Wall clock time and date at job start Fri Apr 10 2020 18:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99958 * 2 1 4 4 C 1.53001 * 109.47313 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.46760 * 305.00345 * 4 3 2 6 6 C 1.52995 * 109.47006 * 64.99913 * 4 3 2 7 7 C 1.52998 * 109.47227 * 185.00138 * 4 3 2 8 8 S 1.81400 * 109.47009 * 174.99772 * 7 4 3 9 9 O 1.42102 * 110.53912 * 68.37600 * 8 7 4 10 10 O 1.42096 * 110.54365 * 291.62638 * 8 7 4 11 11 N 1.65597 * 104.44853 * 179.97438 * 8 7 4 12 12 C 1.47086 * 120.87859 * 90.00521 * 11 8 7 13 13 C 1.53246 * 108.51814 * 231.16177 * 12 11 8 14 14 N 1.46902 * 109.33711 * 306.16785 * 13 12 11 15 15 C 1.46902 * 110.99497 * 187.25382 * 14 13 12 16 16 C 1.50699 * 109.47117 * 65.70000 * 15 14 13 17 17 H 1.08000 * 119.99735 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00035 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99471 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99932 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47348 * 60.00282 * 20 18 16 22 22 H 1.48503 * 109.47101 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47045 * 299.99950 * 20 18 16 24 24 C 1.46905 * 111.26950 * 63.11028 * 14 13 12 25 25 C 1.47077 * 120.88533 * 269.97607 * 11 8 7 26 26 H 1.09001 * 109.47293 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47266 * 300.00203 * 1 2 3 28 28 H 1.09001 * 109.47310 * 59.99638 * 1 2 3 29 29 H 1.09002 * 109.46869 * 59.99950 * 3 2 1 30 30 H 1.08996 * 109.47050 * 300.00311 * 3 2 1 31 31 H 1.09005 * 109.47405 * 300.00042 * 6 4 3 32 32 H 1.08997 * 109.47138 * 60.00102 * 6 4 3 33 33 H 1.08995 * 109.47209 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.46821 * 55.00310 * 7 4 3 35 35 H 1.09000 * 109.47123 * 294.99841 * 7 4 3 36 36 H 1.08995 * 109.62590 * 350.86935 * 12 11 8 37 37 H 1.09001 * 109.62973 * 111.45255 * 12 11 8 38 38 H 1.08998 * 109.49282 * 66.12711 * 13 12 11 39 39 H 1.09001 * 109.48895 * 186.20865 * 13 12 11 40 40 H 1.09008 * 109.46656 * 185.70064 * 15 14 13 41 41 H 1.09002 * 109.47174 * 305.69787 * 15 14 13 42 42 H 0.97003 * 119.99505 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.49314 * 176.93241 * 24 14 13 44 44 H 1.09000 * 109.49217 * 56.84795 * 24 14 13 45 45 H 1.08997 * 109.63136 * 248.55025 * 25 11 8 46 46 H 1.09010 * 109.62363 * 9.13403 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 1 3.8514 0.5682 0.8410 6 6 3.9952 0.5370 -1.3083 7 6 4.1573 2.5770 0.1251 8 16 5.9588 2.4234 0.2731 9 8 6.5211 1.9568 -0.9457 10 8 6.3082 1.8296 1.5159 11 7 6.4975 3.9842 0.3996 12 6 6.6345 4.6313 1.7134 13 6 5.9087 5.9803 1.6695 14 7 6.4108 6.7662 0.5346 15 6 5.8666 8.1305 0.5573 16 6 6.3900 8.8600 1.7676 17 1 7.0603 8.3603 2.4513 18 6 6.0141 10.1658 2.0015 19 7 5.1983 10.7743 1.1686 20 14 6.6635 11.0702 3.5014 21 1 8.1460 11.1293 3.4404 22 1 6.1132 12.4494 3.5244 23 1 6.2469 10.3510 4.7319 24 6 6.1178 6.1038 -0.7435 25 6 6.8522 4.7599 -0.7985 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.5521 -0.4549 -1.3979 32 1 3.6792 1.1535 -2.1498 33 1 5.0817 0.4506 -1.3086 34 1 3.7610 3.0732 1.0110 35 1 3.9143 3.1648 -0.7600 36 1 6.1875 3.9997 2.4810 37 1 7.6899 4.7904 1.9349 38 1 4.8380 5.8135 1.5512 39 1 6.0925 6.5224 2.5971 40 1 6.1725 8.6587 -0.3459 41 1 4.7783 8.0869 0.6018 42 1 4.9335 11.6929 1.3334 43 1 6.4532 6.7356 -1.5659 44 1 5.0442 5.9353 -0.8281 45 1 7.9285 4.9313 -0.8184 46 1 6.5490 4.2133 -1.6916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601536560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:42 Heat of formation + Delta-G solvation = -112.082899 kcal Electronic energy + Delta-G solvation = -26195.529444 eV Core-core repulsion = 22440.622912 eV Total energy + Delta-G solvation = -3754.906532 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.62735 -38.42245 -37.21959 -36.06591 -35.49625 -34.43674 -32.36105 -30.82561 -28.24050 -27.90992 -27.55810 -25.67357 -25.12003 -23.36408 -21.86483 -21.08473 -20.03812 -18.71194 -17.79254 -17.14228 -16.51357 -16.40092 -16.08091 -15.99957 -15.36829 -14.86827 -14.82083 -14.48627 -14.26982 -14.18055 -13.88611 -13.51230 -13.48083 -13.17756 -12.73257 -12.52642 -12.31658 -12.23457 -12.04614 -11.96684 -11.82851 -11.63420 -11.44489 -11.30007 -11.29591 -11.09260 -10.87268 -10.82184 -10.74811 -10.61280 -10.34673 -10.03398 -9.89788 -9.36018 -8.85150 -8.50004 -7.35883 -6.09918 -4.11845 0.16202 2.58342 3.29194 3.30666 3.33768 3.36530 3.80582 3.99720 4.26103 4.35931 4.39638 4.56780 4.69735 4.85335 4.86349 4.94346 4.99633 5.04874 5.21431 5.25588 5.29923 5.31038 5.35776 5.38835 5.47587 5.58921 5.61533 5.67834 5.76405 5.77003 5.99666 6.03068 6.14748 6.27332 6.41759 6.45020 6.70399 6.76339 7.18415 7.22738 7.71093 7.98329 8.08802 8.44450 8.95477 9.52994 11.00825 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.003091 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.084954 B = 9056.946400 C = 9839.545585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.073 3.927 4 C -0.076 4.076 5 H 0.092 0.908 6 C -0.176 4.176 7 C -0.634 4.634 8 S 2.613 3.387 9 O -0.952 6.952 10 O -0.955 6.955 11 N -0.997 5.997 12 C 0.124 3.876 13 C 0.050 3.950 14 N -0.533 5.533 15 C 0.194 3.806 16 C -0.511 4.511 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.039 3.961 25 C 0.128 3.872 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.023 0.977 39 H 0.097 0.903 40 H 0.032 0.968 41 H -0.010 1.010 42 H 0.262 0.738 43 H 0.081 0.919 44 H 0.024 0.976 45 H 0.080 0.920 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 -18.641 -3.936 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.005 4.005 4 C -0.096 4.096 5 H 0.110 0.890 6 C -0.233 4.233 7 C -0.761 4.761 8 S 2.706 3.294 9 O -0.942 6.942 10 O -0.945 6.945 11 N -0.836 5.836 12 C -0.002 4.002 13 C -0.080 4.080 14 N -0.259 5.259 15 C 0.069 3.931 16 C -0.549 4.549 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.091 4.091 25 C 0.002 3.998 26 H 0.105 0.895 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.041 0.959 39 H 0.116 0.884 40 H 0.050 0.950 41 H 0.008 0.992 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.043 0.957 45 H 0.098 0.902 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.540 -19.355 -3.919 20.510 hybrid contribution -1.611 1.456 0.650 2.266 sum -7.151 -17.900 -3.268 19.550 Atomic orbital electron populations 1.22755 0.80802 1.02849 1.00137 1.87854 1.19819 1.27776 1.95461 1.22522 0.92329 0.84767 1.00869 1.20761 0.95171 0.92747 1.00946 0.88955 1.22243 1.02938 1.02241 0.95881 1.30815 1.28222 1.05043 1.12064 1.04972 0.77013 0.73123 0.74321 1.93569 1.75074 1.78732 1.46866 1.93588 1.81514 1.75103 1.44298 1.57727 1.79827 1.32536 1.13517 1.21696 1.02599 0.93893 0.81972 1.22369 0.95347 0.92850 0.97481 1.61991 1.59998 1.04075 0.99787 1.19727 0.92875 0.82227 0.98243 1.21116 1.28210 0.97096 1.08514 0.91787 1.24990 0.95163 0.97505 0.96887 1.69945 1.34410 1.12637 1.36805 0.86548 0.79310 0.78609 0.82868 1.20102 1.21391 1.20244 1.22433 0.97041 0.94750 0.94864 1.21588 1.01228 0.91644 0.85302 0.89503 0.93949 0.93993 0.92739 0.92665 0.90538 0.91602 0.90657 0.84766 0.84729 0.89775 0.90142 0.95925 0.88444 0.95041 0.99189 0.92814 0.90037 0.95740 0.90170 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.88 10.24 -35.23 -0.36 -4.24 16 3 C 0.07 0.66 5.32 37.16 0.20 0.86 16 4 C -0.08 -0.75 2.62 -90.62 -0.24 -0.99 16 5 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 6 C -0.18 -1.75 8.78 37.16 0.33 -1.42 16 7 C -0.63 -6.10 5.62 37.16 0.21 -5.89 16 8 S 2.61 33.30 5.07 -107.50 -0.54 32.75 16 9 O -0.95 -13.75 14.53 -57.54 -0.84 -14.59 16 10 O -0.95 -14.68 16.79 -57.54 -0.97 -15.65 16 11 N -1.00 -13.64 3.26 -113.22 -0.37 -14.01 16 12 C 0.12 1.80 6.47 -3.59 -0.02 1.77 16 13 C 0.05 0.86 5.46 -3.70 -0.02 0.84 16 14 N -0.53 -10.57 4.62 -235.74 -1.09 -11.66 16 15 C 0.19 4.76 4.72 -4.98 -0.02 4.74 16 16 C -0.51 -13.65 8.41 -34.44 -0.29 -13.94 16 17 H 0.06 1.68 7.13 -52.49 -0.37 1.31 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 20 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 25 C 0.13 1.74 6.46 -3.60 -0.02 1.72 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.72 7.82 -51.93 -0.41 0.31 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.82 5.61 -51.93 -0.29 0.53 16 34 H 0.13 1.13 8.14 -51.92 -0.42 0.71 16 35 H 0.13 1.10 8.14 -51.92 -0.42 0.68 16 36 H 0.08 1.07 7.19 -51.93 -0.37 0.69 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 1.84 6.67 -51.93 -0.35 1.49 16 40 H 0.03 0.83 7.97 -51.92 -0.41 0.41 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.08 0.97 7.19 -51.92 -0.37 0.60 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -32.74 374.46 -9.75 -42.49 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -8.05 Total: -2.62 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 1.11 Total: -8.93 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.72 Total: -50.80 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -2.16 Total: -34.48 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 33.30 SS G_CDS: -0.54 Total: 32.75 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.74 -9.75 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601536560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.596 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds