Wall clock time and date at job start Fri Apr 10 2020 18:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46944 * 2 1 4 4 C 1.50701 * 109.47088 * 119.99590 * 2 1 3 5 5 H 1.08000 * 120.00188 * 119.99296 * 4 2 1 6 6 C 1.37881 * 120.00123 * 300.00521 * 4 2 1 7 7 N 1.31508 * 120.00094 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99816 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47269 * 90.00175 * 8 6 4 10 10 H 1.48500 * 109.47086 * 210.00255 * 8 6 4 11 11 H 1.48507 * 109.47096 * 329.99866 * 8 6 4 12 12 N 1.46494 * 109.47448 * 239.99754 * 2 1 3 13 13 C 1.46504 * 119.99742 * 300.00474 * 12 2 1 14 14 S 1.65599 * 120.00381 * 120.00110 * 12 2 1 15 15 O 1.42104 * 106.39905 * 336.46012 * 14 12 2 16 16 O 1.42095 * 106.40452 * 203.54281 * 14 12 2 17 17 N 1.65602 * 107.21657 * 89.99744 * 14 12 2 18 18 C 1.46498 * 119.99612 * 65.28266 * 17 14 12 19 19 C 1.53001 * 109.47089 * 164.71987 * 18 17 14 20 20 H 1.09004 * 109.47035 * 55.00090 * 19 18 17 21 21 C 1.52996 * 109.47355 * 294.99809 * 19 18 17 22 22 O 1.42907 * 109.46849 * 64.99720 * 21 19 18 23 23 C 1.53000 * 109.47008 * 174.99534 * 19 18 17 24 24 C 1.53002 * 109.47065 * 185.00174 * 23 19 18 25 25 C 1.53001 * 117.50020 * 243.75189 * 24 23 19 26 26 C 1.53001 * 117.50008 * 175.09168 * 24 23 19 27 27 H 1.09000 * 109.46793 * 60.00278 * 1 2 3 28 28 H 1.08995 * 109.47436 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47366 * 300.00529 * 1 2 3 30 30 H 0.97002 * 120.00200 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46746 * 269.99398 * 13 12 2 32 32 H 1.08995 * 109.47307 * 29.99413 * 13 12 2 33 33 H 1.09005 * 109.46998 * 149.99889 * 13 12 2 34 34 H 0.97001 * 119.99942 * 244.99790 * 17 14 12 35 35 H 1.08996 * 109.46882 * 284.72133 * 18 17 14 36 36 H 1.08999 * 109.47498 * 44.72066 * 18 17 14 37 37 H 1.08996 * 109.46983 * 184.99812 * 21 19 18 38 38 H 1.08999 * 109.46915 * 304.99931 * 21 19 18 39 39 H 0.96697 * 113.99533 * 179.97438 * 22 21 19 40 40 H 1.09002 * 109.47518 * 305.00270 * 23 19 18 41 41 H 1.08994 * 109.46925 * 65.00542 * 23 19 18 42 42 H 1.09002 * 115.55133 * 29.41949 * 24 23 19 43 43 H 1.09001 * 117.49523 * 359.97438 * 25 24 23 44 44 H 1.08996 * 117.50297 * 145.01924 * 25 24 23 45 45 H 1.09003 * 117.49723 * 214.97894 * 26 24 23 46 46 H 1.08997 * 117.49723 * 359.96933 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1371 -0.8594 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8746 2.6992 10 1 0.9769 1.9955 3.9069 11 1 0.8490 2.1774 1.4921 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 2.6904 1.4972 -2.1193 16 8 2.8229 -0.5647 -3.5257 17 7 4.5438 -0.1043 -1.8178 18 6 5.1376 -1.4432 -1.8470 19 6 6.6599 -1.3284 -1.7444 20 1 6.9219 -0.7561 -0.8545 21 6 7.2026 -0.6178 -2.9859 22 8 6.7228 0.7280 -3.0123 23 6 7.2716 -2.7276 -1.6492 24 6 8.7800 -2.6103 -1.4215 25 6 9.7037 -3.1569 -2.5119 26 6 9.5613 -3.9041 -1.1835 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9030 -0.5278 4.4376 31 1 2.4157 -2.7377 -0.9715 32 1 0.6905 -2.3002 -0.9845 33 1 1.6238 -2.2853 -2.5001 34 1 5.0734 0.6550 -1.5280 35 1 4.7598 -2.0266 -1.0074 36 1 4.8728 -1.9379 -2.7815 37 1 8.2921 -0.6147 -2.9555 38 1 6.8656 -1.1413 -3.8806 39 1 7.0283 1.2395 -3.7739 40 1 6.8192 -3.2661 -0.8165 41 1 7.0852 -3.2694 -2.5764 42 1 9.1067 -1.7193 -0.8854 43 1 9.2367 -3.6005 -3.3913 44 1 10.6381 -2.6258 -2.6929 45 1 10.4021 -3.8641 -0.4910 46 1 9.0005 -4.8388 -1.1887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594866948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:57 Heat of formation + Delta-G solvation = -130.130773 kcal Electronic energy + Delta-G solvation = -26780.651116 eV Core-core repulsion = 23024.961969 eV Total energy + Delta-G solvation = -3755.689147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.57843 -38.33697 -38.05637 -37.67607 -36.88376 -36.02409 -34.50172 -33.11933 -31.77308 -27.41264 -27.26339 -26.90091 -26.37106 -23.14838 -22.68198 -21.89824 -21.24270 -20.09840 -19.04511 -18.50471 -18.32503 -18.00677 -17.37374 -16.95959 -16.67310 -16.30162 -15.75788 -15.32146 -15.11576 -15.00183 -14.83536 -14.54587 -14.20937 -14.05649 -13.78708 -13.62797 -13.51367 -13.44407 -13.17475 -13.05138 -12.93609 -12.77151 -12.71203 -12.53920 -12.31496 -12.15700 -12.00728 -11.89859 -11.75457 -11.46521 -11.32266 -11.02115 -10.83884 -10.73751 -10.63610 -10.23434 -9.71814 -8.27925 -6.30744 -0.25403 1.30807 1.39920 1.47587 2.03236 2.32720 2.62502 2.96584 3.06978 3.38732 3.44257 3.65344 3.90093 4.02155 4.09664 4.14310 4.22960 4.32687 4.44796 4.53442 4.53989 4.64560 4.65536 4.70726 4.76247 4.78065 4.81343 4.85698 4.89115 4.94316 5.07886 5.10820 5.14254 5.17029 5.21863 5.30867 5.33744 5.47110 5.50893 5.58768 5.85365 6.29461 6.37487 6.73882 7.01193 7.34213 8.87398 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014057 B = 0.004258 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.442701 B = 6573.995414 C = 7567.380079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.241 3.759 3 H 0.041 0.959 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.026 3.974 7 N -0.937 5.937 8 Si 0.924 3.076 9 H -0.260 1.260 10 H -0.297 1.297 11 H -0.257 1.257 12 N -0.993 5.993 13 C 0.092 3.908 14 S 2.801 3.199 15 O -1.019 7.019 16 O -1.005 7.005 17 N -1.105 6.105 18 C 0.125 3.875 19 C -0.087 4.087 20 H 0.074 0.926 21 C 0.085 3.915 22 O -0.590 6.590 23 C -0.077 4.077 24 C -0.160 4.160 25 C -0.173 4.173 26 C -0.185 4.185 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.266 0.734 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.421 0.579 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.392 0.608 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.291 -4.282 -13.583 18.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.135 3.865 3 H 0.058 0.942 4 C -0.553 4.553 5 H 0.075 0.925 6 C -0.173 4.173 7 N -0.577 5.577 8 Si 0.752 3.248 9 H -0.186 1.186 10 H -0.225 1.225 11 H -0.181 1.181 12 N -0.834 5.834 13 C -0.053 4.053 14 S 2.810 3.190 15 O -1.003 7.003 16 O -0.988 6.988 17 N -0.869 5.869 18 C -0.001 4.001 19 C -0.107 4.107 20 H 0.092 0.908 21 C 0.008 3.992 22 O -0.398 6.398 23 C -0.115 4.115 24 C -0.178 4.178 25 C -0.210 4.210 26 C -0.222 4.222 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.258 0.742 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.241 0.759 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.583 -4.157 -13.698 18.414 hybrid contribution 0.140 0.918 0.766 1.204 sum 11.723 -3.239 -12.932 17.753 Atomic orbital electron populations 1.22390 0.97347 1.02393 0.99863 1.18833 0.92153 0.92424 0.83134 0.94152 1.21379 1.31252 1.13147 0.89523 0.92488 1.25549 0.97014 0.99068 0.95621 1.69985 1.47261 1.41984 0.98461 0.86234 0.80141 0.81087 0.77338 1.18591 1.22470 1.18108 1.57421 1.65740 1.22568 1.37633 1.21503 1.02370 0.80134 1.01289 1.01046 0.73039 0.71904 0.73052 1.93521 1.84827 1.34640 1.87319 1.93502 1.86687 1.76332 1.42312 1.55501 1.29995 1.16324 1.85035 1.21353 0.94629 0.82561 1.01607 1.21364 0.92778 0.97374 0.99212 0.90758 1.22242 0.97824 0.82381 0.96767 1.86413 1.76742 1.24901 1.51786 1.21076 0.92945 0.94436 1.03047 1.22278 0.92890 0.98313 1.04332 1.23130 1.01354 1.03694 0.92833 1.23050 1.02955 0.95962 1.00223 0.92654 0.91002 0.93928 0.92506 0.92974 0.90355 0.89910 0.74225 0.92299 0.90443 0.91679 0.93126 0.75867 0.90942 0.90046 0.88217 0.88106 0.88302 0.88594 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.73 8.65 71.98 0.62 -6.11 16 2 C 0.24 11.15 2.21 44.25 0.10 11.25 16 3 H 0.04 2.02 5.97 -2.39 -0.01 2.01 16 4 C -0.51 -27.32 8.95 25.60 0.23 -27.09 16 5 H 0.06 3.26 7.89 -2.91 -0.02 3.23 16 6 C 0.03 1.47 5.45 84.66 0.46 1.93 16 7 N -0.94 -55.68 13.96 21.45 0.30 -55.38 16 8 Si 0.92 43.82 24.37 68.60 1.67 45.49 16 9 H -0.26 -11.57 6.87 99.48 0.68 -10.89 16 10 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 11 H -0.26 -11.89 6.53 99.48 0.65 -11.24 16 12 N -0.99 -39.54 3.12 -520.45 -1.62 -41.16 16 13 C 0.09 3.09 9.90 127.77 1.27 4.36 16 14 S 2.80 107.49 6.15 -56.49 -0.35 107.14 16 15 O -1.02 -45.70 16.70 -128.00 -2.14 -47.84 16 16 O -1.00 -39.02 16.20 -128.00 -2.07 -41.09 16 17 N -1.10 -36.13 5.12 -187.50 -0.96 -37.09 16 18 C 0.12 3.41 5.64 86.38 0.49 3.89 16 19 C -0.09 -1.90 2.21 -10.79 -0.02 -1.93 16 20 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 21 C 0.09 1.59 6.32 71.98 0.46 2.05 16 22 O -0.59 -12.71 11.20 -148.98 -1.67 -14.37 16 23 C -0.08 -1.35 4.96 30.59 0.15 -1.20 16 24 C -0.16 -2.53 4.64 -10.79 -0.05 -2.58 16 25 C -0.17 -2.21 10.18 30.62 0.31 -1.89 16 26 C -0.18 -2.66 10.25 30.62 0.31 -2.34 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 2.78 6.66 -2.39 -0.02 2.76 16 29 H 0.04 1.83 3.27 -2.39 -0.01 1.82 16 30 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 2.56 6.43 -2.39 -0.02 2.54 16 33 H 0.08 2.44 7.02 -2.38 -0.02 2.42 16 34 H 0.42 13.65 7.23 -96.74 -0.70 12.96 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.97 7.74 -2.39 -0.02 1.95 16 37 H 0.07 0.98 7.23 -2.39 -0.02 0.96 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.39 5.13 9.12 -74.06 -0.68 4.46 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.22 7.87 -2.39 -0.02 1.20 16 42 H 0.10 1.69 8.08 -2.39 -0.02 1.67 16 43 H 0.10 1.15 8.03 -2.39 -0.02 1.13 16 44 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -70.09 370.82 -2.98 -73.08 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: -0.47 Total: 30.91 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 4.32 Total: -19.68 kcal Atomic # 7 Polarization: -131.36 SS G_CDS: -2.28 Total: -133.64 kcal Atomic # 8 Polarization: -97.43 SS G_CDS: -5.88 Total: -103.31 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.67 Total: 45.49 kcal Atomic # 16 Polarization: 107.49 SS G_CDS: -0.35 Total: 107.14 kcal Total: -70.09 -2.98 -73.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594866948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.054 kcal (2) G-P(sol) polarization free energy of solvation -70.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds