Wall clock time and date at job start Fri Apr 10 2020 18:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99958 * 2 1 4 4 C 1.53001 * 109.47313 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.46760 * 305.00345 * 4 3 2 6 6 C 1.52995 * 109.47006 * 64.99913 * 4 3 2 7 7 C 1.52998 * 109.47227 * 185.00138 * 4 3 2 8 8 S 1.81400 * 109.47009 * 174.99772 * 7 4 3 9 9 O 1.42102 * 110.53912 * 68.37600 * 8 7 4 10 10 O 1.42096 * 110.54365 * 291.62638 * 8 7 4 11 11 N 1.65597 * 104.44853 * 179.97438 * 8 7 4 12 12 C 1.47086 * 120.87859 * 90.00521 * 11 8 7 13 13 C 1.53246 * 108.51814 * 231.16177 * 12 11 8 14 14 N 1.46902 * 109.33711 * 306.16785 * 13 12 11 15 15 C 1.46902 * 110.99497 * 187.25382 * 14 13 12 16 16 C 1.50699 * 109.47117 * 65.70000 * 15 14 13 17 17 H 1.08000 * 119.99735 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00035 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99471 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99932 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47348 * 60.00282 * 20 18 16 22 22 H 1.48503 * 109.47101 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47045 * 299.99950 * 20 18 16 24 24 C 1.46905 * 111.26950 * 63.11028 * 14 13 12 25 25 C 1.47077 * 120.88533 * 269.97607 * 11 8 7 26 26 H 1.09001 * 109.47293 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47266 * 300.00203 * 1 2 3 28 28 H 1.09001 * 109.47310 * 59.99638 * 1 2 3 29 29 H 1.09002 * 109.46869 * 59.99950 * 3 2 1 30 30 H 1.08996 * 109.47050 * 300.00311 * 3 2 1 31 31 H 1.09005 * 109.47405 * 300.00042 * 6 4 3 32 32 H 1.08997 * 109.47138 * 60.00102 * 6 4 3 33 33 H 1.08995 * 109.47209 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.46821 * 55.00310 * 7 4 3 35 35 H 1.09000 * 109.47123 * 294.99841 * 7 4 3 36 36 H 1.08995 * 109.62590 * 350.86935 * 12 11 8 37 37 H 1.09001 * 109.62973 * 111.45255 * 12 11 8 38 38 H 1.08998 * 109.49282 * 66.12711 * 13 12 11 39 39 H 1.09001 * 109.48895 * 186.20865 * 13 12 11 40 40 H 1.09008 * 109.46656 * 185.70064 * 15 14 13 41 41 H 1.09002 * 109.47174 * 305.69787 * 15 14 13 42 42 H 0.97003 * 119.99505 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.49314 * 176.93241 * 24 14 13 44 44 H 1.09000 * 109.49217 * 56.84795 * 24 14 13 45 45 H 1.08997 * 109.63136 * 248.55025 * 25 11 8 46 46 H 1.09010 * 109.62363 * 9.13403 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 1 3.8514 0.5682 0.8410 6 6 3.9952 0.5370 -1.3083 7 6 4.1573 2.5770 0.1251 8 16 5.9588 2.4234 0.2731 9 8 6.5211 1.9568 -0.9457 10 8 6.3082 1.8296 1.5159 11 7 6.4975 3.9842 0.3996 12 6 6.6345 4.6313 1.7134 13 6 5.9087 5.9803 1.6695 14 7 6.4108 6.7662 0.5346 15 6 5.8666 8.1305 0.5573 16 6 6.3900 8.8600 1.7676 17 1 7.0603 8.3603 2.4513 18 6 6.0141 10.1658 2.0015 19 7 5.1983 10.7743 1.1686 20 14 6.6635 11.0702 3.5014 21 1 8.1460 11.1293 3.4404 22 1 6.1132 12.4494 3.5244 23 1 6.2469 10.3510 4.7319 24 6 6.1178 6.1038 -0.7435 25 6 6.8522 4.7599 -0.7985 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.5521 -0.4549 -1.3979 32 1 3.6792 1.1535 -2.1498 33 1 5.0817 0.4506 -1.3086 34 1 3.7610 3.0732 1.0110 35 1 3.9143 3.1648 -0.7600 36 1 6.1875 3.9997 2.4810 37 1 7.6899 4.7904 1.9349 38 1 4.8380 5.8135 1.5512 39 1 6.0925 6.5224 2.5971 40 1 6.1725 8.6587 -0.3459 41 1 4.7783 8.0869 0.6018 42 1 4.9335 11.6929 1.3334 43 1 6.4532 6.7356 -1.5659 44 1 5.0442 5.9353 -0.8281 45 1 7.9285 4.9313 -0.8184 46 1 6.5490 4.2133 -1.6916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601536560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:41 Heat of formation + Delta-G solvation = -136.660842 kcal Electronic energy + Delta-G solvation = -26196.595223 eV Core-core repulsion = 22440.622912 eV Total energy + Delta-G solvation = -3755.972312 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.77219 -39.29311 -38.30077 -37.12458 -36.27746 -35.96496 -34.25814 -32.07749 -29.65133 -28.92226 -28.28541 -26.75792 -26.29653 -24.64931 -23.59097 -21.99273 -21.20199 -19.80296 -18.85112 -18.45917 -17.98743 -17.31594 -16.96777 -16.80594 -16.69217 -16.08979 -15.94247 -15.70481 -15.61608 -15.30588 -15.24424 -14.87581 -14.37479 -14.06292 -13.93817 -13.66565 -13.47382 -13.35422 -13.24523 -13.17723 -12.86606 -12.70734 -12.62224 -12.55568 -12.48885 -12.27176 -12.21401 -12.15548 -12.06490 -11.98555 -11.66247 -11.39610 -11.21516 -10.65221 -10.59006 -10.05030 -8.95243 -8.18641 -6.27916 -0.82915 1.43840 1.45970 1.53578 1.55476 2.42037 2.60066 2.91875 3.05756 3.14348 3.29684 3.48020 3.60310 3.65966 3.89544 4.10382 4.17021 4.28629 4.31959 4.37020 4.39954 4.42854 4.50605 4.51231 4.56161 4.61566 4.70509 4.78167 4.84564 4.85201 4.90008 5.03816 5.04631 5.08988 5.12751 5.25464 5.29018 5.30515 5.54820 5.67555 6.07973 6.17100 6.35853 6.66589 6.88651 7.42014 8.91925 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.003091 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.084954 B = 9056.946400 C = 9839.545585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.071 3.929 4 C -0.082 4.082 5 H 0.087 0.913 6 C -0.179 4.179 7 C -0.615 4.615 8 S 2.618 3.382 9 O -0.972 6.972 10 O -0.984 6.984 11 N -1.001 6.001 12 C 0.131 3.869 13 C 0.050 3.950 14 N -0.545 5.545 15 C 0.210 3.790 16 C -0.523 4.523 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.266 1.266 24 C 0.037 3.963 25 C 0.133 3.867 26 H 0.097 0.903 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.078 0.922 40 H 0.005 0.995 41 H -0.035 1.035 42 H 0.264 0.736 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.076 0.924 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 -19.514 -3.616 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.007 4.007 4 C -0.102 4.102 5 H 0.106 0.894 6 C -0.236 4.236 7 C -0.746 4.746 8 S 2.715 3.285 9 O -0.962 6.962 10 O -0.975 6.975 11 N -0.839 5.839 12 C 0.006 3.994 13 C -0.079 4.079 14 N -0.270 5.270 15 C 0.084 3.916 16 C -0.561 4.561 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.575 5.575 20 Si 0.790 3.210 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.191 1.191 24 C -0.092 4.092 25 C 0.007 3.993 26 H 0.116 0.884 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.171 0.829 35 H 0.174 0.826 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.023 0.977 41 H -0.017 1.017 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.053 0.947 45 H 0.094 0.906 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.207 -20.257 -3.596 21.490 hybrid contribution -1.461 1.644 0.493 2.254 sum -7.668 -18.613 -3.103 20.368 Atomic orbital electron populations 1.22934 0.79410 1.03902 1.00895 1.87820 1.21415 1.28308 1.95636 1.22557 0.91445 0.84795 1.01872 1.20823 0.96106 0.92546 1.00724 0.89435 1.22269 1.02086 1.02759 0.96468 1.30615 1.24176 1.05714 1.14113 1.04711 0.78254 0.72255 0.73284 1.93545 1.76589 1.78847 1.47217 1.93549 1.82927 1.75554 1.45467 1.57706 1.80573 1.32536 1.13046 1.21575 1.02085 0.92657 0.83130 1.22366 0.96183 0.93704 0.95696 1.61876 1.60093 1.02738 1.02295 1.19352 0.91169 0.84837 0.96286 1.21467 1.27946 0.97553 1.09151 0.91706 1.25854 0.95359 0.98464 0.99789 1.70069 1.35764 1.12982 1.38679 0.85498 0.78733 0.77261 0.79505 1.19574 1.21180 1.19111 1.22534 0.98126 0.95701 0.92885 1.21573 1.00763 0.90551 0.86380 0.88445 0.93289 0.93104 0.91878 0.91514 0.90385 0.90477 0.91922 0.82949 0.82570 0.87658 0.90668 0.95152 0.90351 0.97667 1.01710 0.92774 0.90156 0.94666 0.90555 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.39 10.24 -148.98 -1.53 -8.91 16 3 C 0.07 1.10 5.32 71.98 0.38 1.48 16 4 C -0.08 -1.43 2.62 -10.80 -0.03 -1.46 16 5 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 6 C -0.18 -3.22 8.78 71.98 0.63 -2.59 16 7 C -0.61 -10.04 5.62 71.98 0.40 -9.63 16 8 S 2.62 61.95 5.07 -56.49 -0.29 61.67 16 9 O -0.97 -26.53 14.53 -127.65 -1.86 -28.38 16 10 O -0.98 -29.03 16.79 -127.65 -2.14 -31.17 16 11 N -1.00 -25.59 3.26 -512.13 -1.67 -27.26 16 12 C 0.13 3.63 6.47 86.35 0.56 4.19 16 13 C 0.05 1.72 5.46 86.39 0.47 2.19 16 14 N -0.54 -21.58 4.62 -899.76 -4.16 -25.74 16 15 C 0.21 10.52 4.72 85.56 0.40 10.93 16 16 C -0.52 -28.28 8.41 25.60 0.22 -28.07 16 17 H 0.06 3.42 7.13 -2.91 -0.02 3.40 16 18 C 0.00 0.19 5.46 84.66 0.46 0.65 16 19 N -0.93 -54.58 13.29 21.45 0.28 -54.30 16 20 Si 0.97 42.97 29.54 68.60 2.03 45.00 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 C 0.04 1.16 5.62 86.38 0.49 1.64 16 25 C 0.13 3.38 6.46 86.35 0.56 3.94 16 26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.36 7.82 -2.38 -0.02 1.34 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.29 5.61 -2.39 -0.01 1.28 16 34 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.16 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.11 2.48 7.19 -2.39 -0.02 2.46 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 2.96 6.67 -2.39 -0.02 2.94 16 40 H 0.01 0.28 7.97 -2.38 -0.02 0.27 16 41 H -0.03 -1.88 8.12 -2.39 -0.02 -1.90 16 42 H 0.26 14.58 8.31 -92.71 -0.77 13.80 16 43 H 0.08 2.49 7.99 -2.39 -0.02 2.47 16 44 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.11 2.27 7.19 -2.38 -0.02 2.26 16 Total: -1.00 -70.51 374.46 -2.60 -73.11 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.94 Total: 11.17 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 5.79 Total: -15.18 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -5.54 Total: -107.30 kcal Atomic # 8 Polarization: -62.94 SS G_CDS: -5.52 Total: -68.46 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 61.95 SS G_CDS: -0.29 Total: 61.67 kcal Total: -70.51 -2.60 -73.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601536560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.553 kcal (2) G-P(sol) polarization free energy of solvation -70.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds