Wall clock time and date at job start Fri Apr 10 2020 18:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47189 * 2 1 4 4 C 1.36217 * 125.86332 * 84.97654 * 3 2 1 5 5 C 1.35305 * 108.88288 * 180.02562 * 4 3 2 6 6 C 1.40849 * 108.22467 * 0.02562 * 5 4 3 7 7 N 1.33384 * 126.34974 * 179.97438 * 6 5 4 8 8 C 1.33164 * 120.00541 * 0.02562 * 7 6 5 9 9 O 1.21754 * 119.99603 * 0.02562 * 8 7 6 10 10 C 1.49232 * 120.00572 * 180.02562 * 8 7 6 11 11 O 1.21383 * 119.99864 * 354.13239 * 10 8 7 12 12 N 1.34771 * 120.00416 * 174.12626 * 10 8 7 13 13 C 1.46928 * 120.63152 * 351.37616 * 12 10 8 14 14 C 1.53191 * 108.77576 * 233.62940 * 13 12 10 15 15 C 1.53038 * 109.31159 * 305.36173 * 14 13 12 16 16 C 1.53042 * 109.53863 * 61.36918 * 15 14 13 17 17 H 1.08994 * 109.49654 * 58.58328 * 16 15 14 18 18 C 1.50702 * 109.49780 * 178.65106 * 16 15 14 19 19 H 1.08003 * 119.99867 * 5.46748 * 18 16 15 20 20 C 1.37869 * 119.99886 * 185.46667 * 18 16 15 21 21 N 1.31513 * 119.99958 * 8.09286 * 20 18 16 22 22 Si 1.86805 * 119.99902 * 188.08858 * 20 18 16 23 23 H 1.48503 * 109.46960 * 94.98951 * 22 20 18 24 24 H 1.48502 * 109.47068 * 214.98963 * 22 20 18 25 25 H 1.48490 * 109.47160 * 334.99006 * 22 20 18 26 26 C 1.47001 * 120.61880 * 171.39839 * 12 10 8 27 27 N 1.37278 * 107.29584 * 0.22290 * 6 5 4 28 28 H 0.96998 * 126.33987 * 179.73381 * 27 6 5 29 29 H 1.09005 * 109.46803 * 59.99684 * 1 2 3 30 30 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46822 * 299.99982 * 1 2 3 32 32 H 1.09005 * 109.47326 * 239.99943 * 2 1 3 33 33 H 1.09001 * 109.47494 * 120.00092 * 2 1 3 34 34 H 1.08002 * 125.55698 * 0.05826 * 4 3 2 35 35 H 1.08005 * 125.88544 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.58688 * 113.83533 * 13 12 10 37 37 H 1.08999 * 109.58671 * 353.41632 * 13 12 10 38 38 H 1.09003 * 109.49507 * 185.41324 * 14 13 12 39 39 H 1.08996 * 109.49865 * 65.31802 * 14 13 12 40 40 H 1.09000 * 109.46360 * 301.34641 * 15 14 13 41 41 H 1.09003 * 109.44642 * 181.38476 * 15 14 13 42 42 H 0.97005 * 120.00112 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.62618 * 6.59403 * 26 12 10 44 44 H 1.09004 * 109.57658 * 246.15785 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1932 2.1658 1.0997 5 6 2.6567 3.3745 0.7060 6 6 2.7822 3.3626 -0.6968 7 7 3.2081 4.3694 -1.4611 8 6 3.5646 5.5246 -0.9028 9 8 3.5022 5.6616 0.3054 10 6 4.0405 6.6512 -1.7578 11 8 4.2044 6.4821 -2.9486 12 7 4.2883 7.8565 -1.2081 13 6 3.9187 8.1333 0.1868 14 6 3.0586 9.4004 0.2268 15 6 3.8076 10.5426 -0.4634 16 6 4.0613 10.1771 -1.9278 17 1 3.1103 9.9869 -2.4252 18 6 4.7695 11.3160 -2.6150 19 1 5.0932 12.1738 -2.0441 20 6 5.0043 11.2630 -3.9726 21 7 4.4742 10.2999 -4.6944 22 14 6.0753 12.5591 -4.7866 23 1 7.4700 12.0587 -4.8843 24 1 5.5560 12.8467 -6.1478 25 1 6.0512 13.8022 -3.9748 26 6 4.9331 8.9192 -1.9929 27 7 2.3796 2.1244 -1.1321 28 1 2.3519 1.8197 -2.0526 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9948 1.8710 2.1196 35 1 2.8901 4.2053 1.3555 36 1 4.8202 8.2846 0.7805 37 1 3.3512 7.2936 0.5880 38 1 2.8577 9.6711 1.2634 39 1 2.1170 9.2174 -0.2909 40 1 4.7602 10.7085 0.0397 41 1 3.2080 11.4515 -0.4146 42 1 4.6390 10.2628 -5.6496 43 1 5.0347 8.5983 -3.0296 44 1 5.9173 9.1345 -1.5769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595084422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:18 Heat of formation + Delta-G solvation = 29.569503 kcal Electronic energy + Delta-G solvation = -26918.639614 eV Core-core repulsion = 23066.724391 eV Total energy + Delta-G solvation = -3851.915223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.61967 -41.41016 -39.48524 -38.29095 -36.08971 -35.14753 -33.81844 -33.27863 -32.70333 -31.59757 -29.85868 -27.59998 -26.78891 -25.14214 -23.88300 -23.49221 -22.85329 -22.54162 -21.07091 -19.86026 -18.75061 -18.49985 -17.80056 -17.46703 -16.96297 -16.73352 -16.54332 -16.30332 -16.09765 -15.49678 -15.14228 -15.08292 -14.84885 -14.68765 -14.54055 -14.44203 -14.15120 -13.83987 -13.56643 -13.45890 -12.97901 -12.86483 -12.78039 -12.41874 -12.29118 -12.19289 -12.03493 -11.75523 -11.64295 -11.49964 -11.15289 -10.86779 -10.69776 -10.52750 -10.51587 -9.64972 -9.43284 -8.73387 -8.11704 -6.26111 -0.29322 0.27363 0.93653 1.40444 1.42725 1.53841 1.78196 1.89095 2.43347 2.59082 2.91245 3.17555 3.34354 3.69752 3.87444 4.04561 4.14926 4.22008 4.23583 4.38332 4.39108 4.43912 4.61629 4.62324 4.76469 4.84574 4.85005 4.87865 4.96859 5.07027 5.16304 5.23213 5.27734 5.29524 5.33032 5.55592 5.60974 5.73172 5.85261 5.87507 5.93335 6.22342 6.31127 6.41047 6.55561 6.87226 7.12420 7.42763 7.57733 8.95648 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027454 B = 0.002672 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.635301 B =10477.720729 C =11166.979264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.117 3.883 3 N -0.353 5.353 4 C 0.202 3.798 5 C -0.341 4.341 6 C 0.448 3.552 7 N -0.690 5.690 8 C 0.497 3.503 9 O -0.551 6.551 10 C 0.497 3.503 11 O -0.561 6.561 12 N -0.587 5.587 13 C 0.073 3.927 14 C -0.125 4.125 15 C -0.104 4.104 16 C 0.038 3.962 17 H -0.013 1.013 18 C -0.535 4.535 19 H 0.066 0.934 20 C 0.007 3.993 21 N -0.919 5.919 22 Si 0.962 3.038 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.258 1.258 26 C 0.128 3.872 27 N -0.463 5.463 28 H 0.457 0.543 29 H 0.043 0.957 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.152 0.848 34 H 0.259 0.741 35 H 0.175 0.825 36 H 0.071 0.929 37 H 0.141 0.859 38 H 0.104 0.896 39 H 0.041 0.959 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.260 0.740 43 H 0.058 0.942 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.316 -28.494 18.512 35.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.000 4.000 3 N -0.141 5.141 4 C 0.059 3.941 5 C -0.372 4.372 6 C 0.199 3.801 7 N -0.454 5.454 8 C 0.278 3.722 9 O -0.433 6.433 10 C 0.280 3.720 11 O -0.439 6.439 12 N -0.320 5.320 13 C -0.048 4.048 14 C -0.163 4.163 15 C -0.141 4.141 16 C 0.019 3.981 17 H 0.006 0.994 18 C -0.573 4.573 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.557 5.557 22 Si 0.786 3.214 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.182 1.182 26 C 0.005 3.995 27 N -0.187 5.187 28 H 0.307 0.693 29 H 0.062 0.938 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.169 0.831 34 H 0.274 0.726 35 H 0.192 0.808 36 H 0.089 0.911 37 H 0.157 0.843 38 H 0.122 0.878 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.316 -28.958 17.359 35.024 hybrid contribution 0.595 1.057 -1.375 1.833 sum -8.721 -27.901 15.984 33.317 Atomic orbital electron populations 1.22338 0.93676 1.04746 1.02888 1.22631 0.95525 0.73486 1.08356 1.47668 1.57824 1.12060 0.96588 1.23765 0.89005 0.87983 0.93389 1.22607 1.18202 1.02572 0.93835 1.19404 0.85195 0.84431 0.91087 1.68649 1.36519 1.01999 1.38268 1.20128 0.79002 0.87163 0.85894 1.90263 1.54075 1.82638 1.16337 1.20463 0.79344 0.84464 0.87708 1.90655 1.52784 1.83435 1.17048 1.48466 1.57588 1.11100 1.14858 1.22949 1.00655 1.01153 0.80018 1.21936 0.97811 0.94848 1.01699 1.21532 0.99731 0.97487 0.95382 1.18899 0.93886 0.92159 0.93193 0.99434 1.21481 1.38211 1.04355 0.93277 0.91563 1.25994 0.96917 0.98071 0.98289 1.70194 1.43975 1.34871 1.06643 0.85491 0.78785 0.79462 0.77632 1.20168 1.21178 1.18214 1.21789 0.95070 0.87391 0.95207 1.44590 1.61235 1.08562 1.04314 0.69254 0.93802 0.87896 0.90993 0.87192 0.83067 0.72561 0.80817 0.91071 0.84281 0.87810 0.94016 0.92097 0.92670 0.93124 0.92332 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.45 10.24 71.98 0.74 1.19 16 2 C 0.12 -0.46 7.16 86.38 0.62 0.15 16 3 N -0.35 -2.06 3.65 -347.02 -1.26 -3.33 16 4 C 0.20 1.32 11.46 83.33 0.96 2.27 16 5 C -0.34 -7.08 9.52 22.23 0.21 -6.87 16 6 C 0.45 12.47 8.07 133.77 1.08 13.55 16 7 N -0.69 -28.13 10.33 -310.95 -3.21 -31.35 16 8 C 0.50 22.39 7.63 87.45 0.67 23.06 16 9 O -0.55 -22.11 10.07 -4.52 -0.05 -22.16 16 10 C 0.50 26.62 7.73 87.20 0.67 27.29 16 11 O -0.56 -34.85 16.35 -3.35 -0.05 -34.91 16 12 N -0.59 -29.87 2.97 -820.55 -2.44 -32.31 16 13 C 0.07 2.95 5.99 86.36 0.52 3.47 16 14 C -0.12 -4.81 6.08 30.67 0.19 -4.62 16 15 C -0.10 -4.65 5.11 30.62 0.16 -4.49 16 16 C 0.04 2.16 2.11 -11.46 -0.02 2.13 16 17 H -0.01 -0.83 8.10 -2.39 -0.02 -0.85 16 18 C -0.53 -31.84 8.48 25.60 0.22 -31.63 16 19 H 0.07 3.74 7.76 -2.91 -0.02 3.72 16 20 C 0.01 0.40 5.26 84.65 0.45 0.85 16 21 N -0.92 -60.46 12.15 21.44 0.26 -60.20 16 22 Si 0.96 47.07 29.55 68.60 2.03 49.10 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 26 C 0.13 7.28 5.50 86.35 0.47 7.75 16 27 N -0.46 -7.35 7.37 -54.86 -0.40 -7.75 16 28 H 0.46 5.79 8.96 -213.28 -1.91 3.88 16 29 H 0.04 0.12 8.14 -2.38 -0.02 0.10 16 30 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.11 -0.59 8.14 -2.38 -0.02 -0.61 16 33 H 0.15 -1.61 8.14 -2.39 -0.02 -1.62 16 34 H 0.26 -1.53 8.06 -2.91 -0.02 -1.55 16 35 H 0.17 4.41 5.77 -2.91 -0.02 4.39 16 36 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.14 5.48 4.28 -51.32 -0.22 5.26 16 38 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.26 16.33 8.31 -92.70 -0.77 15.56 16 43 H 0.06 3.89 5.88 -2.39 -0.01 3.87 16 44 H 0.05 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -99.93 360.77 0.69 -99.24 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -1.09 Total: 9.57 kcal Atomic # 6 Polarization: 27.19 SS G_CDS: 6.92 Total: 34.10 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -7.06 Total: -134.94 kcal Atomic # 8 Polarization: -56.97 SS G_CDS: -0.10 Total: -57.07 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -99.93 0.69 -99.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595084422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.807 kcal (2) G-P(sol) polarization free energy of solvation -99.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds