Wall clock time and date at job start Fri Apr 10 2020 18:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.53750 * 2 1 4 4 C 1.53096 * 109.50578 * 239.88765 * 2 1 3 5 5 N 1.47015 * 109.29000 * 183.23719 * 4 2 1 6 6 C 1.46899 * 111.00014 * 182.37313 * 5 4 2 7 7 C 1.53007 * 109.47417 * 183.86766 * 6 5 4 8 8 N 1.46498 * 109.47111 * 185.19496 * 7 6 5 9 9 S 1.65604 * 119.99860 * 165.00121 * 8 7 6 10 10 O 1.42098 * 104.27863 * 181.07124 * 9 8 7 11 11 O 1.42105 * 104.27487 * 308.92962 * 9 8 7 12 12 C 1.81396 * 104.44957 * 64.99797 * 9 8 7 13 13 C 1.52999 * 109.47011 * 180.02562 * 12 9 8 14 14 C 1.50701 * 109.47346 * 180.02562 * 13 12 9 15 15 H 1.08008 * 119.99557 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00448 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99754 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00526 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46965 * 89.99664 * 18 16 14 20 20 H 1.48489 * 109.47379 * 210.00071 * 18 16 14 21 21 H 1.48504 * 109.46701 * 330.00036 * 18 16 14 22 22 C 1.47018 * 110.75341 * 58.59595 * 5 4 2 23 23 H 1.09001 * 109.50552 * 181.44378 * 22 5 4 24 24 C 1.53000 * 109.50687 * 61.31628 * 22 5 4 25 25 C 1.53103 * 109.25614 * 301.38222 * 22 5 4 26 26 O 1.43011 * 109.25639 * 56.84695 * 25 22 5 27 27 H 1.09003 * 109.47285 * 180.10909 * 1 2 3 28 28 H 1.08998 * 109.47756 * 300.11402 * 1 2 3 29 29 H 1.09000 * 109.47350 * 60.11537 * 1 2 3 30 30 H 1.09002 * 109.50752 * 63.28841 * 4 2 1 31 31 H 1.09000 * 109.50685 * 303.19338 * 4 2 1 32 32 H 1.09000 * 109.46930 * 303.86505 * 6 5 4 33 33 H 1.08994 * 109.47306 * 63.86435 * 6 5 4 34 34 H 1.08997 * 109.46722 * 305.19410 * 7 6 5 35 35 H 1.09004 * 109.47072 * 65.19237 * 7 6 5 36 36 H 0.97001 * 120.00246 * 344.99751 * 8 7 6 37 37 H 1.09003 * 109.47060 * 300.00099 * 12 9 8 38 38 H 1.08999 * 109.47443 * 60.00220 * 12 9 8 39 39 H 1.09003 * 109.46983 * 299.99771 * 13 12 9 40 40 H 1.08997 * 109.47643 * 59.99812 * 13 12 9 41 41 H 0.96998 * 119.99863 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.46819 * 64.19790 * 24 22 5 43 43 H 1.08995 * 109.47141 * 184.19266 * 24 22 5 44 44 H 1.09000 * 109.46974 * 304.20193 * 24 22 5 45 45 H 1.08999 * 109.50360 * 176.78218 * 25 22 5 46 46 H 1.09000 * 109.50622 * 296.86959 * 25 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7240 -1.2483 5 7 3.5092 -0.7894 -1.2049 6 6 4.0438 -1.4284 -2.4148 7 6 5.5626 -1.5654 -2.2907 8 7 6.1099 -2.0879 -3.5451 9 16 7.7364 -1.9934 -3.8418 10 8 7.8905 -2.5628 -5.1346 11 8 8.0586 -0.6310 -3.5981 12 6 8.4889 -3.0604 -2.5825 13 6 10.0094 -3.0563 -2.7530 14 6 10.6346 -3.9432 -1.7072 15 1 10.0098 -4.4580 -0.9922 16 6 12.0039 -4.0975 -1.6632 17 7 12.7645 -3.4711 -2.5342 18 14 12.7789 -5.1963 -0.3665 19 1 12.8889 -6.5808 -0.8923 20 1 14.1319 -4.6858 -0.0294 21 1 11.9317 -5.1960 0.8532 22 6 3.9639 -1.4893 0.0054 23 1 5.0536 -1.5036 0.0299 24 6 3.4334 -2.9243 -0.0046 25 6 3.4343 -0.7570 1.2412 26 8 2.0085 -0.6756 1.1662 27 1 -0.3634 -1.0277 0.0020 28 1 -0.3634 0.5156 0.8889 29 1 -0.3634 0.5120 -0.8910 30 1 1.7274 -0.1796 -2.1390 31 1 1.6325 -1.7341 -1.2762 32 1 3.5982 -2.4164 -2.5309 33 1 3.8040 -0.8172 -3.2847 34 1 5.9996 -0.5888 -2.0825 35 1 5.8004 -2.2508 -1.4771 36 1 5.5196 -2.4892 -4.2020 37 1 8.2338 -2.6873 -1.5906 38 1 8.1130 -4.0772 -2.6960 39 1 10.2648 -3.4292 -3.7449 40 1 10.3851 -2.0395 -2.6393 41 1 13.7279 -3.5799 -2.5035 42 1 3.8666 -3.4660 -0.8454 43 1 3.7078 -3.4196 0.9268 44 1 2.3479 -2.9097 -0.1023 45 1 3.7209 -1.3043 2.1392 46 1 3.8555 0.2477 1.2773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594816956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:55 Heat of formation + Delta-G solvation = -150.483259 kcal Electronic energy + Delta-G solvation = -25822.224130 eV Core-core repulsion = 22065.652434 eV Total energy + Delta-G solvation = -3756.571697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15229 -38.22105 -37.82916 -37.01131 -35.88635 -35.64814 -34.10606 -33.11785 -31.26947 -29.32372 -27.58643 -27.33236 -25.71859 -24.31360 -23.58198 -22.33499 -20.39608 -20.08379 -19.10504 -18.27531 -17.80169 -17.34506 -17.11636 -17.09916 -16.68280 -16.51859 -16.25785 -15.78582 -15.51103 -15.02447 -14.93468 -14.75057 -14.46758 -13.94308 -13.72089 -13.50899 -13.22333 -13.17475 -13.11330 -13.08174 -12.99051 -12.93087 -12.85967 -12.78346 -12.70174 -12.41062 -12.23750 -12.12609 -11.93761 -11.88808 -11.72210 -11.32734 -11.15671 -10.64173 -10.53295 -10.32875 -9.33066 -8.25530 -6.39373 -0.68149 1.41399 1.43027 1.54098 1.80763 2.38332 2.74714 2.82316 2.89823 3.08154 3.28278 3.68839 3.86658 3.88105 3.97924 4.03194 4.13029 4.14197 4.21704 4.22904 4.39897 4.45684 4.50580 4.59411 4.65335 4.73008 4.76588 4.77264 4.80310 4.87122 4.95880 4.99095 5.08245 5.12464 5.27956 5.28611 5.29681 5.33820 5.69118 5.94214 5.97457 6.06736 6.12800 6.27740 6.74587 7.30873 8.86771 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.002919 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.543460 B = 9590.083029 C =10842.633073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.085 3.915 3 H 0.061 0.939 4 C 0.023 3.977 5 N -0.538 5.538 6 C 0.055 3.945 7 C 0.106 3.894 8 N -1.106 6.106 9 S 2.624 3.376 10 O -0.999 6.999 11 O -0.997 6.997 12 C -0.587 4.587 13 C 0.019 3.981 14 C -0.537 4.537 15 H 0.077 0.923 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.973 3.027 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.256 1.256 22 C 0.029 3.971 23 H 0.101 0.899 24 C -0.178 4.178 25 C 0.068 3.932 26 O -0.396 6.396 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.425 0.575 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.006 0.994 40 H 0.007 0.993 41 H 0.267 0.733 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.110 0.890 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.405 3.600 6.102 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 H 0.079 0.921 4 C -0.105 4.105 5 N -0.263 5.263 6 C -0.074 4.074 7 C -0.020 4.020 8 N -0.868 5.868 9 S 2.720 3.280 10 O -0.989 6.989 11 O -0.987 6.987 12 C -0.719 4.719 13 C -0.020 4.020 14 C -0.576 4.576 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.574 5.574 18 Si 0.797 3.203 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.180 1.180 22 C -0.080 4.080 23 H 0.119 0.881 24 C -0.237 4.237 25 C -0.009 4.009 26 O -0.315 6.315 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.262 0.738 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.128 0.872 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.690 4.671 5.629 26.711 hybrid contribution 0.556 -1.641 0.264 1.752 sum -25.133 3.030 5.894 25.992 Atomic orbital electron populations 1.21742 0.91505 1.03035 1.03486 1.22268 0.95784 0.95292 0.83962 0.92052 1.22866 0.86978 1.00746 0.99913 1.62436 1.09754 1.52219 1.01848 1.22210 0.92574 0.99216 0.93450 1.21522 0.95576 1.00005 0.84873 1.55188 1.25552 1.76946 1.29133 1.04349 0.73531 0.74913 0.75194 1.93506 1.85602 1.80676 1.39091 1.93506 1.83815 1.34534 1.86843 1.30329 1.07529 1.16269 1.17816 1.18825 0.88074 0.97391 0.97665 1.21521 0.92352 1.28306 1.15464 0.90528 1.26120 0.98193 0.97515 0.98494 1.70104 1.05507 1.44082 1.37754 0.85318 0.77612 0.78374 0.78984 1.19698 1.20953 1.18026 1.22598 1.01453 0.92874 0.91028 0.88100 1.22319 1.01718 0.96593 1.03022 1.22745 0.80490 1.00253 0.97435 1.87956 1.21604 1.78553 1.43409 0.92079 0.91664 0.89260 0.88583 0.93232 0.92362 0.89213 0.90441 0.90103 0.73808 0.83950 0.83811 0.97568 0.97451 0.92431 0.92063 0.91262 0.92343 0.87246 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.57 71.98 0.69 -0.76 16 2 C 0.08 1.22 3.43 30.63 0.10 1.32 16 3 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 4 C 0.02 0.31 4.55 86.31 0.39 0.70 16 5 N -0.54 -8.68 4.78 -869.98 -4.16 -12.84 16 6 C 0.05 0.84 4.72 86.31 0.41 1.25 16 7 C 0.11 2.08 5.45 86.38 0.47 2.55 16 8 N -1.11 -24.88 5.89 -187.48 -1.10 -25.98 16 9 S 2.62 89.89 5.46 -56.49 -0.31 89.58 16 10 O -1.00 -40.64 18.08 -127.65 -2.31 -42.95 16 11 O -1.00 -41.03 17.50 -127.65 -2.23 -43.26 16 12 C -0.59 -21.23 6.01 71.98 0.43 -20.80 16 13 C 0.02 1.00 4.98 29.85 0.15 1.14 16 14 C -0.54 -29.34 9.11 25.60 0.23 -29.11 16 15 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 16 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 17 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 18 Si 0.97 42.87 29.54 68.60 2.03 44.89 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 22 C 0.03 0.45 2.48 44.93 0.11 0.57 16 23 H 0.10 1.57 6.18 -2.39 -0.01 1.56 16 24 C -0.18 -2.59 8.31 71.98 0.60 -1.99 16 25 C 0.07 1.07 6.41 72.02 0.46 1.53 16 26 O -0.40 -7.10 9.99 -148.98 -1.49 -8.59 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 0.68 6.30 -2.39 -0.02 0.66 16 32 H 0.06 0.77 6.87 -2.39 -0.02 0.75 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.77 7.69 -2.39 -0.02 1.75 16 35 H 0.08 1.35 6.45 -2.38 -0.02 1.33 16 36 H 0.43 7.50 8.62 -96.74 -0.83 6.67 16 37 H 0.14 4.40 8.14 -2.39 -0.02 4.38 16 38 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.06 0.86 6.74 -2.39 -0.02 0.85 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 44 H 0.06 0.91 5.97 -2.39 -0.01 0.90 16 45 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -75.99 373.04 -4.65 -80.64 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.13 Total: 18.32 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 4.51 Total: -43.41 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -4.98 Total: -95.22 kcal Atomic # 8 Polarization: -88.77 SS G_CDS: -6.03 Total: -94.80 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 89.89 SS G_CDS: -0.31 Total: 89.58 kcal Total: -75.99 -4.65 -80.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594816956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.846 kcal (2) G-P(sol) polarization free energy of solvation -75.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds