Wall clock time and date at job start Fri Apr 10 2020 18:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46752 * 2 1 4 4 C 1.50693 * 109.47032 * 120.00131 * 2 1 3 5 5 H 1.08001 * 120.00128 * 120.00635 * 4 2 1 6 6 C 1.37884 * 120.00245 * 299.99810 * 4 2 1 7 7 N 1.31518 * 119.99582 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99934 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47283 * 60.00389 * 8 6 4 10 10 H 1.48503 * 109.47078 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47573 * 299.99945 * 8 6 4 12 12 N 1.46498 * 109.47213 * 240.00667 * 2 1 3 13 13 C 1.46509 * 119.99735 * 299.99591 * 12 2 1 14 14 S 1.65599 * 120.00433 * 119.99874 * 12 2 1 15 15 O 1.42102 * 106.40136 * 203.53743 * 14 12 2 16 16 O 1.42099 * 106.39861 * 336.45906 * 14 12 2 17 17 N 1.65601 * 107.21562 * 89.99707 * 14 12 2 18 18 C 1.46501 * 120.00099 * 65.00583 * 17 14 12 19 19 C 1.52995 * 109.46946 * 164.99820 * 18 17 14 20 20 H 1.09002 * 109.47614 * 304.99350 * 19 18 17 21 21 C 1.53003 * 109.47533 * 64.99845 * 19 18 17 22 22 O 1.42897 * 109.47422 * 185.24991 * 21 19 18 23 23 C 1.53005 * 109.47054 * 184.99813 * 19 18 17 24 24 C 1.52993 * 109.47293 * 64.95784 * 23 19 18 25 25 C 1.53004 * 117.50188 * 243.72635 * 24 23 19 26 26 C 1.52998 * 117.49975 * 175.06359 * 24 23 19 27 27 H 1.09004 * 109.46832 * 59.99877 * 1 2 3 28 28 H 1.08997 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47130 * 299.99975 * 1 2 3 30 30 H 0.96995 * 119.99616 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.46819 * 90.00209 * 13 12 2 32 32 H 1.08998 * 109.47032 * 210.00343 * 13 12 2 33 33 H 1.09001 * 109.46982 * 330.00158 * 13 12 2 34 34 H 0.97004 * 119.99718 * 244.99585 * 17 14 12 35 35 H 1.09004 * 109.46654 * 284.99320 * 18 17 14 36 36 H 1.08995 * 109.47197 * 44.99251 * 18 17 14 37 37 H 1.09000 * 109.46469 * 305.25201 * 21 19 18 38 38 H 1.09000 * 109.47347 * 65.24927 * 21 19 18 39 39 H 0.96693 * 114.00168 * 179.97438 * 22 21 19 40 40 H 1.09001 * 109.47227 * 184.96463 * 23 19 18 41 41 H 1.09007 * 109.47085 * 304.96000 * 23 19 18 42 42 H 1.09001 * 115.54624 * 29.39333 * 24 23 19 43 43 H 1.08993 * 117.49588 * 359.97438 * 25 24 23 44 44 H 1.09004 * 117.49872 * 145.02029 * 25 24 23 45 45 H 1.09001 * 117.49686 * 214.97764 * 26 24 23 46 46 H 1.08998 * 117.49893 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1196 4.0078 9 1 3.8075 -1.1190 4.0076 10 1 1.8269 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0081 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1144 -2.2863 15 8 2.8228 -0.5644 -3.5259 16 8 2.6903 1.4974 -2.1192 17 7 4.5437 -0.1040 -1.8180 18 6 5.1358 -1.4439 -1.8416 19 6 6.6577 -1.3308 -1.7335 20 1 7.0305 -0.6771 -2.5221 21 6 7.0303 -0.7477 -0.3690 22 8 8.4413 -0.5280 -0.3139 23 6 7.2841 -2.7187 -1.8832 24 6 7.0159 -3.2500 -3.2926 25 6 6.1554 -4.5086 -3.4214 26 6 7.6623 -4.5814 -3.6807 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7082 1.1608 3.4844 31 1 0.7376 -2.1443 -1.9995 32 1 2.4630 -2.5817 -1.9865 33 1 1.5296 -2.5968 -0.4709 34 1 5.0734 0.6552 -1.5282 35 1 4.7541 -2.0246 -1.0018 36 1 4.8737 -1.9405 -2.7758 37 1 6.5093 0.1987 -0.2239 38 1 6.7405 -1.4461 0.4161 39 1 8.7493 -0.1581 0.5247 40 1 8.3596 -2.6517 -1.7187 41 1 6.8460 -3.3961 -1.1501 42 1 6.9187 -2.4922 -4.0701 43 1 5.7807 -4.9582 -2.5019 44 1 5.4924 -4.5789 -4.2838 45 1 7.9899 -4.6996 -4.7135 46 1 8.2790 -5.0786 -2.9319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594866950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:01 Heat of formation + Delta-G solvation = -115.889789 kcal Electronic energy + Delta-G solvation = -26912.390760 eV Core-core repulsion = 23157.319149 eV Total energy + Delta-G solvation = -3755.071611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.72464 -36.86862 -36.66668 -36.15613 -35.29535 -35.23814 -32.62883 -31.91763 -29.10046 -26.75296 -25.57211 -25.21907 -25.18060 -22.42624 -20.98601 -20.81608 -20.26195 -18.85089 -17.67107 -17.08532 -16.67491 -16.40835 -15.91720 -15.67362 -15.28348 -15.08039 -14.45698 -14.26985 -13.86914 -13.50765 -13.23296 -13.11127 -13.05824 -12.68310 -12.32823 -11.99640 -11.81044 -11.71358 -11.63430 -11.52201 -11.41050 -11.37317 -11.23761 -11.13634 -10.99310 -10.91207 -10.82995 -10.46375 -10.26074 -10.24155 -10.10141 -10.01013 -9.82322 -9.38008 -9.11358 -8.51721 -7.98235 -6.12842 -4.21509 1.26609 3.20487 3.27372 3.27634 3.50973 3.71450 4.10032 4.16112 4.31091 4.48033 4.71036 4.83784 4.90936 5.02002 5.09164 5.17494 5.17917 5.37094 5.52336 5.54294 5.55751 5.60979 5.67282 5.73592 5.75304 5.85274 5.96807 6.03002 6.15914 6.18098 6.19924 6.30768 6.36343 6.64681 6.86444 6.86630 7.09866 7.22513 7.51447 7.55229 7.59921 7.75948 8.02552 8.23105 8.81021 9.44513 10.92123 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.004917 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.673597 B = 5692.916374 C = 6667.452135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.106 3.894 14 S 2.783 3.217 15 O -0.998 6.998 16 O -0.983 6.983 17 N -1.130 6.130 18 C 0.128 3.872 19 C -0.088 4.088 20 H 0.085 0.915 21 C 0.076 3.924 22 O -0.576 6.576 23 C -0.079 4.079 24 C -0.153 4.153 25 C -0.181 4.181 26 C -0.183 4.183 27 H 0.012 0.988 28 H 0.032 0.968 29 H 0.092 0.908 30 H 0.264 0.736 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.411 0.589 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.379 0.621 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.434 -7.433 -6.726 15.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.565 4.565 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.041 4.041 14 S 2.792 3.208 15 O -0.982 6.982 16 O -0.967 6.967 17 N -0.890 5.890 18 C 0.001 3.999 19 C -0.108 4.108 20 H 0.103 0.897 21 C -0.002 4.002 22 O -0.381 6.381 23 C -0.117 4.117 24 C -0.171 4.171 25 C -0.218 4.218 26 C -0.220 4.220 27 H 0.031 0.969 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.244 0.756 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.225 0.775 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.887 -7.222 -8.025 15.332 hybrid contribution 0.596 -0.161 2.023 2.115 sum 11.483 -7.383 -6.002 14.913 Atomic orbital electron populations 1.22053 0.97994 0.99644 1.00739 1.18712 0.91869 0.92729 0.80160 0.92390 1.21323 1.31922 1.13074 0.90161 0.92016 1.24925 0.94992 0.94973 0.98941 1.69872 1.36077 1.22556 1.23907 0.86602 0.79010 0.79711 0.82246 1.20410 1.21251 1.20282 1.57696 1.64461 1.21341 1.39762 1.21207 0.99018 0.82082 1.01784 1.01777 0.72610 0.73101 0.73358 1.93537 1.86049 1.76357 1.42236 1.93592 1.83665 1.32547 1.86882 1.56092 1.32404 1.14934 1.85524 1.21249 0.92517 0.83619 1.02521 1.21322 0.94404 0.97604 0.97433 0.89697 1.22265 0.81137 0.99697 0.97108 1.86414 1.23108 1.87117 1.41473 1.21147 1.01462 0.94878 0.94231 1.22395 1.04730 0.91254 0.98760 1.23090 0.93426 1.01778 1.03512 1.22952 0.95894 1.01086 1.02098 0.96897 0.94887 0.88944 0.92573 0.93887 0.93237 0.90228 0.75554 0.91364 0.89900 0.92901 0.93028 0.77455 0.90389 0.91557 0.87701 0.88655 0.88786 0.89118 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.27 6.41 2.62 -69.09 -0.18 6.23 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.53 -13.01 7.99 -34.44 -0.28 -13.29 16 5 H 0.06 1.47 7.33 -52.49 -0.38 1.08 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -23.88 11.32 55.43 0.63 -23.25 16 8 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.99 -19.97 3.12 -115.85 -0.36 -20.33 16 13 C 0.11 1.83 9.28 59.85 0.56 2.38 16 14 S 2.78 53.63 6.10 -107.50 -0.66 52.97 16 15 O -1.00 -20.17 16.68 -57.17 -0.95 -21.12 16 16 O -0.98 -22.24 16.70 -57.17 -0.95 -23.20 16 17 N -1.13 -17.38 5.91 -10.61 -0.06 -17.44 16 18 C 0.13 1.69 5.53 -4.04 -0.02 1.67 16 19 C -0.09 -1.01 2.16 -90.62 -0.20 -1.21 16 20 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 21 C 0.08 0.88 6.35 37.16 0.24 1.11 16 22 O -0.58 -6.30 13.12 -35.23 -0.46 -6.77 16 23 C -0.08 -0.82 4.92 -26.73 -0.13 -0.95 16 24 C -0.15 -1.54 4.64 -90.62 -0.42 -1.96 16 25 C -0.18 -1.74 10.18 -26.69 -0.27 -2.01 16 26 C -0.18 -1.64 10.25 -26.69 -0.27 -1.91 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 29 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 30 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.73 7.79 -51.93 -0.40 0.33 16 33 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 34 H 0.41 5.76 7.38 -34.47 -0.25 5.51 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.09 6.83 -51.93 -0.35 0.74 16 37 H 0.05 0.63 6.78 -51.93 -0.35 0.28 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.38 2.68 9.12 45.56 0.42 3.09 16 40 H 0.08 0.84 7.70 -51.93 -0.40 0.44 16 41 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 42 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 43 H 0.10 0.88 8.03 -51.93 -0.42 0.47 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -31.18 380.05 -9.79 -40.97 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.93 Total: 9.12 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -0.74 Total: -11.47 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.20 Total: -61.03 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -2.37 Total: -51.09 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 53.63 SS G_CDS: -0.66 Total: 52.97 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.18 -9.79 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594866950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.922 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds