Wall clock time and date at job start Fri Apr 10 2020 18:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46706 * 2 1 4 4 C 1.50697 * 109.47104 * 240.00155 * 2 1 3 5 5 H 1.08000 * 120.00215 * 239.99875 * 4 2 1 6 6 C 1.37880 * 120.00253 * 60.00044 * 4 2 1 7 7 N 1.31509 * 119.99669 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00037 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47279 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47024 * 120.00170 * 8 6 4 11 11 H 1.48502 * 109.46581 * 239.99619 * 8 6 4 12 12 N 1.46501 * 109.47215 * 120.00265 * 2 1 3 13 13 C 1.46495 * 120.00184 * 59.99835 * 12 2 1 14 14 C 1.34776 * 119.99708 * 240.00357 * 12 2 1 15 15 O 1.21281 * 119.99962 * 185.18557 * 14 12 2 16 16 C 1.50698 * 120.00300 * 5.18962 * 14 12 2 17 17 H 1.09002 * 110.85198 * 319.52051 * 16 14 12 18 18 C 1.54627 * 110.97230 * 83.31205 * 16 14 12 19 19 C 1.51274 * 104.19630 * 93.35916 * 18 16 14 20 20 O 1.21303 * 124.94704 * 196.27602 * 19 18 16 21 21 N 1.34423 * 110.11699 * 16.25173 * 19 18 16 22 22 C 1.40763 * 124.35450 * 180.40951 * 21 19 18 23 23 C 1.40247 * 126.08547 * 180.02562 * 22 21 19 24 24 N 1.30828 * 108.33748 * 180.02562 * 23 22 21 25 25 N 1.40065 * 108.36864 * 359.74586 * 24 23 22 26 26 C 1.46504 * 126.05437 * 180.26778 * 25 24 23 27 27 C 1.35758 * 126.07447 * 0.02562 * 22 21 19 28 28 C 1.46767 * 111.29815 * 0.67609 * 21 19 18 29 29 H 1.08995 * 109.47314 * 60.00039 * 1 2 3 30 30 H 1.09000 * 109.46706 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47452 * 299.99726 * 1 2 3 32 32 H 0.97002 * 119.99682 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47571 * 267.38212 * 13 12 2 34 34 H 1.09001 * 109.47414 * 27.37748 * 13 12 2 35 35 H 1.09003 * 109.47472 * 147.37937 * 13 12 2 36 36 H 1.09006 * 110.48340 * 334.67940 * 18 16 14 37 37 H 1.08998 * 110.48722 * 212.04146 * 18 16 14 38 38 H 1.08007 * 125.83222 * 0.02562 * 23 22 21 39 39 H 1.09001 * 109.47377 * 270.17723 * 26 25 24 40 40 H 1.08998 * 109.46997 * 30.18122 * 26 25 24 41 41 H 1.08999 * 109.47069 * 150.17653 * 26 25 24 42 42 H 1.07993 * 126.22360 * 359.97438 * 27 22 21 43 43 H 1.09000 * 110.24777 * 101.71956 * 28 21 19 44 44 H 1.09000 * 110.24250 * 223.71929 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1195 -4.0080 9 1 3.1485 -2.2856 -3.6038 10 1 1.1679 -1.5865 -4.8165 11 1 3.1473 -0.1855 -4.8160 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.2748 -0.6312 3.0237 16 6 3.0611 1.4368 1.9070 17 1 3.2298 1.6775 0.8573 18 6 1.9059 2.2832 2.4901 19 6 2.3478 2.5902 3.9039 20 8 1.6197 2.9887 4.7885 21 7 3.6648 2.3565 4.0376 22 6 4.3860 2.5357 5.2331 23 6 5.7575 2.3041 5.4131 24 7 6.0621 2.5806 6.6550 25 7 4.8992 3.0039 7.3110 26 6 4.8015 3.4147 8.7139 27 6 3.8776 2.9635 6.4170 28 6 4.2555 1.8966 2.7752 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7082 1.1608 -3.4844 33 1 0.7632 -2.1444 2.0387 34 1 1.4840 -2.5852 0.4722 35 1 2.4829 -2.5938 1.9454 36 1 0.9785 1.7103 2.4961 37 1 1.7825 3.2043 1.9205 38 1 6.4448 1.9567 4.6558 39 1 4.5794 2.5452 9.3325 40 1 5.7474 3.8539 9.0305 41 1 4.0049 4.1507 8.8223 42 1 2.8487 3.2277 6.6114 43 1 4.7873 2.7137 2.2878 44 1 4.9315 1.0612 2.9574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599329503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:34 Heat of formation + Delta-G solvation = 5.871276 kcal Electronic energy + Delta-G solvation = -27619.571379 eV Core-core repulsion = 23766.628523 eV Total energy + Delta-G solvation = -3852.942855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.59732 -41.57278 -40.15840 -37.59239 -37.13890 -34.64236 -34.49904 -33.32975 -30.96268 -30.31635 -29.02698 -27.96699 -27.32624 -27.18524 -24.21269 -23.07808 -23.06497 -21.68196 -20.45555 -19.71243 -18.71196 -18.50287 -18.36038 -17.15065 -16.90774 -16.71387 -16.36856 -16.19043 -15.96074 -15.90616 -15.39771 -14.78360 -14.74083 -14.58994 -14.28681 -13.98627 -13.92223 -13.64294 -13.48256 -13.36978 -13.25181 -13.09319 -12.90841 -12.81309 -12.70650 -12.51184 -12.41798 -12.12635 -11.97763 -11.91220 -11.28766 -11.14703 -10.96599 -10.66718 -10.44704 -10.42359 -9.35485 -8.67360 -8.10015 -6.22970 0.70434 1.17738 1.38167 1.45485 1.51461 1.58535 1.68109 1.99699 2.11744 2.30034 2.50209 3.18946 3.19424 3.36551 3.60448 3.68420 3.82563 3.92747 4.22610 4.33480 4.41969 4.46477 4.53965 4.61061 4.63818 4.66435 4.67379 4.68384 4.71461 4.78533 4.90547 4.99752 5.04669 5.13046 5.13775 5.45042 5.61912 5.73253 5.78203 5.93199 6.02092 6.04384 6.26127 6.57350 6.69433 6.88395 7.02525 7.31018 7.49817 8.92903 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024637 B = 0.003101 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.249935 B = 9027.801905 C = 9168.719798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.257 3.743 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.033 3.967 7 N -0.904 5.904 8 Si 0.948 3.052 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.593 5.593 13 C 0.093 3.907 14 C 0.510 3.490 15 O -0.590 6.590 16 C -0.118 4.118 17 H 0.145 0.855 18 C -0.126 4.126 19 C 0.510 3.490 20 O -0.562 6.562 21 N -0.524 5.524 22 C -0.007 4.007 23 C 0.040 3.960 24 N -0.301 5.301 25 N -0.375 5.375 26 C 0.097 3.903 27 C 0.028 3.972 28 C 0.123 3.877 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.266 0.734 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.147 0.853 38 H 0.208 0.792 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.185 0.815 43 H 0.124 0.876 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.689 6.261 12.137 14.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.156 3.844 3 H 0.077 0.923 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.168 4.168 7 N -0.542 5.542 8 Si 0.775 3.225 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.206 1.206 12 N -0.322 5.322 13 C -0.050 4.050 14 C 0.298 3.702 15 O -0.473 6.473 16 C -0.140 4.140 17 H 0.162 0.838 18 C -0.166 4.166 19 C 0.300 3.700 20 O -0.442 6.442 21 N -0.249 5.249 22 C -0.110 4.110 23 C -0.147 4.147 24 N -0.124 5.124 25 N -0.161 5.161 26 C -0.042 4.042 27 C -0.120 4.120 28 C 0.001 3.999 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.165 0.835 38 H 0.225 0.775 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.127 0.873 42 H 0.202 0.798 43 H 0.142 0.858 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.391 6.346 13.964 16.617 hybrid contribution -0.737 -0.856 -1.682 2.026 sum 5.654 5.490 12.283 14.594 Atomic orbital electron populations 1.21988 0.97681 0.99742 1.00687 1.18985 0.91653 0.93319 0.80409 0.92294 1.21547 1.31877 1.13244 0.91222 0.93014 1.25392 0.94955 0.95505 1.00946 1.69924 1.36601 1.23299 1.24424 0.85667 0.78035 0.78728 0.80113 1.20023 1.21034 1.20584 1.48261 1.48727 1.12331 1.22923 1.21436 0.99594 0.82378 1.01562 1.20642 0.78135 0.89830 0.81570 1.90624 1.53169 1.69968 1.33518 1.22369 0.96490 0.91148 1.03966 0.83759 1.22227 0.98764 1.03227 0.92417 1.21243 0.81414 0.76323 0.91009 1.90597 1.57934 1.48488 1.47191 1.45171 1.08261 1.62495 1.08987 1.17845 0.92500 1.13325 0.87312 1.23979 0.93755 1.01785 0.95152 1.77197 1.07893 1.20518 1.06785 1.48694 1.04506 1.51649 1.11203 1.22215 1.05852 1.02047 0.74119 1.22496 0.95482 1.04733 0.89290 1.22295 0.94964 1.01447 0.81182 0.90540 0.95168 0.95203 0.92493 0.93162 0.90665 0.92339 0.88445 0.83495 0.77499 0.89675 0.87956 0.87310 0.79828 0.85789 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 8.97 71.98 0.65 -5.20 16 2 C 0.26 10.67 2.52 44.24 0.11 10.78 16 3 H 0.06 2.42 5.35 -2.39 -0.01 2.40 16 4 C -0.54 -25.33 7.97 25.60 0.20 -25.12 16 5 H 0.05 2.51 7.38 -2.91 -0.02 2.49 16 6 C 0.03 1.58 5.30 84.66 0.45 2.03 16 7 N -0.90 -44.12 11.32 21.45 0.24 -43.87 16 8 Si 0.95 38.93 29.54 68.60 2.03 40.95 16 9 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 12 N -0.59 -22.99 2.75 -826.80 -2.28 -25.26 16 13 C 0.09 3.40 9.42 127.77 1.20 4.61 16 14 C 0.51 18.90 6.82 87.66 0.60 19.50 16 15 O -0.59 -24.90 15.41 -3.03 -0.05 -24.95 16 16 C -0.12 -3.41 2.50 -10.42 -0.03 -3.43 16 17 H 0.14 3.90 6.48 -2.39 -0.02 3.88 16 18 C -0.13 -3.52 6.33 30.58 0.19 -3.33 16 19 C 0.51 16.43 7.98 87.89 0.70 17.13 16 20 O -0.56 -20.86 15.64 -3.10 -0.05 -20.91 16 21 N -0.52 -15.36 3.16 -628.03 -1.99 -17.35 16 22 C -0.01 -0.21 6.80 37.62 0.26 0.04 16 23 C 0.04 1.05 11.53 85.33 0.98 2.03 16 24 N -0.30 -8.12 12.56 -56.77 -0.71 -8.83 16 25 N -0.37 -9.03 4.04 -368.47 -1.49 -10.52 16 26 C 0.10 1.30 11.48 127.77 1.47 2.77 16 27 C 0.03 0.77 10.69 83.50 0.89 1.66 16 28 C 0.12 3.05 6.16 86.89 0.54 3.58 16 29 H 0.08 3.47 6.07 -2.39 -0.01 3.46 16 30 H 0.03 1.21 7.67 -2.39 -0.02 1.19 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.27 12.48 8.31 -92.71 -0.77 11.71 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.76 7.06 -2.39 -0.02 2.74 16 35 H 0.06 2.12 7.44 -2.39 -0.02 2.11 16 36 H 0.10 2.99 7.90 -2.38 -0.02 2.97 16 37 H 0.15 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.21 4.12 8.06 -2.91 -0.02 4.09 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.18 5.20 6.51 -2.91 -0.02 5.18 16 43 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.09 2.37 7.32 -2.39 -0.02 2.36 16 Total: -1.00 -65.19 362.74 4.94 -60.25 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 1.02 Total: 23.42 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 8.21 Total: 27.06 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -6.22 Total: -105.84 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -0.10 Total: -45.85 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.95 kcal Total: -65.19 4.94 -60.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599329503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.121 kcal (2) G-P(sol) polarization free energy of solvation -65.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds