Wall clock time and date at job start Fri Apr 10 2020 18:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46752 * 2 1 4 4 C 1.50693 * 109.47032 * 120.00131 * 2 1 3 5 5 H 1.08001 * 120.00128 * 120.00635 * 4 2 1 6 6 C 1.37884 * 120.00245 * 299.99810 * 4 2 1 7 7 N 1.31518 * 119.99582 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99934 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47283 * 60.00389 * 8 6 4 10 10 H 1.48503 * 109.47078 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47573 * 299.99945 * 8 6 4 12 12 N 1.46498 * 109.47213 * 240.00667 * 2 1 3 13 13 C 1.46509 * 119.99735 * 299.99591 * 12 2 1 14 14 S 1.65599 * 120.00433 * 119.99874 * 12 2 1 15 15 O 1.42102 * 106.40136 * 203.53743 * 14 12 2 16 16 O 1.42099 * 106.39861 * 336.45906 * 14 12 2 17 17 N 1.65601 * 107.21562 * 89.99707 * 14 12 2 18 18 C 1.46501 * 120.00099 * 65.00583 * 17 14 12 19 19 C 1.52995 * 109.46946 * 164.99820 * 18 17 14 20 20 H 1.09002 * 109.47614 * 304.99350 * 19 18 17 21 21 C 1.53003 * 109.47533 * 64.99845 * 19 18 17 22 22 O 1.42897 * 109.47422 * 185.24991 * 21 19 18 23 23 C 1.53005 * 109.47054 * 184.99813 * 19 18 17 24 24 C 1.52993 * 109.47293 * 64.95784 * 23 19 18 25 25 C 1.53004 * 117.50188 * 243.72635 * 24 23 19 26 26 C 1.52998 * 117.49975 * 175.06359 * 24 23 19 27 27 H 1.09004 * 109.46832 * 59.99877 * 1 2 3 28 28 H 1.08997 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47130 * 299.99975 * 1 2 3 30 30 H 0.96995 * 119.99616 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.46819 * 90.00209 * 13 12 2 32 32 H 1.08998 * 109.47032 * 210.00343 * 13 12 2 33 33 H 1.09001 * 109.46982 * 330.00158 * 13 12 2 34 34 H 0.97004 * 119.99718 * 244.99585 * 17 14 12 35 35 H 1.09004 * 109.46654 * 284.99320 * 18 17 14 36 36 H 1.08995 * 109.47197 * 44.99251 * 18 17 14 37 37 H 1.09000 * 109.46469 * 305.25201 * 21 19 18 38 38 H 1.09000 * 109.47347 * 65.24927 * 21 19 18 39 39 H 0.96693 * 114.00168 * 179.97438 * 22 21 19 40 40 H 1.09001 * 109.47227 * 184.96463 * 23 19 18 41 41 H 1.09007 * 109.47085 * 304.96000 * 23 19 18 42 42 H 1.09001 * 115.54624 * 29.39333 * 24 23 19 43 43 H 1.08993 * 117.49588 * 359.97438 * 25 24 23 44 44 H 1.09004 * 117.49872 * 145.02029 * 25 24 23 45 45 H 1.09001 * 117.49686 * 214.97764 * 26 24 23 46 46 H 1.08998 * 117.49893 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1196 4.0078 9 1 3.8075 -1.1190 4.0076 10 1 1.8269 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0081 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1144 -2.2863 15 8 2.8228 -0.5644 -3.5259 16 8 2.6903 1.4974 -2.1192 17 7 4.5437 -0.1040 -1.8180 18 6 5.1358 -1.4439 -1.8416 19 6 6.6577 -1.3308 -1.7335 20 1 7.0305 -0.6771 -2.5221 21 6 7.0303 -0.7477 -0.3690 22 8 8.4413 -0.5280 -0.3139 23 6 7.2841 -2.7187 -1.8832 24 6 7.0159 -3.2500 -3.2926 25 6 6.1554 -4.5086 -3.4214 26 6 7.6623 -4.5814 -3.6807 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7082 1.1608 3.4844 31 1 0.7376 -2.1443 -1.9995 32 1 2.4630 -2.5817 -1.9865 33 1 1.5296 -2.5968 -0.4709 34 1 5.0734 0.6552 -1.5282 35 1 4.7541 -2.0246 -1.0018 36 1 4.8737 -1.9405 -2.7758 37 1 6.5093 0.1987 -0.2239 38 1 6.7405 -1.4461 0.4161 39 1 8.7493 -0.1581 0.5247 40 1 8.3596 -2.6517 -1.7187 41 1 6.8460 -3.3961 -1.1501 42 1 6.9187 -2.4922 -4.0701 43 1 5.7807 -4.9582 -2.5019 44 1 5.4924 -4.5789 -4.2838 45 1 7.9899 -4.6996 -4.7135 46 1 8.2790 -5.0786 -2.9319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594866950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:00 Heat of formation + Delta-G solvation = -139.105338 kcal Electronic energy + Delta-G solvation = -26913.397461 eV Core-core repulsion = 23157.319149 eV Total energy + Delta-G solvation = -3756.078313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.60812 -38.31045 -37.86579 -37.66298 -36.89019 -36.34639 -34.48238 -32.95173 -30.90710 -27.61692 -27.23502 -26.99190 -26.29213 -23.12944 -22.61065 -21.82273 -21.18144 -20.31086 -18.88306 -18.52745 -18.23582 -18.07932 -17.28318 -16.70990 -16.52637 -16.17556 -15.96539 -15.30899 -15.09802 -14.83907 -14.66377 -14.48898 -14.06446 -13.99634 -13.68986 -13.57244 -13.41863 -13.19603 -13.11608 -12.96298 -12.72579 -12.66554 -12.56311 -12.42267 -12.34584 -12.20555 -12.13778 -12.09103 -11.89447 -11.68938 -11.17968 -11.04728 -10.84315 -10.61506 -10.47012 -10.40207 -9.64640 -8.06328 -6.21113 -0.27342 1.47756 1.49213 1.56113 2.03069 2.47567 2.63905 2.98265 3.22231 3.25659 3.46838 3.65678 3.86513 4.07236 4.10450 4.14123 4.20250 4.30273 4.49318 4.61803 4.63467 4.66275 4.73407 4.78904 4.81682 4.82695 4.87176 4.98630 5.01476 5.08640 5.14036 5.17542 5.26681 5.29174 5.30138 5.35366 5.48931 5.63096 5.69312 5.86591 6.06105 6.17594 6.31538 6.88028 6.88351 7.48421 8.98125 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.004917 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.673597 B = 5692.916374 C = 6667.452135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.526 4.526 5 H 0.072 0.928 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.269 1.269 10 H -0.293 1.293 11 H -0.270 1.270 12 N -0.995 5.995 13 C 0.099 3.901 14 S 2.798 3.202 15 O -1.006 7.006 16 O -1.020 7.020 17 N -1.120 6.120 18 C 0.124 3.876 19 C -0.082 4.082 20 H 0.082 0.918 21 C 0.076 3.924 22 O -0.585 6.585 23 C -0.071 4.071 24 C -0.164 4.164 25 C -0.185 4.185 26 C -0.175 4.175 27 H 0.017 0.983 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.262 0.738 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.418 0.582 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.395 0.605 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.832 -9.365 -6.635 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.565 4.565 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.219 1.219 11 H -0.195 1.195 12 N -0.837 5.837 13 C -0.047 4.047 14 S 2.807 3.193 15 O -0.989 6.989 16 O -1.005 7.005 17 N -0.883 5.883 18 C -0.002 4.002 19 C -0.102 4.102 20 H 0.100 0.900 21 C -0.002 4.002 22 O -0.393 6.393 23 C -0.109 4.109 24 C -0.183 4.183 25 C -0.222 4.222 26 C -0.212 4.212 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.253 0.747 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.245 0.755 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.296 -9.170 -7.945 17.274 hybrid contribution 0.212 0.435 1.935 1.994 sum 12.508 -8.735 -6.010 16.397 Atomic orbital electron populations 1.21948 0.98081 1.00030 0.99831 1.18391 0.91825 0.91440 0.81477 0.95784 1.21584 1.31475 1.13066 0.90410 0.90955 1.25686 0.95248 0.95582 1.01823 1.70020 1.37458 1.24078 1.24283 0.85620 0.78811 0.78673 0.78522 1.19429 1.21867 1.19508 1.57573 1.65167 1.22446 1.38507 1.21419 1.00479 0.80519 1.02286 1.01148 0.73138 0.71959 0.73057 1.93522 1.86564 1.76274 1.42589 1.93538 1.84659 1.34979 1.87303 1.55780 1.30938 1.16361 1.85232 1.21438 0.93643 0.82214 1.02877 1.21263 0.93045 0.98472 0.97462 0.89992 1.22207 0.81544 0.99365 0.97040 1.86376 1.22569 1.87321 1.42997 1.21063 1.01169 0.94051 0.94601 1.22381 1.05856 0.91598 0.98430 1.23149 0.93932 1.01410 1.03746 1.23021 0.95543 0.99887 1.02762 0.96437 0.93730 0.91232 0.92850 0.93207 0.90567 0.90309 0.74677 0.90969 0.89558 0.93608 0.92877 0.75540 0.90531 0.91077 0.88292 0.88266 0.88822 0.88395 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.60 8.97 71.98 0.65 -5.96 16 2 C 0.27 13.08 2.62 44.24 0.12 13.19 16 3 H 0.02 1.33 6.91 -2.39 -0.02 1.31 16 4 C -0.53 -25.66 7.99 25.60 0.20 -25.45 16 5 H 0.07 3.31 7.33 -2.91 -0.02 3.29 16 6 C 0.02 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -50.12 11.32 21.45 0.24 -49.88 16 8 Si 0.96 39.91 29.54 68.60 2.03 41.94 16 9 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 12 N -1.00 -39.35 3.12 -520.43 -1.62 -40.97 16 13 C 0.10 3.22 9.28 127.77 1.19 4.40 16 14 S 2.80 106.41 6.10 -56.49 -0.34 106.07 16 15 O -1.01 -39.42 16.68 -128.00 -2.14 -41.56 16 16 O -1.02 -46.85 16.70 -128.00 -2.14 -48.99 16 17 N -1.12 -33.38 5.91 -187.50 -1.11 -34.49 16 18 C 0.12 3.06 5.53 86.38 0.48 3.54 16 19 C -0.08 -1.76 2.16 -10.79 -0.02 -1.78 16 20 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 21 C 0.08 1.64 6.35 71.98 0.46 2.10 16 22 O -0.58 -11.71 13.12 -148.98 -1.96 -13.66 16 23 C -0.07 -1.32 4.92 30.59 0.15 -1.17 16 24 C -0.16 -3.00 4.64 -10.79 -0.05 -3.05 16 25 C -0.19 -3.17 10.18 30.62 0.31 -2.86 16 26 C -0.18 -2.74 10.25 30.62 0.31 -2.43 16 27 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.04 1.94 7.67 -2.39 -0.02 1.93 16 29 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 30 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 2.06 7.79 -2.39 -0.02 2.04 16 33 H 0.08 2.59 7.02 -2.39 -0.02 2.57 16 34 H 0.42 11.46 7.38 -96.74 -0.71 10.75 16 35 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.09 2.10 6.83 -2.39 -0.02 2.08 16 37 H 0.05 1.03 6.78 -2.39 -0.02 1.02 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.40 4.83 9.12 -74.06 -0.68 4.15 16 40 H 0.08 1.48 7.70 -2.39 -0.02 1.46 16 41 H 0.07 1.26 7.88 -2.38 -0.02 1.24 16 42 H 0.10 1.92 8.08 -2.39 -0.02 1.90 16 43 H 0.10 1.61 8.03 -2.39 -0.02 1.59 16 44 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 46 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -65.26 380.05 -3.20 -68.47 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.41 Total: 31.27 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 4.24 Total: -18.20 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -2.49 Total: -125.34 kcal Atomic # 8 Polarization: -97.99 SS G_CDS: -6.23 Total: -104.22 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Atomic # 16 Polarization: 106.41 SS G_CDS: -0.34 Total: 106.07 kcal Total: -65.26 -3.20 -68.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594866950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.636 kcal (2) G-P(sol) polarization free energy of solvation -65.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds