Wall clock time and date at job start Fri Apr 10 2020 18:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47244 * 2 1 4 4 C 1.35224 * 125.99349 * 125.28690 * 3 2 1 5 5 C 1.35854 * 107.64197 * 180.15926 * 4 3 2 6 6 N 1.40486 * 126.11435 * 179.83951 * 5 4 3 7 7 C 1.34775 * 119.99720 * 179.72064 * 6 5 4 8 8 O 1.21396 * 120.00242 * 359.97438 * 7 6 5 9 9 C 1.49333 * 119.99583 * 180.02562 * 7 6 5 10 10 O 1.21362 * 120.00115 * 6.32919 * 9 7 6 11 11 N 1.34773 * 119.99551 * 186.33429 * 9 7 6 12 12 C 1.46921 * 120.63636 * 7.08442 * 11 9 7 13 13 C 1.53189 * 108.77981 * 233.63474 * 12 11 9 14 14 C 1.53041 * 109.33692 * 305.37939 * 13 12 11 15 15 C 1.53040 * 109.53978 * 61.31522 * 14 13 12 16 16 H 1.09000 * 109.50022 * 58.65388 * 15 14 13 17 17 C 1.50705 * 109.49769 * 178.71481 * 15 14 13 18 18 H 1.07999 * 119.99534 * 24.39587 * 17 15 14 19 19 C 1.37872 * 120.00210 * 204.66503 * 17 15 14 20 20 N 1.31514 * 120.00262 * 184.49025 * 19 17 15 21 21 Si 1.86810 * 119.99644 * 4.49348 * 19 17 15 22 22 H 1.48501 * 109.47112 * 95.26528 * 21 19 17 23 23 H 1.48500 * 109.46739 * 215.25731 * 21 19 17 24 24 H 1.48492 * 109.47206 * 335.26221 * 21 19 17 25 25 C 1.46934 * 120.62630 * 187.11172 * 11 9 7 26 26 C 1.40338 * 107.76990 * 359.57659 * 5 4 3 27 27 N 1.30827 * 108.20898 * 0.26593 * 26 5 4 28 28 H 1.09000 * 109.47171 * 59.99327 * 1 2 3 29 29 H 1.08996 * 109.47482 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46698 * 300.00011 * 1 2 3 31 31 H 1.09005 * 109.46698 * 239.99989 * 2 1 3 32 32 H 1.08993 * 109.46944 * 120.00027 * 2 1 3 33 33 H 1.07995 * 126.18231 * 359.97438 * 4 3 2 34 34 H 0.97000 * 119.99653 * 359.71547 * 6 5 4 35 35 H 1.09000 * 109.58333 * 353.41741 * 12 11 9 36 36 H 1.08998 * 109.58920 * 113.84650 * 12 11 9 37 37 H 1.09001 * 109.50271 * 65.30980 * 13 12 11 38 38 H 1.08998 * 109.50256 * 185.41290 * 13 12 11 39 39 H 1.08999 * 109.43013 * 301.31058 * 14 13 12 40 40 H 1.09002 * 109.48639 * 181.35098 * 14 13 12 41 41 H 0.96996 * 119.99929 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.58677 * 6.57719 * 25 11 9 43 43 H 1.09007 * 109.70078 * 246.22155 * 25 11 9 44 44 H 1.07996 * 125.89366 * 180.27914 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8792 1.9197 0.8931 5 6 3.0733 3.2188 0.5460 6 7 3.8957 4.1406 1.2150 7 6 4.0024 5.4040 0.7580 8 8 3.3884 5.7453 -0.2320 9 6 4.8771 6.3836 1.4688 10 8 5.5795 6.0151 2.3873 11 7 4.8861 7.6771 1.0904 12 6 3.9323 8.1706 0.0878 13 6 4.7106 8.8708 -1.0306 14 6 5.6028 9.9563 -0.4243 15 6 6.6074 9.3157 0.5363 16 1 7.2090 8.5831 -0.0018 17 6 7.5060 10.3815 1.1087 18 1 7.1676 11.4061 1.1537 19 6 8.7622 10.0495 1.5698 20 7 9.5121 10.9611 2.1496 21 14 9.3992 8.3046 1.3708 22 1 10.2219 8.2156 0.1378 23 1 10.2302 7.9439 2.5474 24 1 8.2518 7.3675 1.2690 25 6 5.8507 8.6205 1.6724 26 6 2.3101 3.4735 -0.6039 27 7 1.6803 2.3738 -0.9285 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.3286 1.4102 1.7325 34 1 4.3865 3.8677 2.0059 35 1 3.3716 7.3327 -0.3265 36 1 3.2459 8.8779 0.5534 37 1 5.3296 8.1423 -1.5543 38 1 4.0105 9.3250 -1.7318 39 1 4.9854 10.6712 0.1196 40 1 6.1398 10.4722 -1.2203 41 1 10.3960 10.7276 2.4736 42 1 6.5555 8.0795 2.3037 43 1 5.3227 9.3647 2.2688 44 1 2.2529 4.4149 -1.1301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595086749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:28 Heat of formation + Delta-G solvation = 6.965480 kcal Electronic energy + Delta-G solvation = -27041.993370 eV Core-core repulsion = 23189.097963 eV Total energy + Delta-G solvation = -3852.895407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.62184 -41.75448 -39.84065 -38.65318 -36.44161 -35.18576 -34.78076 -33.56930 -32.16763 -31.29667 -29.81197 -27.61770 -26.88551 -24.94119 -24.51195 -23.44847 -22.45559 -22.02014 -21.03762 -20.36016 -19.15897 -18.62730 -18.35635 -17.86034 -17.11426 -16.80715 -16.42590 -16.36237 -16.23917 -15.66508 -15.44530 -15.20168 -15.00601 -14.86508 -14.67066 -14.46706 -14.06491 -13.86997 -13.71626 -13.44994 -13.07040 -13.03025 -12.92706 -12.55701 -12.43869 -12.31340 -12.02000 -11.96985 -11.69884 -11.65390 -11.60620 -11.32711 -11.09603 -10.74171 -10.43870 -10.04567 -9.69683 -8.84469 -8.34209 -6.37376 0.10400 0.88081 1.10214 1.28052 1.34236 1.44765 1.61711 1.66642 2.22372 2.29792 2.48643 3.03626 3.20696 3.61703 3.90323 4.05367 4.11337 4.16385 4.17465 4.24215 4.38997 4.47128 4.49279 4.53596 4.56071 4.65263 4.73806 4.83704 4.85910 4.95789 4.96986 5.10708 5.20538 5.26451 5.29443 5.38798 5.56919 5.61073 5.64944 5.73091 5.95219 6.05116 6.26798 6.32100 6.57871 6.69032 6.74845 6.87809 7.29214 8.81832 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024980 B = 0.002921 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.639118 B = 9584.900906 C =10268.433478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.124 3.876 3 N -0.363 5.363 4 C 0.053 3.947 5 C -0.038 4.038 6 N -0.595 5.595 7 C 0.518 3.482 8 O -0.505 6.505 9 C 0.497 3.503 10 O -0.557 6.557 11 N -0.573 5.573 12 C 0.050 3.950 13 C -0.123 4.123 14 C -0.103 4.103 15 C 0.006 3.994 16 H 0.023 0.977 17 C -0.510 4.510 18 H 0.044 0.956 19 C 0.022 3.978 20 N -0.940 5.940 21 Si 0.929 3.071 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.253 1.253 25 C 0.117 3.883 26 C 0.039 3.961 27 N -0.313 5.313 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.222 0.778 34 H 0.430 0.570 35 H 0.160 0.840 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.267 0.733 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.515 -24.437 -3.514 30.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.005 3.995 3 N -0.147 5.147 4 C -0.097 4.097 5 C -0.142 4.142 6 N -0.241 5.241 7 C 0.301 3.699 8 O -0.383 6.383 9 C 0.279 3.721 10 O -0.437 6.437 11 N -0.304 5.304 12 C -0.070 4.070 13 C -0.160 4.160 14 C -0.140 4.140 15 C -0.014 4.014 16 H 0.041 0.959 17 C -0.549 4.549 18 H 0.062 0.938 19 C -0.176 4.176 20 N -0.579 5.579 21 Si 0.754 3.246 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.177 1.177 25 C -0.005 4.005 26 C -0.147 4.147 27 N -0.135 5.135 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.151 0.849 33 H 0.239 0.761 34 H 0.269 0.731 35 H 0.176 0.824 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -19.263 -25.025 -4.453 31.893 hybrid contribution 1.870 0.448 1.196 2.264 sum -17.394 -24.577 -3.257 30.285 Atomic orbital electron populations 1.22037 0.93712 1.04064 1.02206 1.22133 0.96142 0.75122 1.06110 1.48804 1.34627 1.11093 1.20211 1.22508 0.96681 0.92318 0.98157 1.17919 1.05028 0.91042 1.00204 1.42266 1.43971 1.07918 1.29961 1.19870 0.82167 0.83204 0.84673 1.90202 1.46212 1.75682 1.26225 1.20131 0.83879 0.83905 0.84142 1.90727 1.44159 1.78791 1.30026 1.48401 1.34124 1.07274 1.40570 1.23383 0.91177 1.03717 0.88694 1.21865 0.98929 0.97610 0.97645 1.21485 0.96782 0.97608 0.98169 1.19425 0.94189 0.94533 0.93236 0.95853 1.21178 0.99023 0.94747 1.39926 0.93774 1.25790 0.97314 1.00398 0.94097 1.70024 1.11316 1.35981 1.40600 0.86017 0.78989 0.81648 0.77922 1.19592 1.21246 1.17693 1.22238 0.90466 0.90307 0.97447 1.24477 0.95706 0.98425 0.96076 1.77337 1.24295 0.97169 1.14748 0.93264 0.88121 0.92770 0.88845 0.84886 0.76123 0.73067 0.82433 0.90636 0.92797 0.88279 0.92479 0.92664 0.92424 0.92307 0.91331 0.78718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 10.10 71.98 0.73 -0.50 16 2 C 0.12 0.85 7.23 86.38 0.62 1.47 16 3 N -0.36 -5.62 3.68 -347.40 -1.28 -6.90 16 4 C 0.05 0.73 11.49 83.62 0.96 1.69 16 5 C -0.04 -0.79 6.90 37.71 0.26 -0.53 16 6 N -0.60 -13.26 5.45 -305.41 -1.67 -14.92 16 7 C 0.52 14.63 7.74 87.23 0.68 15.31 16 8 O -0.51 -14.42 10.25 -3.39 -0.03 -14.45 16 9 C 0.50 17.37 7.74 87.23 0.68 18.05 16 10 O -0.56 -22.09 15.94 -3.28 -0.05 -22.14 16 11 N -0.57 -20.80 2.97 -820.63 -2.44 -23.24 16 12 C 0.05 1.48 6.27 86.36 0.54 2.03 16 13 C -0.12 -3.69 6.08 30.67 0.19 -3.50 16 14 C -0.10 -3.89 5.15 30.62 0.16 -3.73 16 15 C 0.01 0.27 1.78 -11.46 -0.02 0.25 16 16 H 0.02 1.12 5.77 -2.39 -0.01 1.11 16 17 C -0.51 -28.56 8.87 25.60 0.23 -28.34 16 18 H 0.04 2.69 8.05 -2.91 -0.02 2.67 16 19 C 0.02 1.31 5.47 84.65 0.46 1.77 16 20 N -0.94 -58.38 13.96 21.45 0.30 -58.09 16 21 Si 0.93 45.99 26.39 68.60 1.81 47.80 16 22 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.25 -12.32 5.73 99.48 0.57 -11.75 16 25 C 0.12 5.09 5.38 86.36 0.46 5.55 16 26 C 0.04 0.95 10.84 85.35 0.93 1.87 16 27 N -0.31 -7.18 12.40 -56.72 -0.70 -7.89 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.13 -0.03 8.07 -2.39 -0.02 -0.05 16 33 H 0.22 0.97 8.06 -2.91 -0.02 0.95 16 34 H 0.43 8.03 8.31 -92.71 -0.77 7.26 16 35 H 0.16 4.41 3.78 -79.14 -0.30 4.11 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 42 H 0.06 2.83 5.46 -2.39 -0.01 2.82 16 43 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 44 H 0.20 5.02 5.92 -2.91 -0.02 5.00 16 Total: -1.00 -74.75 355.16 2.64 -72.11 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -0.16 Total: 16.33 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 6.87 Total: 11.39 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -5.79 Total: -111.04 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.09 Total: -36.59 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.81 Total: 47.80 kcal Total: -74.75 2.64 -72.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.076 kcal (2) G-P(sol) polarization free energy of solvation -74.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds