Wall clock time and date at job start Fri Apr 10 2020 18:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47031 * 2 1 4 4 C 1.50697 * 109.47448 * 119.99868 * 2 1 3 5 5 H 1.07996 * 120.00189 * 94.28416 * 4 2 1 6 6 C 1.37879 * 119.99767 * 274.28080 * 4 2 1 7 7 N 1.31517 * 119.99892 * 174.61325 * 6 4 2 8 8 Si 1.86802 * 120.00078 * 354.61143 * 6 4 2 9 9 H 1.48496 * 109.47042 * 275.14856 * 8 6 4 10 10 H 1.48493 * 109.47003 * 35.14999 * 8 6 4 11 11 H 1.48506 * 109.46907 * 155.15467 * 8 6 4 12 12 N 1.46500 * 109.47198 * 239.99993 * 2 1 3 13 13 C 1.46504 * 119.99952 * 299.99738 * 12 2 1 14 14 C 1.34776 * 120.00098 * 119.99828 * 12 2 1 15 15 O 1.21363 * 120.00038 * 5.52519 * 14 12 2 16 16 C 1.49353 * 119.99753 * 185.53056 * 14 12 2 17 17 O 1.21369 * 120.00520 * 5.74843 * 16 14 12 18 18 N 1.34780 * 119.99878 * 185.74622 * 16 14 12 19 19 C 1.39755 * 120.00181 * 184.60372 * 18 16 14 20 20 C 1.38997 * 120.45423 * 144.45522 * 19 18 16 21 21 N 1.31775 * 120.81509 * 179.72675 * 20 19 18 22 22 C 1.31819 * 121.87575 * 0.58419 * 21 20 19 23 23 C 1.38954 * 120.82495 * 359.68101 * 22 21 20 24 24 N 1.39707 * 120.45277 * 180.02562 * 23 22 21 25 25 C 1.46499 * 119.99698 * 179.97438 * 24 23 22 26 26 C 1.46497 * 120.00202 * 359.97438 * 24 23 22 27 27 C 1.39152 * 120.45112 * 324.73138 * 19 18 16 28 28 H 1.09005 * 109.47015 * 295.14518 * 1 2 3 29 29 H 1.09000 * 109.47549 * 55.15092 * 1 2 3 30 30 H 1.09004 * 109.46672 * 175.15116 * 1 2 3 31 31 H 0.97004 * 119.99908 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47063 * 95.56513 * 13 12 2 33 33 H 1.09000 * 109.47096 * 215.56644 * 13 12 2 34 34 H 1.09001 * 109.46684 * 335.56404 * 13 12 2 35 35 H 0.97000 * 119.99991 * 4.60009 * 18 16 14 36 36 H 1.08005 * 119.59244 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.58897 * 179.69956 * 22 21 20 38 38 H 1.08997 * 109.46961 * 90.00626 * 25 24 23 39 39 H 1.09001 * 109.47323 * 210.00374 * 25 24 23 40 40 H 1.09002 * 109.47383 * 330.00419 * 25 24 23 41 41 H 1.08997 * 109.47113 * 89.99546 * 26 24 23 42 42 H 1.09003 * 109.47095 * 209.99488 * 26 24 23 43 43 H 1.08997 * 109.47078 * 329.99872 * 26 24 23 44 44 H 1.08005 * 120.85420 * 359.95217 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.2783 -1.7610 1.1849 6 6 2.1782 -0.0189 2.4144 7 7 2.5145 -0.6593 3.5128 8 14 1.8981 1.8275 2.4583 9 1 3.1452 2.5270 2.0577 10 1 0.8060 2.1849 1.5177 11 1 1.5204 2.2382 3.8345 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1692 1.0931 -1.8435 16 6 3.1889 -0.6988 -3.3617 17 8 2.7294 -1.7846 -3.6498 18 7 4.0563 -0.0915 -4.1956 19 6 4.3528 -0.6656 -5.4348 20 6 4.5816 0.1370 -6.5463 21 7 4.8670 -0.3966 -7.7170 22 6 4.9367 -1.7017 -7.8887 23 6 4.7157 -2.5722 -6.8284 24 7 4.7921 -3.9541 -7.0191 25 6 4.5579 -4.8627 -5.8940 26 6 5.1064 -4.4945 -8.3440 27 6 4.4174 -2.0486 -5.5740 28 1 -0.3633 0.4367 0.9303 29 1 -0.3634 0.5872 -0.8433 30 1 -0.3633 -1.0240 -0.0869 31 1 2.6167 -0.1729 4.3458 32 1 0.7938 -2.1450 -2.0817 33 1 2.5031 -2.6066 -1.8984 34 1 1.4332 -2.5716 -0.4762 35 1 4.4748 0.7441 -3.9356 36 1 4.5295 1.2113 -6.4483 37 1 5.1687 -2.0994 -8.8656 38 1 3.4980 -5.1120 -5.8430 39 1 5.1390 -5.7739 -6.0358 40 1 4.8623 -4.3783 -4.9662 41 1 6.1861 -4.6045 -8.4447 42 1 4.6294 -5.4675 -8.4620 43 1 4.7375 -3.8135 -9.1110 44 1 4.2409 -2.6991 -4.7300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602033774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:52 Heat of formation + Delta-G solvation = -20.845776 kcal Electronic energy + Delta-G solvation = -27069.844174 eV Core-core repulsion = 23215.742780 eV Total energy + Delta-G solvation = -3854.101394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.34341 -41.16826 -39.69803 -37.94292 -37.55293 -36.16454 -34.66670 -32.41601 -32.19922 -31.03204 -29.21211 -27.93910 -27.30644 -26.44983 -26.05037 -24.25559 -22.70464 -21.97014 -20.81720 -19.36573 -18.99789 -18.55875 -18.13840 -17.72585 -17.41610 -16.90931 -16.82210 -16.43969 -16.10365 -15.93722 -15.33382 -15.16317 -15.02184 -14.53140 -14.52201 -14.28410 -14.21526 -14.03412 -13.55660 -13.43438 -13.28363 -13.27048 -13.08479 -13.05856 -12.67780 -12.59952 -12.42076 -12.28000 -12.02152 -11.77228 -11.39562 -11.35387 -10.86370 -10.79386 -10.30880 -9.71639 -9.55168 -8.38221 -8.36968 -6.42853 -0.15354 0.39626 0.50310 1.20036 1.32769 1.37385 1.44331 2.03919 2.09097 2.28807 2.47021 2.85316 3.01081 3.21880 3.69552 3.87403 3.94851 3.97287 4.14548 4.34809 4.36804 4.41383 4.48767 4.49821 4.60310 4.70722 4.74955 4.77061 4.80647 4.86609 4.89936 5.00257 5.03159 5.06212 5.13190 5.22345 5.45549 5.52695 5.60346 5.81902 6.08569 6.16629 6.30292 6.40486 6.58314 6.62656 6.88365 7.03197 7.23978 8.78170 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.003016 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.401976 B = 9281.064141 C = 9967.455374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.225 3.775 3 H 0.048 0.952 4 C -0.528 4.528 5 H 0.052 0.948 6 C 0.030 3.970 7 N -0.934 5.934 8 Si 0.924 3.076 9 H -0.278 1.278 10 H -0.240 1.240 11 H -0.279 1.279 12 N -0.559 5.559 13 C 0.088 3.912 14 C 0.491 3.509 15 O -0.559 6.559 16 C 0.519 3.481 17 O -0.502 6.502 18 N -0.632 5.632 19 C 0.133 3.867 20 C 0.016 3.984 21 N -0.440 5.440 22 C 0.007 3.993 23 C 0.181 3.819 24 N -0.631 5.631 25 C 0.088 3.912 26 C 0.085 3.915 27 C -0.177 4.177 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.270 0.730 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.432 0.568 36 H 0.174 0.826 37 H 0.179 0.821 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 -6.179 -23.785 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.123 3.877 3 H 0.066 0.934 4 C -0.566 4.566 5 H 0.070 0.930 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.748 3.252 9 H -0.204 1.204 10 H -0.163 1.163 11 H -0.204 1.204 12 N -0.289 5.289 13 C -0.054 4.054 14 C 0.273 3.727 15 O -0.439 6.439 16 C 0.302 3.698 17 O -0.376 6.376 18 N -0.280 5.280 19 C 0.036 3.964 20 C -0.146 4.146 21 N -0.148 5.148 22 C -0.156 4.156 23 C 0.074 3.926 24 N -0.341 5.341 25 C -0.055 4.055 26 C -0.056 4.056 27 C -0.209 4.209 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.272 0.728 36 H 0.191 0.809 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.596 -6.038 -24.339 25.333 hybrid contribution 0.073 0.466 1.767 1.829 sum 3.670 -5.573 -22.571 23.537 Atomic orbital electron populations 1.22178 0.95344 1.01974 1.00757 1.19274 0.92822 0.93645 0.81911 0.93364 1.21276 1.44754 0.97257 0.93358 0.93002 1.25620 0.93917 1.02447 0.94996 1.69995 1.48753 1.38056 1.00437 0.86114 0.80038 0.80902 0.78118 1.20409 1.16272 1.20419 1.48130 1.46307 1.13553 1.20880 1.22025 1.02021 0.79714 1.01661 1.20143 0.80867 0.86464 0.85210 1.90702 1.55395 1.19921 1.77916 1.20129 0.79477 0.85368 0.84860 1.90696 1.53451 1.19419 1.74074 1.43000 1.42492 1.27393 1.15069 1.18677 0.99254 0.92781 0.85682 1.22574 1.04886 1.00849 0.86247 1.67528 1.09856 1.13639 1.23735 1.22695 1.05941 0.87867 0.99088 1.18847 0.94182 0.85984 0.93565 1.46569 1.75197 1.01078 1.11278 1.21766 1.01385 0.93707 0.88593 1.21919 1.01299 1.00329 0.82073 1.21261 1.07243 0.94333 0.98087 0.92359 0.93236 0.91784 0.92124 0.91046 0.89866 0.91331 0.72791 0.80896 0.80382 0.93035 0.88900 0.92519 0.91994 0.89520 0.90343 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 8.91 71.98 0.64 -5.06 16 2 C 0.23 10.40 2.18 44.24 0.10 10.50 16 3 H 0.05 2.39 4.63 -2.38 -0.01 2.38 16 4 C -0.53 -28.68 8.66 25.60 0.22 -28.46 16 5 H 0.05 3.06 6.98 -2.91 -0.02 3.04 16 6 C 0.03 1.69 5.47 84.65 0.46 2.15 16 7 N -0.93 -56.01 13.96 21.45 0.30 -55.71 16 8 Si 0.92 43.54 26.23 68.60 1.80 45.34 16 9 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 10 H -0.24 -10.36 6.21 99.48 0.62 -9.75 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 N -0.56 -22.85 2.75 -828.48 -2.28 -25.13 16 13 C 0.09 3.05 8.10 127.77 1.03 4.08 16 14 C 0.49 19.14 7.72 87.24 0.67 19.81 16 15 O -0.56 -24.14 15.84 -3.29 -0.05 -24.19 16 16 C 0.52 16.68 7.55 87.24 0.66 17.34 16 17 O -0.50 -16.35 10.88 -3.30 -0.04 -16.39 16 18 N -0.63 -16.77 5.32 -304.60 -1.62 -18.39 16 19 C 0.13 3.36 6.31 38.28 0.24 3.60 16 20 C 0.02 0.36 11.12 84.88 0.94 1.31 16 21 N -0.44 -10.25 10.34 -194.71 -2.01 -12.27 16 22 C 0.01 0.15 10.38 84.87 0.88 1.03 16 23 C 0.18 3.86 6.56 38.28 0.25 4.11 16 24 N -0.63 -10.23 3.41 -746.95 -2.55 -12.78 16 25 C 0.09 1.30 10.21 127.77 1.30 2.61 16 26 C 0.09 0.76 10.20 127.77 1.30 2.06 16 27 C -0.18 -4.49 7.93 22.71 0.18 -4.31 16 28 H 0.06 2.34 6.85 -2.38 -0.02 2.32 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 2.35 7.51 -2.39 -0.02 2.33 16 31 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.07 2.19 8.09 -2.39 -0.02 2.17 16 33 H 0.08 2.76 5.98 -2.39 -0.01 2.75 16 34 H 0.07 2.53 6.71 -2.39 -0.02 2.52 16 35 H 0.43 10.17 8.33 -92.71 -0.77 9.40 16 36 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 37 H 0.18 2.48 6.15 -2.91 -0.02 2.47 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.09 0.90 8.07 -2.39 -0.02 0.88 16 40 H 0.06 1.00 6.24 -2.39 -0.01 0.99 16 41 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.09 0.50 8.07 -2.39 -0.02 0.48 16 43 H 0.08 0.58 6.22 -2.39 -0.01 0.56 16 44 H 0.14 3.85 4.55 -2.91 -0.01 3.84 16 Total: -1.00 -69.24 355.64 2.64 -66.60 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.19 Total: 22.15 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: 8.90 Total: 30.77 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -8.16 Total: -124.28 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.09 Total: -40.58 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.80 Total: 45.34 kcal Total: -69.24 2.64 -66.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602033774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.754 kcal (2) G-P(sol) polarization free energy of solvation -69.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds