Wall clock time and date at job start Fri Apr 10 2020 18:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46706 * 2 1 4 4 C 1.50697 * 109.47104 * 240.00155 * 2 1 3 5 5 H 1.08000 * 120.00215 * 239.99875 * 4 2 1 6 6 C 1.37880 * 120.00253 * 60.00044 * 4 2 1 7 7 N 1.31509 * 119.99669 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00037 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47279 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47024 * 120.00170 * 8 6 4 11 11 H 1.48502 * 109.46581 * 239.99619 * 8 6 4 12 12 N 1.46501 * 109.47215 * 120.00265 * 2 1 3 13 13 C 1.46495 * 120.00184 * 59.99835 * 12 2 1 14 14 C 1.34776 * 119.99708 * 240.00357 * 12 2 1 15 15 O 1.21281 * 119.99962 * 185.18557 * 14 12 2 16 16 C 1.50698 * 120.00300 * 5.18962 * 14 12 2 17 17 H 1.09002 * 110.85198 * 319.52051 * 16 14 12 18 18 C 1.54627 * 110.97230 * 83.31205 * 16 14 12 19 19 C 1.51274 * 104.19630 * 93.35916 * 18 16 14 20 20 O 1.21303 * 124.94704 * 196.27602 * 19 18 16 21 21 N 1.34423 * 110.11699 * 16.25173 * 19 18 16 22 22 C 1.40763 * 124.35450 * 180.40951 * 21 19 18 23 23 C 1.40247 * 126.08547 * 180.02562 * 22 21 19 24 24 N 1.30828 * 108.33748 * 180.02562 * 23 22 21 25 25 N 1.40065 * 108.36864 * 359.74586 * 24 23 22 26 26 C 1.46504 * 126.05437 * 180.26778 * 25 24 23 27 27 C 1.35758 * 126.07447 * 0.02562 * 22 21 19 28 28 C 1.46767 * 111.29815 * 0.67609 * 21 19 18 29 29 H 1.08995 * 109.47314 * 60.00039 * 1 2 3 30 30 H 1.09000 * 109.46706 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47452 * 299.99726 * 1 2 3 32 32 H 0.97002 * 119.99682 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47571 * 267.38212 * 13 12 2 34 34 H 1.09001 * 109.47414 * 27.37748 * 13 12 2 35 35 H 1.09003 * 109.47472 * 147.37937 * 13 12 2 36 36 H 1.09006 * 110.48340 * 334.67940 * 18 16 14 37 37 H 1.08998 * 110.48722 * 212.04146 * 18 16 14 38 38 H 1.08007 * 125.83222 * 0.02562 * 23 22 21 39 39 H 1.09001 * 109.47377 * 270.17723 * 26 25 24 40 40 H 1.08998 * 109.46997 * 30.18122 * 26 25 24 41 41 H 1.08999 * 109.47069 * 150.17653 * 26 25 24 42 42 H 1.07993 * 126.22360 * 359.97438 * 27 22 21 43 43 H 1.09000 * 110.24777 * 101.71956 * 28 21 19 44 44 H 1.09000 * 110.24250 * 223.71929 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1195 -4.0080 9 1 3.1485 -2.2856 -3.6038 10 1 1.1679 -1.5865 -4.8165 11 1 3.1473 -0.1855 -4.8160 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.2748 -0.6312 3.0237 16 6 3.0611 1.4368 1.9070 17 1 3.2298 1.6775 0.8573 18 6 1.9059 2.2832 2.4901 19 6 2.3478 2.5902 3.9039 20 8 1.6197 2.9887 4.7885 21 7 3.6648 2.3565 4.0376 22 6 4.3860 2.5357 5.2331 23 6 5.7575 2.3041 5.4131 24 7 6.0621 2.5806 6.6550 25 7 4.8992 3.0039 7.3110 26 6 4.8015 3.4147 8.7139 27 6 3.8776 2.9635 6.4170 28 6 4.2555 1.8966 2.7752 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7082 1.1608 -3.4844 33 1 0.7632 -2.1444 2.0387 34 1 1.4840 -2.5852 0.4722 35 1 2.4829 -2.5938 1.9454 36 1 0.9785 1.7103 2.4961 37 1 1.7825 3.2043 1.9205 38 1 6.4448 1.9567 4.6558 39 1 4.5794 2.5452 9.3325 40 1 5.7474 3.8539 9.0305 41 1 4.0049 4.1507 8.8223 42 1 2.8487 3.2277 6.6114 43 1 4.7873 2.7137 2.2878 44 1 4.9315 1.0612 2.9574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599329503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:34 Heat of formation + Delta-G solvation = 24.590392 kcal Electronic energy + Delta-G solvation = -27618.759657 eV Core-core repulsion = 23766.628523 eV Total energy + Delta-G solvation = -3852.131134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.49521 -40.35340 -38.73748 -36.24368 -35.57062 -33.62408 -32.73981 -32.27207 -29.32178 -29.18475 -27.81773 -26.75201 -26.26984 -25.38464 -22.91022 -21.99839 -21.49264 -20.60940 -19.30453 -18.26334 -17.59811 -17.08538 -16.63896 -15.96697 -15.71909 -15.23639 -15.12061 -14.92785 -14.57791 -14.47994 -14.31045 -13.58884 -13.35823 -13.20233 -13.10479 -12.89419 -12.68501 -12.61452 -12.43965 -11.96743 -11.75078 -11.67330 -11.42361 -11.34280 -11.07613 -10.98783 -10.94138 -10.76207 -10.35521 -10.25718 -10.17251 -9.70419 -9.46527 -9.42910 -9.10403 -8.61980 -7.73734 -7.57749 -6.26465 -4.35087 1.76169 2.29437 2.34154 3.05174 3.15767 3.17609 3.22121 3.25692 3.29486 3.76978 4.24824 4.31520 4.48138 4.63205 4.91123 4.96047 4.97049 5.02118 5.05493 5.10379 5.20485 5.49375 5.54131 5.58158 5.62476 5.72490 5.90302 5.98637 6.11665 6.15015 6.17560 6.42364 6.52292 6.67014 6.76295 6.83091 6.97312 7.11389 7.15219 7.29650 7.57876 7.60244 7.77134 8.02148 8.23891 8.33061 8.65900 8.87624 9.33813 10.78072 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024637 B = 0.003101 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.249935 B = 9027.801905 C = 9168.719798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.251 3.749 3 H 0.056 0.944 4 C -0.531 4.531 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.587 5.587 13 C 0.093 3.907 14 C 0.515 3.485 15 O -0.564 6.564 16 C -0.124 4.124 17 H 0.134 0.866 18 C -0.133 4.133 19 C 0.520 3.480 20 O -0.532 6.532 21 N -0.526 5.526 22 C 0.021 3.979 23 C 0.041 3.959 24 N -0.285 5.285 25 N -0.378 5.378 26 C 0.109 3.891 27 C 0.033 3.967 28 C 0.120 3.880 29 H 0.095 0.905 30 H 0.033 0.967 31 H 0.013 0.987 32 H 0.265 0.735 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.187 0.813 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.188 0.812 43 H 0.086 0.914 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.886 5.575 12.064 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.151 3.849 3 H 0.073 0.927 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.316 5.316 13 C -0.050 4.050 14 C 0.301 3.699 15 O -0.445 6.445 16 C -0.145 4.145 17 H 0.152 0.848 18 C -0.174 4.174 19 C 0.309 3.691 20 O -0.409 6.409 21 N -0.252 5.252 22 C -0.082 4.082 23 C -0.146 4.146 24 N -0.107 5.107 25 N -0.164 5.164 26 C -0.032 4.032 27 C -0.114 4.114 28 C -0.002 4.002 29 H 0.114 0.886 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.137 0.863 38 H 0.204 0.796 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.205 0.795 43 H 0.104 0.896 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.559 5.664 13.876 15.986 hybrid contribution -0.494 -0.609 -1.756 1.924 sum 5.065 5.055 12.120 14.075 Atomic orbital electron populations 1.22131 0.97859 1.00082 1.00921 1.19146 0.91643 0.93366 0.80769 0.92675 1.21372 1.32084 1.13493 0.90023 0.91858 1.24876 0.94673 0.94923 0.99032 1.69852 1.36007 1.22584 1.24014 0.86440 0.78715 0.79737 0.82580 1.19715 1.20878 1.20824 1.48216 1.48464 1.11897 1.23053 1.21422 0.99214 0.82718 1.01632 1.20026 0.79103 0.88362 0.82391 1.90639 1.52342 1.68935 1.32597 1.22390 0.95331 0.93824 1.02985 0.84782 1.22223 0.99748 1.02354 0.93064 1.20945 0.81079 0.76405 0.90643 1.90622 1.57165 1.46868 1.46292 1.45101 1.08498 1.63227 1.08357 1.17537 0.91697 1.11915 0.87043 1.23640 0.93963 1.02248 0.94794 1.77237 1.07076 1.19964 1.06383 1.48272 1.05409 1.52759 1.09985 1.21801 1.04146 1.00839 0.76434 1.22421 0.95207 1.04929 0.88828 1.22136 0.95878 1.00274 0.81949 0.88623 0.94789 0.96793 0.92526 0.94165 0.90303 0.92185 0.87226 0.86300 0.79647 0.90858 0.89361 0.89462 0.79540 0.89625 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.97 37.16 0.33 -2.84 16 2 C 0.25 5.33 2.52 -69.08 -0.17 5.15 16 3 H 0.06 1.17 5.35 -51.93 -0.28 0.89 16 4 C -0.53 -12.64 7.97 -34.44 -0.27 -12.92 16 5 H 0.06 1.55 7.38 -52.49 -0.39 1.16 16 6 C 0.07 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -22.02 11.32 55.43 0.63 -21.40 16 8 Si 0.90 19.28 29.54 -169.99 -5.02 14.26 16 9 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.59 -11.59 2.75 -175.26 -0.48 -12.07 16 13 C 0.09 1.72 9.42 59.84 0.56 2.28 16 14 C 0.51 9.77 6.82 -10.99 -0.07 9.69 16 15 O -0.56 -12.04 15.41 5.56 0.09 -11.95 16 16 C -0.12 -1.89 2.50 -90.05 -0.22 -2.11 16 17 H 0.13 1.97 6.48 -51.93 -0.34 1.63 16 18 C -0.13 -1.96 6.33 -26.75 -0.17 -2.13 16 19 C 0.52 8.59 7.98 -10.86 -0.09 8.50 16 20 O -0.53 -9.90 15.64 5.54 0.09 -9.82 16 21 N -0.53 -8.03 3.16 -112.38 -0.36 -8.39 16 22 C 0.02 0.31 6.80 -83.89 -0.57 -0.26 16 23 C 0.04 0.56 11.53 -17.22 -0.20 0.37 16 24 N -0.28 -4.02 12.56 30.70 0.39 -3.63 16 25 N -0.38 -4.79 4.04 -67.82 -0.27 -5.07 16 26 C 0.11 0.83 11.48 59.85 0.69 1.52 16 27 C 0.03 0.47 10.69 -16.68 -0.18 0.29 16 28 C 0.12 1.61 6.16 -3.02 -0.02 1.60 16 29 H 0.10 2.20 6.07 -51.93 -0.32 1.89 16 30 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.26 6.33 8.31 -40.82 -0.34 6.00 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.45 7.06 -51.93 -0.37 1.09 16 35 H 0.06 1.09 7.44 -51.93 -0.39 0.71 16 36 H 0.11 1.74 7.90 -51.93 -0.41 1.33 16 37 H 0.12 1.46 8.14 -51.93 -0.42 1.03 16 38 H 0.19 2.01 8.06 -52.48 -0.42 1.59 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.19 2.64 6.51 -52.49 -0.34 2.30 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.10 1.34 7.32 -51.93 -0.38 0.96 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -31.00 362.74 -6.08 -37.08 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.12 Total: 4.83 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -0.48 Total: 10.69 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.10 Total: -50.56 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.17 Total: -21.77 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.00 -6.08 -37.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599329503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.668 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds