Wall clock time and date at job start Fri Apr 10 2020 18:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47031 * 2 1 4 4 C 1.50697 * 109.47448 * 119.99868 * 2 1 3 5 5 H 1.07996 * 120.00189 * 94.28416 * 4 2 1 6 6 C 1.37879 * 119.99767 * 274.28080 * 4 2 1 7 7 N 1.31517 * 119.99892 * 174.61325 * 6 4 2 8 8 Si 1.86802 * 120.00078 * 354.61143 * 6 4 2 9 9 H 1.48496 * 109.47042 * 275.14856 * 8 6 4 10 10 H 1.48493 * 109.47003 * 35.14999 * 8 6 4 11 11 H 1.48506 * 109.46907 * 155.15467 * 8 6 4 12 12 N 1.46500 * 109.47198 * 239.99993 * 2 1 3 13 13 C 1.46504 * 119.99952 * 299.99738 * 12 2 1 14 14 C 1.34776 * 120.00098 * 119.99828 * 12 2 1 15 15 O 1.21363 * 120.00038 * 5.52519 * 14 12 2 16 16 C 1.49353 * 119.99753 * 185.53056 * 14 12 2 17 17 O 1.21369 * 120.00520 * 5.74843 * 16 14 12 18 18 N 1.34780 * 119.99878 * 185.74622 * 16 14 12 19 19 C 1.39755 * 120.00181 * 184.60372 * 18 16 14 20 20 C 1.38997 * 120.45423 * 144.45522 * 19 18 16 21 21 N 1.31775 * 120.81509 * 179.72675 * 20 19 18 22 22 C 1.31819 * 121.87575 * 0.58419 * 21 20 19 23 23 C 1.38954 * 120.82495 * 359.68101 * 22 21 20 24 24 N 1.39707 * 120.45277 * 180.02562 * 23 22 21 25 25 C 1.46499 * 119.99698 * 179.97438 * 24 23 22 26 26 C 1.46497 * 120.00202 * 359.97438 * 24 23 22 27 27 C 1.39152 * 120.45112 * 324.73138 * 19 18 16 28 28 H 1.09005 * 109.47015 * 295.14518 * 1 2 3 29 29 H 1.09000 * 109.47549 * 55.15092 * 1 2 3 30 30 H 1.09004 * 109.46672 * 175.15116 * 1 2 3 31 31 H 0.97004 * 119.99908 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47063 * 95.56513 * 13 12 2 33 33 H 1.09000 * 109.47096 * 215.56644 * 13 12 2 34 34 H 1.09001 * 109.46684 * 335.56404 * 13 12 2 35 35 H 0.97000 * 119.99991 * 4.60009 * 18 16 14 36 36 H 1.08005 * 119.59244 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.58897 * 179.69956 * 22 21 20 38 38 H 1.08997 * 109.46961 * 90.00626 * 25 24 23 39 39 H 1.09001 * 109.47323 * 210.00374 * 25 24 23 40 40 H 1.09002 * 109.47383 * 330.00419 * 25 24 23 41 41 H 1.08997 * 109.47113 * 89.99546 * 26 24 23 42 42 H 1.09003 * 109.47095 * 209.99488 * 26 24 23 43 43 H 1.08997 * 109.47078 * 329.99872 * 26 24 23 44 44 H 1.08005 * 120.85420 * 359.95217 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.2783 -1.7610 1.1849 6 6 2.1782 -0.0189 2.4144 7 7 2.5145 -0.6593 3.5128 8 14 1.8981 1.8275 2.4583 9 1 3.1452 2.5270 2.0577 10 1 0.8060 2.1849 1.5177 11 1 1.5204 2.2382 3.8345 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1692 1.0931 -1.8435 16 6 3.1889 -0.6988 -3.3617 17 8 2.7294 -1.7846 -3.6498 18 7 4.0563 -0.0915 -4.1956 19 6 4.3528 -0.6656 -5.4348 20 6 4.5816 0.1370 -6.5463 21 7 4.8670 -0.3966 -7.7170 22 6 4.9367 -1.7017 -7.8887 23 6 4.7157 -2.5722 -6.8284 24 7 4.7921 -3.9541 -7.0191 25 6 4.5579 -4.8627 -5.8940 26 6 5.1064 -4.4945 -8.3440 27 6 4.4174 -2.0486 -5.5740 28 1 -0.3633 0.4367 0.9303 29 1 -0.3634 0.5872 -0.8433 30 1 -0.3633 -1.0240 -0.0869 31 1 2.6167 -0.1729 4.3458 32 1 0.7938 -2.1450 -2.0817 33 1 2.5031 -2.6066 -1.8984 34 1 1.4332 -2.5716 -0.4762 35 1 4.4748 0.7441 -3.9356 36 1 4.5295 1.2113 -6.4483 37 1 5.1687 -2.0994 -8.8656 38 1 3.4980 -5.1120 -5.8430 39 1 5.1390 -5.7739 -6.0358 40 1 4.8623 -4.3783 -4.9662 41 1 6.1861 -4.6045 -8.4447 42 1 4.6294 -5.4675 -8.4620 43 1 4.7375 -3.8135 -9.1110 44 1 4.2409 -2.6991 -4.7300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602033774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:52 Heat of formation + Delta-G solvation = 2.013043 kcal Electronic energy + Delta-G solvation = -27068.852941 eV Core-core repulsion = 23215.742780 eV Total energy + Delta-G solvation = -3853.110161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.15699 -40.00826 -38.30913 -37.07186 -36.04518 -34.91381 -32.69630 -31.47370 -30.45079 -30.12364 -28.55039 -26.45467 -25.51587 -25.36074 -24.88553 -23.15336 -21.62724 -20.70458 -19.33202 -18.07667 -17.50980 -17.12921 -16.91602 -16.51549 -16.18866 -15.68238 -15.51718 -15.32043 -15.09862 -14.56679 -14.31012 -13.89115 -13.59246 -13.37020 -13.30836 -12.93471 -12.67243 -12.66698 -12.45578 -12.42932 -12.38415 -12.08820 -11.79027 -11.60604 -11.20570 -11.04917 -10.87516 -10.75126 -10.58975 -10.50228 -9.87205 -9.80461 -9.40194 -8.96935 -8.68258 -8.65174 -7.92888 -7.61895 -6.24145 -4.27032 0.91926 1.31515 1.78847 2.50451 2.79458 3.24988 3.32031 3.37082 3.48234 3.78299 3.84323 4.30547 4.47652 4.57937 4.67251 4.76159 4.82387 4.89376 5.02051 5.12372 5.14755 5.19278 5.31748 5.33805 5.50766 5.77478 5.85031 5.91051 6.07208 6.08256 6.14833 6.32306 6.39153 6.45549 6.53288 6.78335 6.80864 6.87011 7.01716 7.10713 7.22473 7.47499 7.69028 7.92065 7.96851 8.29390 8.48428 8.77167 9.36229 10.87581 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.003016 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.401976 B = 9281.064141 C = 9967.455374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.224 3.776 3 H 0.064 0.936 4 C -0.531 4.531 5 H 0.081 0.919 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.871 3.129 9 H -0.270 1.270 10 H -0.261 1.261 11 H -0.286 1.286 12 N -0.547 5.547 13 C 0.082 3.918 14 C 0.495 3.505 15 O -0.535 6.535 16 C 0.511 3.489 17 O -0.497 6.497 18 N -0.647 5.647 19 C 0.148 3.852 20 C 0.019 3.981 21 N -0.427 5.427 22 C 0.004 3.996 23 C 0.183 3.817 24 N -0.630 5.630 25 C 0.091 3.909 26 C 0.093 3.907 27 C -0.161 4.161 28 H 0.062 0.938 29 H 0.027 0.973 30 H 0.052 0.948 31 H 0.268 0.732 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.426 0.574 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 -6.143 -21.104 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.124 3.876 3 H 0.082 0.918 4 C -0.569 4.569 5 H 0.099 0.901 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.698 3.302 9 H -0.196 1.196 10 H -0.185 1.185 11 H -0.212 1.212 12 N -0.277 5.277 13 C -0.061 4.061 14 C 0.276 3.724 15 O -0.414 6.414 16 C 0.294 3.706 17 O -0.371 6.371 18 N -0.294 5.294 19 C 0.050 3.950 20 C -0.143 4.143 21 N -0.134 5.134 22 C -0.158 4.158 23 C 0.078 3.922 24 N -0.342 5.342 25 C -0.052 4.052 26 C -0.050 4.050 27 C -0.193 4.193 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.264 0.736 36 H 0.174 0.826 37 H 0.170 0.830 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.833 -5.975 -21.607 22.743 hybrid contribution -0.089 0.614 1.074 1.240 sum 3.744 -5.361 -20.533 21.549 Atomic orbital electron populations 1.22300 0.97718 1.00754 1.00082 1.19464 0.91101 0.94830 0.82220 0.91809 1.21064 1.45658 0.98308 0.91826 0.90091 1.24895 0.93763 0.98368 0.95268 1.69881 1.46579 1.36334 0.99712 0.86971 0.79916 0.85940 0.77421 1.19564 1.18498 1.21172 1.48172 1.45796 1.12514 1.21254 1.21978 1.00928 0.81294 1.01922 1.19637 0.81797 0.86679 0.84324 1.90726 1.54765 1.18818 1.77112 1.20874 0.78634 0.85457 0.85635 1.90696 1.52834 1.19405 1.74158 1.43199 1.43541 1.27499 1.15209 1.18585 0.97935 0.92499 0.85986 1.22339 1.05230 1.00039 0.86694 1.67464 1.09358 1.12857 1.23699 1.22253 1.07189 0.88282 0.98124 1.18749 0.94687 0.84650 0.94136 1.46281 1.76200 1.01850 1.09831 1.21695 1.01078 0.93135 0.89269 1.21674 1.00316 0.99406 0.83626 1.21239 1.06206 0.94326 0.97530 0.91894 0.95385 0.92926 0.92236 0.93026 0.90612 0.90115 0.73572 0.82632 0.82999 0.92838 0.91345 0.91095 0.93101 0.91247 0.91165 0.83027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.91 37.16 0.33 -2.76 16 2 C 0.22 5.22 2.18 -69.08 -0.15 5.07 16 3 H 0.06 1.60 4.63 -51.93 -0.24 1.36 16 4 C -0.53 -14.16 8.66 -34.44 -0.30 -14.46 16 5 H 0.08 2.30 6.98 -52.49 -0.37 1.94 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -26.02 13.96 55.43 0.77 -25.24 16 8 Si 0.87 21.08 26.23 -169.99 -4.46 16.62 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.26 -5.99 6.21 56.52 0.35 -5.64 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.55 -11.30 2.75 -175.81 -0.48 -11.78 16 13 C 0.08 1.44 8.10 59.85 0.48 1.93 16 14 C 0.49 9.75 7.72 -11.63 -0.09 9.66 16 15 O -0.54 -11.63 15.84 5.49 0.09 -11.54 16 16 C 0.51 8.37 7.55 -11.63 -0.09 8.28 16 17 O -0.50 -8.31 10.88 5.48 0.06 -8.25 16 18 N -0.65 -8.84 5.32 -10.22 -0.05 -8.89 16 19 C 0.15 1.94 6.31 -83.63 -0.53 1.41 16 20 C 0.02 0.23 11.12 -17.29 -0.19 0.04 16 21 N -0.43 -5.38 10.34 -12.90 -0.13 -5.52 16 22 C 0.00 0.05 10.38 -17.29 -0.18 -0.13 16 23 C 0.18 2.10 6.56 -83.66 -0.55 1.56 16 24 N -0.63 -5.80 3.41 -187.45 -0.64 -6.44 16 25 C 0.09 0.74 10.21 59.85 0.61 1.35 16 26 C 0.09 0.55 10.20 59.85 0.61 1.16 16 27 C -0.16 -2.11 7.93 -38.90 -0.31 -2.42 16 28 H 0.06 1.32 6.85 -51.93 -0.36 0.96 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.00 7.51 -51.93 -0.39 0.61 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.08 1.27 5.98 -51.93 -0.31 0.96 16 34 H 0.08 1.48 6.71 -51.93 -0.35 1.13 16 35 H 0.43 5.16 8.33 -40.82 -0.34 4.82 16 36 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.15 1.30 6.15 -52.49 -0.32 0.98 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 40 H 0.07 0.65 6.24 -51.93 -0.32 0.32 16 41 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.31 8.07 -51.93 -0.42 -0.10 16 43 H 0.07 0.37 6.22 -51.93 -0.32 0.05 16 44 H 0.15 2.09 4.55 -52.48 -0.24 1.85 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -32.07 355.64 -5.63 -37.70 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.70 Total: 5.12 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: -0.44 Total: 12.86 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.54 Total: -57.87 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: 0.15 Total: -19.79 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.46 Total: 16.62 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.07 -5.63 -37.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602033774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.712 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds