Wall clock time and date at job start Fri Apr 10 2020 18:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47034 * 2 1 4 4 C 1.50699 * 109.47288 * 120.00000 * 2 1 3 5 5 H 1.07999 * 119.99579 * 119.99994 * 4 2 1 6 6 C 1.37873 * 120.00013 * 299.99879 * 4 2 1 7 7 N 1.31513 * 120.00186 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99932 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47089 * 60.00320 * 8 6 4 10 10 H 1.48498 * 109.47269 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46971 * 300.00214 * 8 6 4 12 12 N 1.46499 * 109.46802 * 240.00307 * 2 1 3 13 13 C 1.46499 * 119.99845 * 299.99714 * 12 2 1 14 14 C 1.34773 * 119.99926 * 119.99828 * 12 2 1 15 15 O 1.21275 * 120.00333 * 4.61411 * 14 12 2 16 16 C 1.50708 * 119.99828 * 184.60691 * 14 12 2 17 17 H 1.08991 * 110.85879 * 328.61757 * 16 14 12 18 18 C 1.54630 * 110.99680 * 92.42379 * 16 14 12 19 19 C 1.51280 * 104.19320 * 142.93174 * 18 16 14 20 20 O 1.21307 * 124.94508 * 163.72549 * 19 18 16 21 21 N 1.34619 * 110.14892 * 343.76835 * 19 18 16 22 22 C 1.40765 * 124.46969 * 179.54119 * 21 19 18 23 23 C 1.40253 * 126.08539 * 180.02562 * 22 21 19 24 24 N 1.30829 * 108.34071 * 179.97438 * 23 22 21 25 25 N 1.40077 * 108.36568 * 359.97438 * 24 23 22 26 26 C 1.46501 * 126.05088 * 179.97438 * 25 24 23 27 27 C 1.35764 * 126.07989 * 359.73210 * 22 21 19 28 28 C 1.46763 * 111.18378 * 359.55881 * 21 19 18 29 29 H 1.09001 * 109.46873 * 299.99711 * 1 2 3 30 30 H 1.08998 * 109.47524 * 59.99652 * 1 2 3 31 31 H 1.08999 * 109.47034 * 179.97438 * 1 2 3 32 32 H 0.96999 * 119.99980 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47301 * 274.32835 * 13 12 2 34 34 H 1.08997 * 109.47327 * 34.32721 * 13 12 2 35 35 H 1.09007 * 109.47329 * 154.32578 * 13 12 2 36 36 H 1.08995 * 110.48796 * 261.60748 * 18 16 14 37 37 H 1.09005 * 110.48954 * 24.25484 * 18 16 14 38 38 H 1.08000 * 125.82808 * 359.96083 * 23 22 21 39 39 H 1.08999 * 109.46860 * 89.97525 * 26 25 24 40 40 H 1.08999 * 109.46858 * 209.98029 * 26 25 24 41 41 H 1.09000 * 109.46874 * 329.97694 * 26 25 24 42 42 H 1.07999 * 126.21495 * 0.04235 * 27 22 21 43 43 H 1.09002 * 110.24544 * 258.01466 * 28 21 19 44 44 H 1.09000 * 110.24673 * 136.10166 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3216 -1.1204 4.0079 9 1 3.8066 -1.1209 4.0081 10 1 1.8272 -0.4199 5.2204 11 1 1.8260 -2.5202 4.0076 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 6 2.7931 -0.0355 -2.0834 15 8 3.1553 1.0983 -1.8511 16 6 3.2095 -0.7122 -3.3640 17 1 3.3122 -1.7875 -3.2191 18 6 2.2134 -0.4003 -4.5048 19 6 3.0861 -0.2675 -5.7333 20 8 2.6850 -0.3018 -6.8776 21 7 4.3731 -0.1066 -5.3727 22 6 5.4420 0.0370 -6.2773 23 6 6.7928 0.2057 -5.9398 24 7 7.4845 0.3026 -7.0461 25 7 6.6020 0.1989 -8.1289 26 6 6.9663 0.2571 -9.5467 27 6 5.3494 0.0313 -7.6318 28 6 4.5179 -0.1007 -3.9122 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7089 1.1612 3.4844 33 1 2.3726 -2.7375 -0.9072 34 1 0.6585 -2.2809 -1.0526 35 1 1.6987 -2.3047 -2.4968 36 1 1.5047 -1.2193 -4.6270 37 1 1.6877 0.5340 -4.3075 38 1 7.1935 0.2486 -4.9378 39 1 7.1872 -0.7477 -9.9066 40 1 6.1369 0.6737 -10.1181 41 1 7.8460 0.8888 -9.6701 42 1 4.4438 -0.0834 -8.2089 43 1 4.6383 0.9200 -3.5492 44 1 5.3721 -0.7093 -3.6154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599329504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:36 Heat of formation + Delta-G solvation = 4.840333 kcal Electronic energy + Delta-G solvation = -26997.321073 eV Core-core repulsion = 23144.333513 eV Total energy + Delta-G solvation = -3852.987560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.59250 -41.53315 -40.25637 -37.63541 -36.97177 -34.97634 -34.44928 -33.34075 -31.35918 -30.08140 -28.85426 -27.56930 -27.42416 -27.22455 -25.02254 -23.10129 -22.53946 -21.50595 -20.47582 -19.78220 -18.73680 -18.55575 -18.31414 -17.28758 -17.10578 -16.66581 -16.38802 -16.09641 -15.96100 -15.77146 -15.40760 -14.79772 -14.69867 -14.57396 -14.44044 -14.26119 -13.95275 -13.71213 -13.56082 -13.42863 -13.34509 -12.94166 -12.88378 -12.66397 -12.60764 -12.48445 -12.34148 -12.12502 -12.09295 -11.98071 -11.27952 -11.12945 -11.12038 -10.60182 -10.46640 -10.42645 -9.28705 -8.71593 -8.10285 -6.26112 0.69356 1.14496 1.32735 1.45170 1.46963 1.53922 1.69484 1.96985 2.01840 2.30274 2.50039 3.12132 3.18181 3.35370 3.64080 3.70294 3.82943 3.91302 4.10077 4.22324 4.38995 4.43811 4.48424 4.53509 4.60651 4.64905 4.68590 4.73689 4.78239 4.87142 4.90329 4.95669 5.09905 5.10968 5.15625 5.52125 5.66620 5.69939 5.71887 5.87962 6.01638 6.07879 6.21427 6.55901 6.82017 6.85949 6.97853 7.34411 7.50393 8.93467 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026228 B = 0.002693 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.320576 B =10396.521684 C =10968.394701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.261 3.739 3 H 0.011 0.989 4 C -0.535 4.535 5 H 0.063 0.937 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.961 3.039 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.594 5.594 13 C 0.076 3.924 14 C 0.511 3.489 15 O -0.594 6.594 16 C -0.109 4.109 17 H 0.148 0.852 18 C -0.126 4.126 19 C 0.517 3.483 20 O -0.554 6.554 21 N -0.529 5.529 22 C -0.012 4.012 23 C 0.038 3.962 24 N -0.303 5.303 25 N -0.374 5.374 26 C 0.096 3.904 27 C 0.035 3.965 28 C 0.117 3.883 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.049 0.951 32 H 0.263 0.737 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.142 0.858 37 H 0.102 0.898 38 H 0.207 0.793 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.190 0.810 43 H 0.080 0.920 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.192 -7.426 -19.979 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.159 3.841 3 H 0.029 0.971 4 C -0.573 4.573 5 H 0.081 0.919 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.786 3.214 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.323 5.323 13 C -0.066 4.066 14 C 0.299 3.701 15 O -0.476 6.476 16 C -0.130 4.130 17 H 0.166 0.834 18 C -0.166 4.166 19 C 0.306 3.694 20 O -0.432 6.432 21 N -0.254 5.254 22 C -0.115 4.115 23 C -0.149 4.149 24 N -0.125 5.125 25 N -0.160 5.160 26 C -0.043 4.043 27 C -0.113 4.113 28 C -0.005 4.005 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.160 0.840 37 H 0.121 0.879 38 H 0.223 0.777 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.117 0.883 42 H 0.207 0.793 43 H 0.098 0.902 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.287 -6.605 -20.986 23.510 hybrid contribution -0.681 0.049 1.651 1.787 sum 7.606 -6.556 -19.335 21.787 Atomic orbital electron populations 1.21893 0.97154 1.00235 1.00031 1.18535 0.91548 0.92279 0.81712 0.97081 1.21555 1.31683 1.12998 0.91074 0.91906 1.25702 0.95187 0.95646 1.01977 1.70011 1.37409 1.23955 1.24348 0.85568 0.78438 0.78997 0.78358 1.20251 1.21346 1.18761 1.48176 1.48668 1.13412 1.22091 1.21939 1.01874 0.80204 1.02626 1.20562 0.78361 0.85949 0.85232 1.90658 1.57155 1.21210 1.78544 1.22222 0.95687 1.03682 0.91417 0.83413 1.22222 0.97721 1.06794 0.89889 1.21181 0.82651 0.75089 0.90440 1.90632 1.77329 1.52423 1.22839 1.45263 1.05157 1.68349 1.06663 1.17816 0.88383 1.16196 0.89090 1.24004 0.89829 1.01785 0.99258 1.77249 1.17662 1.24210 0.93411 1.48733 1.03752 1.55917 1.07555 1.22231 1.04285 1.04896 0.72906 1.22538 0.90501 1.04466 0.93760 1.22137 0.98356 1.03485 0.76534 0.91653 0.95814 0.93230 0.92787 0.92320 0.91152 0.87980 0.83966 0.87932 0.77682 0.89143 0.87345 0.88338 0.79330 0.90227 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.94 71.98 0.64 -5.46 16 2 C 0.26 12.74 2.63 44.25 0.12 12.86 16 3 H 0.01 0.66 6.91 -2.39 -0.02 0.64 16 4 C -0.53 -27.63 8.37 25.60 0.21 -27.41 16 5 H 0.06 3.12 7.52 -2.91 -0.02 3.10 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -51.68 11.32 21.45 0.24 -51.44 16 8 Si 0.96 41.81 29.54 68.60 2.03 43.83 16 9 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 12 N -0.59 -22.15 2.75 -826.79 -2.28 -24.42 16 13 C 0.08 1.98 9.38 127.77 1.20 3.18 16 14 C 0.51 18.06 6.77 87.66 0.59 18.66 16 15 O -0.59 -27.00 15.02 -3.01 -0.05 -27.04 16 16 C -0.11 -2.48 2.56 -10.48 -0.03 -2.51 16 17 H 0.15 2.36 6.51 -2.39 -0.02 2.35 16 18 C -0.13 -2.73 6.34 30.59 0.19 -2.53 16 19 C 0.52 13.29 7.98 87.87 0.70 13.99 16 20 O -0.55 -16.73 15.66 -3.11 -0.05 -16.78 16 21 N -0.53 -12.86 3.17 -628.08 -1.99 -14.85 16 22 C -0.01 -0.31 6.80 37.62 0.26 -0.05 16 23 C 0.04 0.86 11.53 85.33 0.98 1.84 16 24 N -0.30 -7.22 12.56 -56.77 -0.71 -7.93 16 25 N -0.37 -7.62 4.04 -368.48 -1.49 -9.10 16 26 C 0.10 0.99 11.48 127.77 1.47 2.45 16 27 C 0.04 0.81 10.70 83.50 0.89 1.71 16 28 C 0.12 2.68 6.43 86.83 0.56 3.24 16 29 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 30 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 2.02 6.69 -2.39 -0.02 2.00 16 32 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 33 H 0.06 1.50 8.01 -2.39 -0.02 1.48 16 34 H 0.07 1.91 6.44 -2.39 -0.02 1.89 16 35 H 0.10 1.71 6.04 -2.38 -0.01 1.70 16 36 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.10 2.54 7.89 -2.38 -0.02 2.52 16 38 H 0.21 3.53 8.06 -2.91 -0.02 3.51 16 39 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.19 4.26 6.52 -2.91 -0.02 4.25 16 43 H 0.08 2.23 6.89 -2.39 -0.02 2.22 16 44 H 0.11 2.01 8.13 -2.39 -0.02 1.99 16 Total: -1.00 -74.99 361.28 4.97 -70.02 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.02 Total: 16.55 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 8.24 Total: 21.17 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -6.22 Total: -107.75 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.09 Total: -43.82 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -74.99 4.97 -70.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599329504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.859 kcal (2) G-P(sol) polarization free energy of solvation -74.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds