Wall clock time and date at job start Fri Apr 10 2020 18:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.53750 * 2 1 4 4 C 1.53096 * 109.50578 * 239.88765 * 2 1 3 5 5 N 1.47015 * 109.29000 * 183.23719 * 4 2 1 6 6 C 1.46899 * 111.00014 * 182.37313 * 5 4 2 7 7 C 1.53007 * 109.47417 * 183.86766 * 6 5 4 8 8 N 1.46498 * 109.47111 * 185.19496 * 7 6 5 9 9 S 1.65604 * 119.99860 * 165.00121 * 8 7 6 10 10 O 1.42098 * 104.27863 * 181.07124 * 9 8 7 11 11 O 1.42105 * 104.27487 * 308.92962 * 9 8 7 12 12 C 1.81396 * 104.44957 * 64.99797 * 9 8 7 13 13 C 1.52999 * 109.47011 * 180.02562 * 12 9 8 14 14 C 1.50701 * 109.47346 * 180.02562 * 13 12 9 15 15 H 1.08008 * 119.99557 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00448 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99754 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00526 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46965 * 89.99664 * 18 16 14 20 20 H 1.48489 * 109.47379 * 210.00071 * 18 16 14 21 21 H 1.48504 * 109.46701 * 330.00036 * 18 16 14 22 22 C 1.47018 * 110.75341 * 58.59595 * 5 4 2 23 23 H 1.09001 * 109.50552 * 181.44378 * 22 5 4 24 24 C 1.53000 * 109.50687 * 61.31628 * 22 5 4 25 25 C 1.53103 * 109.25614 * 301.38222 * 22 5 4 26 26 O 1.43011 * 109.25639 * 56.84695 * 25 22 5 27 27 H 1.09003 * 109.47285 * 180.10909 * 1 2 3 28 28 H 1.08998 * 109.47756 * 300.11402 * 1 2 3 29 29 H 1.09000 * 109.47350 * 60.11537 * 1 2 3 30 30 H 1.09002 * 109.50752 * 63.28841 * 4 2 1 31 31 H 1.09000 * 109.50685 * 303.19338 * 4 2 1 32 32 H 1.09000 * 109.46930 * 303.86505 * 6 5 4 33 33 H 1.08994 * 109.47306 * 63.86435 * 6 5 4 34 34 H 1.08997 * 109.46722 * 305.19410 * 7 6 5 35 35 H 1.09004 * 109.47072 * 65.19237 * 7 6 5 36 36 H 0.97001 * 120.00246 * 344.99751 * 8 7 6 37 37 H 1.09003 * 109.47060 * 300.00099 * 12 9 8 38 38 H 1.08999 * 109.47443 * 60.00220 * 12 9 8 39 39 H 1.09003 * 109.46983 * 299.99771 * 13 12 9 40 40 H 1.08997 * 109.47643 * 59.99812 * 13 12 9 41 41 H 0.96998 * 119.99863 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.46819 * 64.19790 * 24 22 5 43 43 H 1.08995 * 109.47141 * 184.19266 * 24 22 5 44 44 H 1.09000 * 109.46974 * 304.20193 * 24 22 5 45 45 H 1.08999 * 109.50360 * 176.78218 * 25 22 5 46 46 H 1.09000 * 109.50622 * 296.86959 * 25 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7240 -1.2483 5 7 3.5092 -0.7894 -1.2049 6 6 4.0438 -1.4284 -2.4148 7 6 5.5626 -1.5654 -2.2907 8 7 6.1099 -2.0879 -3.5451 9 16 7.7364 -1.9934 -3.8418 10 8 7.8905 -2.5628 -5.1346 11 8 8.0586 -0.6310 -3.5981 12 6 8.4889 -3.0604 -2.5825 13 6 10.0094 -3.0563 -2.7530 14 6 10.6346 -3.9432 -1.7072 15 1 10.0098 -4.4580 -0.9922 16 6 12.0039 -4.0975 -1.6632 17 7 12.7645 -3.4711 -2.5342 18 14 12.7789 -5.1963 -0.3665 19 1 12.8889 -6.5808 -0.8923 20 1 14.1319 -4.6858 -0.0294 21 1 11.9317 -5.1960 0.8532 22 6 3.9639 -1.4893 0.0054 23 1 5.0536 -1.5036 0.0299 24 6 3.4334 -2.9243 -0.0046 25 6 3.4343 -0.7570 1.2412 26 8 2.0085 -0.6756 1.1662 27 1 -0.3634 -1.0277 0.0020 28 1 -0.3634 0.5156 0.8889 29 1 -0.3634 0.5120 -0.8910 30 1 1.7274 -0.1796 -2.1390 31 1 1.6325 -1.7341 -1.2762 32 1 3.5982 -2.4164 -2.5309 33 1 3.8040 -0.8172 -3.2847 34 1 5.9996 -0.5888 -2.0825 35 1 5.8004 -2.2508 -1.4771 36 1 5.5196 -2.4892 -4.2020 37 1 8.2338 -2.6873 -1.5906 38 1 8.1130 -4.0772 -2.6960 39 1 10.2648 -3.4292 -3.7449 40 1 10.3851 -2.0395 -2.6393 41 1 13.7279 -3.5799 -2.5035 42 1 3.8666 -3.4660 -0.8454 43 1 3.7078 -3.4196 0.9268 44 1 2.3479 -2.9097 -0.1023 45 1 3.7209 -1.3043 2.1392 46 1 3.8555 0.2477 1.2773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594816956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:56 Heat of formation + Delta-G solvation = -122.094436 kcal Electronic energy + Delta-G solvation = -25820.993099 eV Core-core repulsion = 22065.652434 eV Total energy + Delta-G solvation = -3755.340665 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.50063 -37.17298 -36.56167 -35.46526 -34.71289 -33.90922 -33.51899 -31.17992 -30.58344 -28.57791 -26.70447 -25.62111 -25.01589 -23.60949 -21.77782 -21.55086 -19.49444 -18.96785 -17.54828 -16.98658 -16.76627 -16.40154 -16.22534 -15.93599 -15.44689 -15.37604 -14.88895 -14.59645 -14.51551 -14.23569 -13.95607 -13.40594 -13.26430 -12.76288 -12.60374 -12.54676 -12.48570 -12.34520 -12.06778 -11.94566 -11.76729 -11.60829 -11.58112 -11.51063 -11.24419 -11.20115 -11.09519 -10.97682 -10.67326 -10.43547 -10.40135 -9.86268 -9.80454 -9.50369 -9.04606 -8.67842 -8.51751 -6.13853 -4.19562 0.76420 3.00451 3.24872 3.31216 3.33669 3.42553 3.54912 4.22054 4.34556 4.37276 4.50313 4.54121 4.69479 4.70715 4.76416 4.83569 4.91823 5.04408 5.12368 5.19868 5.21364 5.22603 5.25878 5.32151 5.35163 5.43106 5.55903 5.60665 5.62965 5.64048 5.68336 5.73398 5.76150 5.95755 5.97086 6.46202 6.60088 6.63244 6.89948 7.03823 7.28578 7.34801 7.78909 8.15869 8.83772 9.45286 10.97190 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.002919 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.543460 B = 9590.083029 C =10842.633073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.089 3.911 3 H 0.067 0.933 4 C 0.021 3.979 5 N -0.527 5.527 6 C 0.049 3.951 7 C 0.114 3.886 8 N -1.128 6.128 9 S 2.595 3.405 10 O -0.967 6.967 11 O -0.965 6.965 12 C -0.589 4.589 13 C 0.028 3.972 14 C -0.520 4.520 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.032 3.968 23 H 0.102 0.898 24 C -0.183 4.183 25 C 0.070 3.930 26 O -0.381 6.381 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.411 0.589 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.565 4.621 4.881 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.031 3.969 3 H 0.085 0.915 4 C -0.107 4.107 5 N -0.252 5.252 6 C -0.080 4.080 7 C -0.013 4.013 8 N -0.885 5.885 9 S 2.692 3.308 10 O -0.957 6.957 11 O -0.955 6.955 12 C -0.723 4.723 13 C -0.011 4.011 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.077 4.077 23 H 0.120 0.880 24 C -0.242 4.242 25 C -0.007 4.007 26 O -0.300 6.300 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.244 0.756 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.117 0.883 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.829 5.701 4.410 24.896 hybrid contribution 0.069 -2.014 0.648 2.117 sum -23.760 3.687 5.057 24.571 Atomic orbital electron populations 1.21745 0.92874 1.02901 1.02689 1.22135 0.94690 0.95737 0.84324 0.91482 1.22843 0.87808 1.00558 0.99539 1.62439 1.08925 1.51996 1.01846 1.22277 0.94181 0.98309 0.93198 1.21313 0.94223 1.00245 0.85506 1.55771 1.27669 1.77082 1.27972 1.05516 0.72643 0.76173 0.76463 1.93555 1.84461 1.80373 1.37354 1.93546 1.82516 1.32748 1.86647 1.30441 1.12056 1.14066 1.15687 1.18965 0.83380 0.99394 0.99385 1.20994 0.91689 1.28308 1.14996 0.92081 1.25070 0.97326 0.95941 0.96163 1.69955 1.05155 1.42156 1.35549 0.86468 0.78681 0.80551 0.81571 1.20485 1.20990 1.19763 1.22569 1.01491 0.92591 0.91024 0.88019 1.22371 1.02091 0.96918 1.02794 1.22681 0.80795 1.00271 0.96961 1.87971 1.21145 1.78325 1.42559 0.91942 0.91529 0.90945 0.89698 0.93321 0.93698 0.89623 0.89150 0.91754 0.75599 0.86383 0.86144 0.94828 0.94764 0.92510 0.92218 0.91578 0.91876 0.88252 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.57 37.16 0.36 -0.51 16 2 C 0.09 0.70 3.43 -26.68 -0.09 0.61 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 4 C 0.02 0.16 4.55 -3.71 -0.02 0.14 16 5 N -0.53 -4.77 4.78 -226.33 -1.08 -5.85 16 6 C 0.05 0.44 4.72 -3.82 -0.02 0.43 16 7 C 0.11 1.24 5.45 -4.04 -0.02 1.22 16 8 N -1.13 -13.84 5.89 -10.61 -0.06 -13.90 16 9 S 2.59 45.18 5.46 -107.50 -0.59 44.59 16 10 O -0.97 -19.74 18.08 -57.54 -1.04 -20.78 16 11 O -0.96 -19.79 17.50 -57.54 -1.01 -20.79 16 12 C -0.59 -10.96 6.01 37.16 0.22 -10.73 16 13 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 14 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 15 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.03 0.28 2.48 -67.60 -0.17 0.11 16 23 H 0.10 0.89 6.18 -51.93 -0.32 0.57 16 24 C -0.18 -1.53 8.31 37.16 0.31 -1.22 16 25 C 0.07 0.59 6.41 37.21 0.24 0.83 16 26 O -0.38 -3.65 9.99 -35.23 -0.35 -4.00 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.39 6.30 -51.93 -0.33 0.06 16 32 H 0.04 0.37 6.87 -51.93 -0.36 0.01 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.10 7.69 -51.93 -0.40 0.70 16 35 H 0.06 0.63 6.45 -51.93 -0.34 0.29 16 36 H 0.41 4.15 8.62 -34.47 -0.30 3.85 16 37 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 38 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.06 0.50 6.74 -51.93 -0.35 0.15 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.55 5.97 -51.93 -0.31 0.24 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -34.97 373.04 -10.27 -45.24 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.73 Total: 1.07 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 0.26 Total: -21.60 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.41 Total: -45.39 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.40 Total: -45.58 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 45.18 SS G_CDS: -0.59 Total: 44.59 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.97 -10.27 -45.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594816956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.853 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds