Wall clock time and date at job start Fri Apr 10 2020 18:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47066 * 2 1 4 4 N 1.40073 * 126.10163 * 275.06757 * 3 2 1 5 5 C 1.30848 * 108.42343 * 180.02562 * 4 3 2 6 6 C 1.39698 * 108.45790 * 359.74186 * 5 4 3 7 7 C 1.50693 * 126.07226 * 180.27400 * 6 5 4 8 8 C 1.35855 * 126.09376 * 95.08852 * 3 2 1 9 9 N 1.39201 * 126.27214 * 359.97438 * 8 3 2 10 10 C 1.34776 * 119.99754 * 132.13048 * 9 8 3 11 11 O 1.21394 * 120.00371 * 6.68016 * 10 9 8 12 12 C 1.49306 * 119.99788 * 186.67467 * 10 9 8 13 13 O 1.21373 * 120.00111 * 5.10185 * 12 10 9 14 14 N 1.34772 * 120.00309 * 185.09782 * 12 10 9 15 15 C 1.46505 * 120.00593 * 184.91373 * 14 12 10 16 16 C 1.52998 * 109.47431 * 184.67495 * 15 14 12 17 17 C 1.50694 * 115.54975 * 295.02611 * 16 15 14 18 18 H 1.08001 * 120.00408 * 95.42489 * 17 16 15 19 19 C 1.37879 * 119.99966 * 275.14305 * 17 16 15 20 20 N 1.31518 * 119.99823 * 355.59981 * 19 17 16 21 21 Si 1.86804 * 120.00224 * 175.59862 * 19 17 16 22 22 H 1.48497 * 109.46873 * 59.99784 * 21 19 17 23 23 H 1.48496 * 109.47194 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46957 * 300.00110 * 21 19 17 25 25 C 1.53004 * 117.49702 * 80.69292 * 16 15 14 26 26 C 1.52996 * 117.49759 * 149.34992 * 16 15 14 27 27 H 1.08997 * 109.47740 * 59.99660 * 1 2 3 28 28 H 1.09003 * 109.47646 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47456 * 299.99515 * 1 2 3 30 30 H 1.08998 * 109.46817 * 240.00759 * 2 1 3 31 31 H 1.09000 * 109.47089 * 120.00700 * 2 1 3 32 32 H 1.07999 * 125.77062 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47228 * 277.78890 * 7 6 5 34 34 H 1.09006 * 109.47658 * 37.78349 * 7 6 5 35 35 H 1.08998 * 109.47418 * 157.78738 * 7 6 5 36 36 H 0.96999 * 119.99648 * 312.12647 * 9 8 3 37 37 H 0.97008 * 119.99872 * 4.91365 * 14 12 10 38 38 H 1.09003 * 109.46301 * 64.67419 * 15 14 12 39 39 H 1.09006 * 109.46668 * 304.68058 * 15 14 12 40 40 H 0.96994 * 119.99515 * 185.00292 * 20 19 17 41 41 H 1.08995 * 117.49859 * 215.00122 * 25 16 15 42 42 H 1.09000 * 117.49576 * 0.02562 * 25 16 15 43 43 H 1.08996 * 117.50022 * 359.97438 * 26 16 15 44 44 H 1.09000 * 117.49492 * 144.97208 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1991 2.1927 -1.1273 5 6 2.6483 3.3562 -0.7316 6 6 2.7657 3.3349 0.6603 7 6 3.2414 4.4713 1.5281 8 6 2.3769 2.1033 1.0935 9 7 2.3468 1.6667 2.4149 10 6 3.4138 1.8641 3.2142 11 8 4.3517 2.5274 2.8219 12 6 3.4421 1.2671 4.5824 13 8 2.5482 0.5285 4.9409 14 7 4.4604 1.5480 5.4194 15 6 4.5454 0.8795 6.7202 16 6 5.7176 1.4580 7.5154 17 6 7.0845 1.2094 6.9317 18 1 7.5485 1.9571 6.3055 19 6 7.7453 0.0298 7.2018 20 7 7.2220 -0.8407 8.0373 21 14 9.3840 -0.3319 6.3811 22 1 10.3646 0.7210 6.7484 23 1 9.8836 -1.6546 6.8350 24 1 9.2059 -0.3499 4.9069 25 6 5.4910 2.7842 8.2439 26 6 5.5939 1.4810 9.0401 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8932 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.8844 4.1929 -1.3723 33 1 4.3312 4.4892 1.5382 34 1 2.8663 5.4142 1.1301 35 1 2.8709 4.3326 2.5438 36 1 1.5578 1.2205 2.7603 37 1 5.1372 2.1930 5.1604 38 1 4.7002 -0.1889 6.5701 39 1 3.6186 1.0385 7.2716 40 1 7.7194 -1.6361 8.2834 41 1 6.3306 3.4768 8.3011 42 1 4.5067 3.2443 8.1570 43 1 4.6774 1.0844 9.4768 44 1 6.5013 1.3158 9.6211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595025092.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:14 Heat of formation + Delta-G solvation = 35.004647 kcal Electronic energy + Delta-G solvation = -26969.985237 eV Core-core repulsion = 23118.305699 eV Total energy + Delta-G solvation = -3851.679538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75233 -40.21392 -38.35522 -36.82081 -35.31866 -34.79548 -33.43867 -32.02533 -31.38648 -29.81145 -27.33784 -26.35758 -25.50232 -23.98095 -23.77900 -21.30384 -21.13350 -20.50662 -19.72377 -19.54039 -18.38682 -17.53826 -16.41474 -16.20610 -16.14244 -15.42011 -15.13706 -14.84124 -14.74956 -14.48921 -14.12155 -13.91385 -13.76482 -13.31081 -13.22429 -12.97879 -12.79029 -12.46136 -12.22219 -12.08364 -11.98611 -11.69644 -11.62283 -11.46160 -11.04161 -10.99289 -10.98692 -10.58613 -10.37616 -10.30265 -9.72859 -9.45908 -9.16516 -9.15362 -8.61862 -8.49316 -8.27619 -8.21060 -6.13893 -4.24034 1.28573 1.67150 2.02050 2.63111 2.70211 3.25329 3.30630 3.33875 3.37011 3.77620 4.24891 4.31573 4.64955 4.69557 4.77137 4.90579 5.13404 5.13674 5.18117 5.26949 5.28834 5.43828 5.62868 5.70842 5.73685 5.87910 5.88501 6.11284 6.21265 6.21602 6.32223 6.39289 6.56812 6.57786 6.67466 6.74665 6.80325 6.95216 7.02906 7.25106 7.43215 7.55046 7.63512 7.76159 7.93646 8.25135 8.33118 8.78231 9.44213 10.93046 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.003131 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.457250 B = 8941.895033 C = 9101.027025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.124 3.876 3 N -0.378 5.378 4 N -0.282 5.282 5 C 0.057 3.943 6 C -0.214 4.214 7 C -0.061 4.061 8 C 0.294 3.706 9 N -0.637 5.637 10 C 0.513 3.487 11 O -0.479 6.479 12 C 0.501 3.499 13 O -0.537 6.537 14 N -0.660 5.660 15 C 0.159 3.841 16 C 0.021 3.979 17 C -0.503 4.503 18 H 0.062 0.938 19 C 0.075 3.925 20 N -0.875 5.875 21 Si 0.891 3.109 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.209 4.209 26 C -0.139 4.139 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.186 0.814 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.422 0.578 37 H 0.415 0.585 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.263 0.737 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.077 4.939 -12.628 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.003 3.997 3 N -0.166 5.166 4 N -0.104 5.104 5 C -0.129 4.129 6 C -0.227 4.227 7 C -0.119 4.119 8 C 0.076 3.924 9 N -0.290 5.290 10 C 0.295 3.705 11 O -0.348 6.348 12 C 0.279 3.721 13 O -0.416 6.416 14 N -0.310 5.310 15 C 0.036 3.964 16 C 0.020 3.980 17 C -0.540 4.540 18 H 0.080 0.920 19 C -0.130 4.130 20 N -0.511 5.511 21 Si 0.718 3.282 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.247 4.247 26 C -0.177 4.177 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.203 0.797 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.260 0.740 37 H 0.252 0.748 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.331 3.767 -13.524 18.686 hybrid contribution 1.079 0.016 0.351 1.134 sum -11.253 3.783 -13.173 17.733 Atomic orbital electron populations 1.22189 0.94078 1.03253 1.03212 1.21705 0.95397 0.77854 1.04718 1.48978 1.52947 1.11873 1.02804 1.77373 1.23338 1.03324 1.06324 1.23574 0.99089 0.96118 0.94132 1.19791 1.13425 0.94873 0.94629 1.20053 1.01455 0.93395 0.97016 1.17570 1.03550 0.90733 0.80505 1.42355 1.18880 1.60708 1.07036 1.20729 0.82017 0.80783 0.86987 1.90832 1.34410 1.34898 1.74666 1.19559 0.84131 0.83350 0.85021 1.90742 1.36895 1.37790 1.76169 1.45905 1.25066 1.42431 1.17566 1.21275 0.97347 0.97262 0.80467 1.19010 0.93713 0.94240 0.91020 1.20347 0.99910 1.02059 1.31732 0.92011 1.24981 0.97540 0.95727 0.94725 1.69972 1.37358 1.11340 1.32452 0.86681 0.83799 0.77561 0.80164 1.20136 1.21245 1.20060 1.23040 0.99849 0.92050 1.09724 1.22479 1.00731 0.98622 0.95877 0.91423 0.90310 0.92098 0.88465 0.88932 0.79701 0.90838 0.92460 0.92878 0.73986 0.74827 0.90621 0.93178 0.92747 0.90159 0.91598 0.91702 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 37.16 0.38 -0.83 16 2 C 0.12 1.11 7.13 -4.04 -0.03 1.09 16 3 N -0.38 -4.61 3.64 -60.29 -0.22 -4.83 16 4 N -0.28 -3.64 12.56 30.59 0.38 -3.25 16 5 C 0.06 0.66 11.94 -17.43 -0.21 0.46 16 6 C -0.21 -2.78 5.72 -104.81 -0.60 -3.38 16 7 C -0.06 -0.74 8.49 36.00 0.31 -0.44 16 8 C 0.29 3.89 7.09 -152.85 -1.08 2.81 16 9 N -0.64 -8.16 5.14 -11.80 -0.06 -8.22 16 10 C 0.51 7.90 7.07 -11.65 -0.08 7.82 16 11 O -0.48 -8.15 13.14 5.46 0.07 -8.08 16 12 C 0.50 8.67 7.88 -11.65 -0.09 8.58 16 13 O -0.54 -10.02 16.49 5.48 0.09 -9.93 16 14 N -0.66 -12.33 5.46 -60.77 -0.33 -12.67 16 15 C 0.16 3.34 5.52 -4.04 -0.02 3.32 16 16 C 0.02 0.47 1.47 -155.66 -0.23 0.24 16 17 C -0.50 -12.65 8.59 -34.44 -0.30 -12.94 16 18 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 19 C 0.07 1.93 5.43 -17.82 -0.10 1.84 16 20 N -0.88 -23.50 12.66 55.43 0.70 -22.80 16 21 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.21 -4.18 9.96 -26.69 -0.27 -4.45 16 26 C -0.14 -3.03 9.16 -26.70 -0.24 -3.28 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.78 8.01 -51.93 -0.42 0.37 16 32 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.07 0.97 7.51 -51.93 -0.39 0.58 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.68 7.00 -51.93 -0.36 0.32 16 36 H 0.42 4.62 8.33 -40.82 -0.34 4.28 16 37 H 0.42 7.66 7.83 -40.82 -0.32 7.34 16 38 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.05 1.01 8.06 -51.93 -0.42 0.59 16 40 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -29.46 378.01 -7.70 -37.15 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -6.44 Total: 10.71 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -2.56 Total: 0.83 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.47 Total: -51.77 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.16 Total: -18.01 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.46 -7.70 -37.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595025092.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.159 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds