11.60736 -11.52289 -11.45331 -11.32272 -11.22745 -11.08913 -11.00192 -10.93611 -10.79213 -10.60251 -10.46462 -10.34027 -10.26006 -10.01180 -9.54198 -9.32314 -9.20568 -8.46181 -7.96940 -6.07193 -4.12806 1.25897 3.28059 3.34452 3.36417 3.40611 3.53538 3.73794 4.18278 4.41211 4.61910 4.70396 4.79371 4.83341 4.99765 5.06313 5.15883 5.21281 5.25299 5.30599 5.38363 5.43377 5.48625 5.53067 5.67001 5.67742 5.72453 5.91544 5.93998 6.01837 6.10356 6.17920 6.32280 6.41298 6.61210 6.74470 6.79504 6.99826 7.15272 7.27060 7.50656 7.63805 7.79135 8.02909 8.27510 8.89607 9.53018 10.98952 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012412 B = 0.004377 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.355729 B = 6395.342319 C = 7878.992953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.161 3.839 3 H 0.096 0.904 4 C 0.049 3.951 5 O -0.378 6.378 6 C 0.093 3.907 7 C -0.151 4.151 8 C -0.176 4.176 9 C -0.177 4.177 10 N -1.123 6.123 11 S 2.778 3.222 12 O -0.998 6.998 13 O -0.974 6.974 14 N -0.992 5.992 15 C 0.108 3.892 16 C 0.271 3.729 17 H 0.056 0.944 18 C -0.144 4.144 19 C -0.519 4.519 20 H 0.063 0.937 21 C 0.063 3.937 22 N -0.891 5.891 23 Si 0.897 3.103 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.284 1.284 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.417 0.583 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.010 0.990 44 H 0.034 0.966 45 H 0.089 0.911 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.882 -1.754 -12.390 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 H 0.114 0.886 4 C -0.029 4.029 5 O -0.297 6.297 6 C 0.016 3.984 7 C -0.169 4.169 8 C -0.213 4.213 9 C -0.214 4.214 10 N -0.881 5.881 11 S 2.786 3.214 12 O -0.981 6.981 13 O -0.958 6.958 14 N -0.835 5.835 15 C -0.039 4.039 16 C 0.168 3.832 17 H 0.074 0.926 18 C -0.203 4.203 19 C -0.558 4.558 20 H 0.081 0.919 21 C -0.139 4.139 22 N -0.530 5.530 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.210 1.210 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.250 0.750 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.029 0.971 44 H 0.054 0.946 45 H 0.107 0.893 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.125 -1.587 -11.384 17.447 hybrid contribution 1.165 -0.043 -0.125 1.173 sum -11.960 -1.630 -11.509 16.678 Atomic orbital electron populations 1.22092 0.94523 1.03075 1.02090 1.20678 0.95381 0.94989 0.83673 0.88638 1.23000 0.98424 0.83926 0.97551 1.87827 1.70049 1.26414 1.45426 1.21979 0.97743 0.90155 0.88494 1.22118 1.01289 0.90389 1.03142 1.23101 0.99131 0.99435 0.99639 1.22973 1.03566 1.02853 0.91984 1.56223 1.72120 1.23182 1.36613 1.02008 0.72724 0.73145 0.73509 1.93538 1.71879 1.48713 1.83964 1.93615 1.83363 1.63539 1.55270 1.57732 1.27545 1.23435 1.74771 1.21181 1.00297 0.83864 0.98527 1.18681 0.82116 0.88541 0.93893 0.92618 1.22107 0.99931 1.01418 0.96856 1.21382 0.96720 1.04528 1.33199 0.91926 1.24902 0.98557 0.94859 0.95562 1.69880 1.25501 1.13139 1.44466 0.86452 0.81812 0.79476 0.79728 1.19735 1.20905 1.21044 0.91214 0.91922 0.92043 0.92646 0.91750 0.93212 0.92936 0.86998 0.88386 0.88629 0.88600 0.88761 0.74996 0.93232 0.91013 0.93370 0.97122 0.94646 0.89265 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.38 37.16 0.35 -1.43 16 2 C 0.16 2.04 3.30 -67.93 -0.22 1.82 16 3 H 0.10 1.16 6.47 -51.93 -0.34 0.82 16 4 C 0.05 0.57 5.77 37.16 0.21 0.79 16 5 O -0.38 -4.62 9.25 -35.23 -0.33 -4.95 16 6 C 0.09 0.98 6.22 37.16 0.23 1.21 16 7 C -0.15 -1.47 6.05 -90.62 -0.55 -2.02 16 8 C -0.18 -1.65 10.18 -26.69 -0.27 -1.93 16 9 C -0.18 -1.42 10.26 -26.69 -0.27 -1.69 16 10 N -1.12 -17.21 5.41 -4.89 -0.03 -17.24 16 11 S 2.78 54.67 5.94 -107.50 -0.64 54.03 16 12 O -1.00 -20.56 16.71 -57.17 -0.96 -21.52 16 13 O -0.97 -23.14 16.85 -57.17 -0.96 -24.10 16 14 N -0.99 -20.20 3.12 -115.85 -0.36 -20.56 16 15 C 0.11 1.86 9.63 59.84 0.58 2.43 16 16 C 0.27 6.52 2.59 -69.08 -0.18 6.34 16 17 H 0.06 1.50 7.05 -51.93 -0.37 1.13 16 18 C -0.14 -3.14 8.69 37.16 0.32 -2.82 16 19 C -0.52 -13.94 8.39 -34.44 -0.29 -14.23 16 20 H 0.06 1.69 7.71 -52.49 -0.40 1.28 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 22 N -0.89 -24.69 11.38 55.43 0.63 -24.06 16 23 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.07 0.79 7.44 -51.93 -0.39 0.40 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.83 6.94 -51.93 -0.36 0.47 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.58 7.87 -51.93 -0.41 0.17 16 34 H 0.11 1.10 8.14 -51.92 -0.42 0.68 16 35 H 0.10 0.97 8.03 -51.93 -0.42 0.55 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.42 6.08 8.86 -34.48 -0.31 5.78 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.17 6.46 -51.93 -0.34 0.84 16 42 H 0.05 0.68 6.42 -51.93 -0.33 0.35 16 43 H 0.01 0.19 6.94 -51.93 -0.36 -0.17 16 44 H 0.03 0.74 6.86 -51.93 -0.36 0.38 16 45 H 0.09 2.18 6.24 -51.93 -0.32 1.86 16 46 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -32.05 380.17 -9.75 -41.80 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.63 Total: 4.61 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -0.19 Total: -9.91 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.24 Total: -61.85 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -2.24 Total: -50.56 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 54.67 SS G_CDS: -0.64 Total: 54.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.05 -9.75 -41.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593654865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.144 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds