Wall clock time and date at job start Fri Apr 10 2020 18:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46944 * 2 1 4 4 C 1.50701 * 109.47088 * 119.99590 * 2 1 3 5 5 H 1.08000 * 120.00188 * 119.99296 * 4 2 1 6 6 C 1.37881 * 120.00123 * 300.00521 * 4 2 1 7 7 N 1.31508 * 120.00094 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99816 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47269 * 90.00175 * 8 6 4 10 10 H 1.48500 * 109.47086 * 210.00255 * 8 6 4 11 11 H 1.48507 * 109.47096 * 329.99866 * 8 6 4 12 12 N 1.46494 * 109.47448 * 239.99754 * 2 1 3 13 13 C 1.46504 * 119.99742 * 300.00474 * 12 2 1 14 14 S 1.65599 * 120.00381 * 120.00110 * 12 2 1 15 15 O 1.42104 * 106.39905 * 336.46012 * 14 12 2 16 16 O 1.42095 * 106.40452 * 203.54281 * 14 12 2 17 17 N 1.65602 * 107.21657 * 89.99744 * 14 12 2 18 18 C 1.46498 * 119.99612 * 65.28266 * 17 14 12 19 19 C 1.53001 * 109.47089 * 164.71987 * 18 17 14 20 20 H 1.09004 * 109.47035 * 55.00090 * 19 18 17 21 21 C 1.52996 * 109.47355 * 294.99809 * 19 18 17 22 22 O 1.42907 * 109.46849 * 64.99720 * 21 19 18 23 23 C 1.53000 * 109.47008 * 174.99534 * 19 18 17 24 24 C 1.53002 * 109.47065 * 185.00174 * 23 19 18 25 25 C 1.53001 * 117.50020 * 243.75189 * 24 23 19 26 26 C 1.53001 * 117.50008 * 175.09168 * 24 23 19 27 27 H 1.09000 * 109.46793 * 60.00278 * 1 2 3 28 28 H 1.08995 * 109.47436 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47366 * 300.00529 * 1 2 3 30 30 H 0.97002 * 120.00200 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46746 * 269.99398 * 13 12 2 32 32 H 1.08995 * 109.47307 * 29.99413 * 13 12 2 33 33 H 1.09005 * 109.46998 * 149.99889 * 13 12 2 34 34 H 0.97001 * 119.99942 * 244.99790 * 17 14 12 35 35 H 1.08996 * 109.46882 * 284.72133 * 18 17 14 36 36 H 1.08999 * 109.47498 * 44.72066 * 18 17 14 37 37 H 1.08996 * 109.46983 * 184.99812 * 21 19 18 38 38 H 1.08999 * 109.46915 * 304.99931 * 21 19 18 39 39 H 0.96697 * 113.99533 * 179.97438 * 22 21 19 40 40 H 1.09002 * 109.47518 * 305.00270 * 23 19 18 41 41 H 1.08994 * 109.46925 * 65.00542 * 23 19 18 42 42 H 1.09002 * 115.55133 * 29.41949 * 24 23 19 43 43 H 1.09001 * 117.49523 * 359.97438 * 25 24 23 44 44 H 1.08996 * 117.50297 * 145.01924 * 25 24 23 45 45 H 1.09003 * 117.49723 * 214.97894 * 26 24 23 46 46 H 1.08997 * 117.49723 * 359.96933 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1371 -0.8594 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8746 2.6992 10 1 0.9769 1.9955 3.9069 11 1 0.8490 2.1774 1.4921 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 2.6904 1.4972 -2.1193 16 8 2.8229 -0.5647 -3.5257 17 7 4.5438 -0.1043 -1.8178 18 6 5.1376 -1.4432 -1.8470 19 6 6.6599 -1.3284 -1.7444 20 1 6.9219 -0.7561 -0.8545 21 6 7.2026 -0.6178 -2.9859 22 8 6.7228 0.7280 -3.0123 23 6 7.2716 -2.7276 -1.6492 24 6 8.7800 -2.6103 -1.4215 25 6 9.7037 -3.1569 -2.5119 26 6 9.5613 -3.9041 -1.1835 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9030 -0.5278 4.4376 31 1 2.4157 -2.7377 -0.9715 32 1 0.6905 -2.3002 -0.9845 33 1 1.6238 -2.2853 -2.5001 34 1 5.0734 0.6550 -1.5280 35 1 4.7598 -2.0266 -1.0074 36 1 4.8728 -1.9379 -2.7815 37 1 8.2921 -0.6147 -2.9555 38 1 6.8656 -1.1413 -3.8806 39 1 7.0283 1.2395 -3.7739 40 1 6.8192 -3.2661 -0.8165 41 1 7.0852 -3.2694 -2.5764 42 1 9.1067 -1.7193 -0.8854 43 1 9.2367 -3.6005 -3.3913 44 1 10.6381 -2.6258 -2.6929 45 1 10.4021 -3.8641 -0.4910 46 1 9.0005 -4.8388 -1.1887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594866948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:58 Heat of formation + Delta-G solvation = -103.784601 kcal Electronic energy + Delta-G solvation = -26779.508660 eV Core-core repulsion = 23024.961969 eV Total energy + Delta-G solvation = -3754.546691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.75717 -36.94999 -36.65288 -36.33616 -35.23255 -34.97079 -32.48262 -32.08489 -29.97059 -26.50997 -25.76557 -25.31434 -24.96380 -22.56204 -21.06942 -20.84863 -20.38361 -18.61321 -17.48072 -17.20924 -16.78268 -16.43083 -15.92587 -15.84354 -15.50230 -15.07211 -14.46252 -14.18122 -14.08902 -13.54487 -13.32615 -13.10815 -12.71080 -12.66028 -12.42108 -12.25566 -12.07506 -11.93999 -11.83857 -11.74167 -11.51652 -11.44178 -11.33326 -11.18727 -11.06356 -10.99016 -10.87093 -10.43177 -10.31061 -10.10505 -10.07342 -9.89803 -9.56695 -9.39776 -8.91343 -8.63188 -8.04451 -6.14036 -4.14350 1.30400 3.25229 3.38033 3.41202 3.52632 3.60355 4.08239 4.25269 4.36190 4.39142 4.69856 4.75035 4.84254 4.99467 5.06108 5.13345 5.18132 5.33869 5.41922 5.48780 5.54575 5.56945 5.63042 5.64494 5.71039 5.82118 5.90254 6.01415 6.08899 6.13378 6.18948 6.24607 6.28155 6.39768 6.46024 6.58592 6.61301 6.89101 7.32743 7.38396 7.56477 7.66205 7.75620 8.46152 8.89174 9.47565 10.98438 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014057 B = 0.004258 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.442701 B = 6573.995414 C = 7567.380079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.239 3.761 3 H 0.057 0.943 4 C -0.523 4.523 5 H 0.082 0.918 6 C 0.075 3.925 7 N -0.895 5.895 8 Si 0.876 3.124 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.261 1.261 12 N -0.988 5.988 13 C 0.098 3.902 14 S 2.788 3.212 15 O -0.987 6.987 16 O -1.001 7.001 17 N -1.111 6.111 18 C 0.132 3.868 19 C -0.091 4.091 20 H 0.089 0.911 21 C 0.084 3.916 22 O -0.567 6.567 23 C -0.083 4.083 24 C -0.150 4.150 25 C -0.184 4.184 26 C -0.181 4.181 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.265 0.735 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.420 0.580 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.375 0.625 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.075 -4.096 -12.103 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.562 4.562 5 H 0.100 0.900 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.706 3.294 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.829 5.829 13 C -0.048 4.048 14 S 2.797 3.203 15 O -0.972 6.972 16 O -0.984 6.984 17 N -0.873 5.873 18 C 0.005 3.995 19 C -0.111 4.111 20 H 0.107 0.893 21 C 0.006 3.994 22 O -0.372 6.372 23 C -0.121 4.121 24 C -0.168 4.168 25 C -0.221 4.221 26 C -0.218 4.218 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.255 0.745 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.222 0.778 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.374 -3.963 -12.184 17.132 hybrid contribution 0.109 0.933 0.360 1.006 sum 11.483 -3.030 -11.824 16.759 Atomic orbital electron populations 1.22430 0.99017 1.01255 0.99193 1.19058 0.90831 0.93419 0.83262 0.92576 1.21215 1.32501 1.14233 0.88289 0.90005 1.24888 0.95607 0.96521 0.95768 1.69871 1.45329 1.40147 0.97932 0.87024 0.80760 0.84056 0.77535 1.20356 1.22214 1.18588 1.57457 1.65127 1.21488 1.38796 1.21310 1.02025 0.81599 0.99883 1.01532 0.72697 0.72842 0.73250 1.93570 1.84015 1.32640 1.86935 1.93514 1.86314 1.76438 1.42149 1.55690 1.31136 1.15107 1.85327 1.21134 0.92793 0.84067 1.01544 1.21391 0.94666 0.96105 0.98966 0.89314 1.22221 0.96856 0.82881 0.97425 1.86468 1.76161 1.24165 1.50435 1.21141 0.92469 0.95776 1.02736 1.22357 0.93364 0.98018 1.03039 1.23062 1.01503 1.04513 0.93029 1.22978 1.02991 0.96273 0.99564 0.94688 0.92264 0.93295 0.92533 0.93489 0.90695 0.91886 0.74468 0.91364 0.91377 0.93511 0.93800 0.77813 0.90068 0.91309 0.87655 0.88846 0.89149 0.88957 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.65 37.16 0.32 -3.18 16 2 C 0.24 5.64 2.21 -69.08 -0.15 5.49 16 3 H 0.06 1.41 5.97 -51.93 -0.31 1.10 16 4 C -0.52 -13.87 8.95 -34.44 -0.31 -14.18 16 5 H 0.08 2.30 7.89 -52.49 -0.41 1.88 16 6 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.90 -26.25 13.96 55.43 0.77 -25.48 16 8 Si 0.88 21.51 24.37 -169.99 -4.14 17.36 16 9 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.26 -6.31 6.53 56.52 0.37 -5.95 16 12 N -0.99 -20.12 3.12 -115.85 -0.36 -20.48 16 13 C 0.10 1.71 9.90 59.85 0.59 2.30 16 14 S 2.79 54.68 6.15 -107.50 -0.66 54.02 16 15 O -0.99 -22.39 16.70 -57.17 -0.95 -23.34 16 16 O -1.00 -20.22 16.20 -57.17 -0.93 -21.15 16 17 N -1.11 -18.41 5.12 -10.61 -0.05 -18.46 16 18 C 0.13 1.84 5.64 -4.04 -0.02 1.82 16 19 C -0.09 -1.03 2.21 -90.62 -0.20 -1.23 16 20 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 21 C 0.08 0.85 6.32 37.16 0.23 1.09 16 22 O -0.57 -6.46 11.20 -35.23 -0.39 -6.85 16 23 C -0.08 -0.78 4.96 -26.73 -0.13 -0.91 16 24 C -0.15 -1.28 4.64 -90.62 -0.42 -1.71 16 25 C -0.18 -1.38 10.18 -26.69 -0.27 -1.65 16 26 C -0.18 -1.43 10.25 -26.69 -0.27 -1.71 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.21 6.66 -51.93 -0.35 0.86 16 29 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.28 6.43 -51.93 -0.33 0.95 16 33 H 0.06 0.99 7.02 -51.93 -0.36 0.63 16 34 H 0.42 6.82 7.23 -34.47 -0.25 6.57 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.91 7.74 -51.93 -0.40 0.51 16 37 H 0.05 0.40 7.23 -51.93 -0.38 0.03 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.38 2.73 9.12 45.56 0.42 3.15 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.58 7.87 -51.93 -0.41 0.18 16 42 H 0.11 0.94 8.08 -51.93 -0.42 0.52 16 43 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -33.44 370.82 -8.64 -42.08 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.78 Total: 8.60 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -0.73 Total: -11.88 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: 0.36 Total: -64.42 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -2.28 Total: -51.35 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.36 kcal Atomic # 16 Polarization: 54.68 SS G_CDS: -0.66 Total: 54.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.44 -8.64 -42.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594866948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.700 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds